; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy02g009100 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy02g009100
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase
Genome locationChr02:16958017..16958840
RNA-Seq ExpressionLcy02g009100
SyntenyLcy02g009100
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051940.1 hypothetical protein E6C27_scaffold60G003970 [Cucumis melo var. makuwa]2.7e-1182.69Show/hide
Query:  PLSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVYV
        PLSTLSVLR NDAVVEIEL VPDTLPTSAESS S+SSYF +QV+SGLH V V
Subjt:  PLSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVYV

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-1070.69Show/hide
Query:  MSKLSYIPLSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVY
        + K    PLST SVL  NDAVVEIEL VPDTLPTSAES  S+SSYF +QVMSGLH V+
Subjt:  MSKLSYIPLSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVY

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]5.5e-1284Show/hide
Query:  LSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVY
        LSTLSVLR NDAVVEIELPVPDTLPTS ESS S+SSYF +QVMSGLH V+
Subjt:  LSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVY

TYK12219.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.7e-1182.69Show/hide
Query:  PLSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVYV
        PLSTLSVLR NDAVVEIEL VPDTLPTSAESS S+SSYF +QV+SGLH V V
Subjt:  PLSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVYV

TYK21916.1 hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa]7.2e-1284.31Show/hide
Query:  LSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVYV
        LSTLSVLR NDAVVEIELPVPD LPTSAESS S+SSYF +QVMSGL+ VYV
Subjt:  LSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVYV

TrEMBL top hitse value%identityAlignment
A0A5A7U9T8 Uncharacterized protein1.3e-1182.69Show/hide
Query:  PLSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVYV
        PLSTLSVLR NDAVVEIEL VPDTLPTSAESS S+SSYF +QV+SGLH V V
Subjt:  PLSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVYV

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein6.6e-1170.69Show/hide
Query:  MSKLSYIPLSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVY
        + K    PLST SVL  NDAVVEIEL VPDTLPTSAES  S+SSYF +QVMSGLH V+
Subjt:  MSKLSYIPLSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVY

A0A5D3BMJ4 Retrotrans_gag domain-containing protein2.7e-1284Show/hide
Query:  LSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVY
        LSTLSVLR NDAVVEIELPVPDTLPTS ESS S+SSYF +QVMSGLH V+
Subjt:  LSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVY

A0A5D3CPH9 Ty3-gypsy retrotransposon protein1.3e-1182.69Show/hide
Query:  PLSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVYV
        PLSTLSVLR NDAVVEIEL VPDTLPTSAESS S+SSYF +QV+SGLH V V
Subjt:  PLSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVYV

A0A5D3DE96 Uncharacterized protein3.5e-1284.31Show/hide
Query:  LSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVYV
        LSTLSVLR NDAVVEIELPVPD LPTSAESS S+SSYF +QVMSGL+ VYV
Subjt:  LSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVYV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAAGCTGAGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGGCAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCTACGTCTGCTGA
AAGTTCTAGATCAAGCTCCAGTTACTTTCCAAGCCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCATATAGAA
TGTTTTATATCTATGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCAAGCTGAGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGGCAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCTACGTCTGCTGA
AAGTTCTAGATCAAGCTCCAGTTACTTTCCAAGCCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCATATAGAA
TGTTTTATATCTATGATTAG
Protein sequenceShow/hide protein sequence
MSKLSYIPLSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVYVERFPWIPLCGVSYRMFYIYD