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Lcy02g010180 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy02g010180
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionDNA polymerase delta subunit 4
Genome locationChr02:27516010..27517271
RNA-Seq ExpressionLcy02g010180
SyntenyLcy02g010180
Gene Ontology termsGO:0000731 - DNA synthesis involved in DNA repair (biological process)
GO:0006261 - DNA-dependent DNA replication (biological process)
GO:0043625 - delta DNA polymerase complex (cellular component)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR007218 - DNA polymerase delta, subunit 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143634.1 uncharacterized protein LOC101209940 [Cucumis sativus]3.9e-5285.04Show/hide
Query:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL
        MAS RGG+KDFYKQ+K SGISK   KASKPSSRKTKSPANSA+LGS  VQPAAL+SHG LDLQDDYG SEN +RQFDMN AYGPCLGMTRM RWERAC+L
Subjt:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL

Query:  GLNPPKDIETLLKAGKVQLECLWDSRV
        GLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  GLNPPKDIETLLKAGKVQLECLWDSRV

XP_008467236.1 PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo]1.9e-5487.4Show/hide
Query:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL
        MAS RGG+KDFYKQ+K SGISK   KASKPSSRKTKSPANSA+LGS  VQPAAL+SHG LDLQDDYGESENM+RQFDMNMAYGPCLGMTRM RWERAC+L
Subjt:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL

Query:  GLNPPKDIETLLKAGKVQLECLWDSRV
        GLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  GLNPPKDIETLLKAGKVQLECLWDSRV

XP_022957680.1 uncharacterized protein LOC111459143 [Cucurbita moschata]2.4e-4981.89Show/hide
Query:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL
        MAS RGGMKDFYKQ+K SG+S    K SKPSSRKTKS ANSATL S GVQPAALISHG LDL+DDYGESEN++RQFDMNMAYGPCLGMTRMERWE A  L
Subjt:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL

Query:  GLNPPKDIETLLKAGKVQLECLWDSRV
        GLNPPK+IETLLK GKVQLECLW SR+
Subjt:  GLNPPKDIETLLKAGKVQLECLWDSRV

XP_023532644.1 uncharacterized protein LOC111794744 [Cucurbita pepo subsp. pepo]7.0e-4981.1Show/hide
Query:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL
        MAS RGGMKDFYKQ+K SG+S    K SKPSSRKTKS ANSATL S GVQPA LISHG LDL+DDYGESEN++RQFDMNMAYGPCLGMTRMERWE A  L
Subjt:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL

Query:  GLNPPKDIETLLKAGKVQLECLWDSRV
        GLNPPK+IETLLK GKVQLECLW SR+
Subjt:  GLNPPKDIETLLKAGKVQLECLWDSRV

XP_038875328.1 DNA polymerase delta subunit 4 [Benincasa hispida]5.0e-5587.4Show/hide
Query:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL
        MAS RGG+KDFYKQ+K SGISK N+KASKPSSRK KSPANSA+LGS  VQPAALISHG LDLQDDYG  ENM+RQFDMNMAYGPCLGMTRM RWERACNL
Subjt:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL

Query:  GLNPPKDIETLLKAGKVQLECLWDSRV
        GLNPPKDIETLLKA KVQLECLWDSRV
Subjt:  GLNPPKDIETLLKAGKVQLECLWDSRV

TrEMBL top hitse value%identityAlignment
A0A0A0KND6 Uncharacterized protein1.9e-5285.04Show/hide
Query:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL
        MAS RGG+KDFYKQ+K SGISK   KASKPSSRKTKSPANSA+LGS  VQPAAL+SHG LDLQDDYG SEN +RQFDMN AYGPCLGMTRM RWERAC+L
Subjt:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL

Query:  GLNPPKDIETLLKAGKVQLECLWDSRV
        GLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  GLNPPKDIETLLKAGKVQLECLWDSRV

A0A1S3CT23 DNA polymerase delta subunit 49.2e-5587.4Show/hide
Query:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL
        MAS RGG+KDFYKQ+K SGISK   KASKPSSRKTKSPANSA+LGS  VQPAAL+SHG LDLQDDYGESENM+RQFDMNMAYGPCLGMTRM RWERAC+L
Subjt:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL

Query:  GLNPPKDIETLLKAGKVQLECLWDSRV
        GLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  GLNPPKDIETLLKAGKVQLECLWDSRV

A0A5A7UNL0 DNA polymerase delta subunit 49.2e-5587.4Show/hide
Query:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL
        MAS RGG+KDFYKQ+K SGISK   KASKPSSRKTKSPANSA+LGS  VQPAAL+SHG LDLQDDYGESENM+RQFDMNMAYGPCLGMTRM RWERAC+L
Subjt:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL

Query:  GLNPPKDIETLLKAGKVQLECLWDSRV
        GLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  GLNPPKDIETLLKAGKVQLECLWDSRV

A0A6J1H180 uncharacterized protein LOC1114591431.2e-4981.89Show/hide
Query:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL
        MAS RGGMKDFYKQ+K SG+S    K SKPSSRKTKS ANSATL S GVQPAALISHG LDL+DDYGESEN++RQFDMNMAYGPCLGMTRMERWE A  L
Subjt:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL

Query:  GLNPPKDIETLLKAGKVQLECLWDSRV
        GLNPPK+IETLLK GKVQLECLW SR+
Subjt:  GLNPPKDIETLLKAGKVQLECLWDSRV

A0A6J1K4T3 uncharacterized protein LOC1114911822.9e-4880.31Show/hide
Query:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL
        MAS RGGMKDFYKQ+K SG+S    K SKPSS KTKS A+SATL S GVQPAALISHG LDL+DDYGESEN++RQFDMNMAYGPCLGMTRMERWE A  L
Subjt:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL

Query:  GLNPPKDIETLLKAGKVQLECLWDSRV
        GLNPPK+IETLLK GKVQLECLW SR+
Subjt:  GLNPPKDIETLLKAGKVQLECLWDSRV

SwissProt top hitse value%identityAlignment
O59835 DNA polymerase delta subunit 42.6e-0651.16Show/hide
Query:  ENMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLL
        E ++  FD    YGP LGMTRM+RW+RA N  LNPP+ +  +L
Subjt:  ENMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLL

Q3T0X9 DNA polymerase delta subunit 42.8e-0842.37Show/hide
Query:  ESENMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKA--GKVQLEC-LW
        E   ++RQFD+   YGPC G+TR++RW RA  +GL PP ++  +L++  G  + +C LW
Subjt:  ESENMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKA--GKVQLEC-LW

Q9CWP8 DNA polymerase delta subunit 41.4e-0751.16Show/hide
Query:  MVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKA
        ++RQFD+   YGPC G+TR++RW RA  +GL PP ++  +LKA
Subjt:  MVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKA

Q9HCU8 DNA polymerase delta subunit 41.1e-0740.62Show/hide
Query:  QDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKA--GKVQLEC-LW
        +D+      ++RQFD+   YGPC G+TR++RW RA  +GL PP ++  +LK   G  + +C LW
Subjt:  QDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKA--GKVQLEC-LW

Arabidopsis top hitse value%identityAlignment
AT1G09815.1 polymerase delta 49.4e-3659.23Show/hide
Query:  MASVRGGMKDFYKQKKKS---GISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERA
        MA+    +K FYKQ K +   GISK     SKPSSRK  +P ++A  GS   QPAALISHG +DL +DY + E M+RQFDMN+ YGPCLGMTR++RWERA
Subjt:  MASVRGGMKDFYKQKKKS---GISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERA

Query:  CNLGLNPPKDIETLLKAGKVQLECLWDSRV
          LG+NPP +IE LLK GKVQ +CLW  RV
Subjt:  CNLGLNPPKDIETLLKAGKVQLECLWDSRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGGTTCGAGGAGGTATGAAAGATTTCTACAAGCAAAAGAAAAAGAGTGGAATCTCCAAACCCAACAACAAGGCTTCAAAGCCCTCTTCTAGGAAAACCAAATC
TCCGGCAAACTCCGCAACTTTGGGCTCCGGTGGCGTCCAACCGGCGGCTCTTATTTCTCACGGCTTCCTGGATCTTCAAGATGATTATGGTGAGTCTGAGAATATGGTGA
GGCAATTTGACATGAACATGGCCTATGGACCTTGCCTTGGAATGACCAGAATGGAACGGTGGGAGCGTGCCTGTAATCTTGGTTTGAACCCTCCAAAAGACATTGAGACA
CTCTTAAAGGCCGGCAAAGTGCAGTTAGAGTGCTTGTGGGATTCCCGAGTTTAA
mRNA sequenceShow/hide mRNA sequence
GATCAGAGAGAGAGAGAGAGAGGGAGAAAAATGGCGTCGGTTCGAGGAGGTATGAAAGATTTCTACAAGCAAAAGAAAAAGAGTGGAATCTCCAAACCCAACAACAAGGC
TTCAAAGCCCTCTTCTAGGAAAACCAAATCTCCGGCAAACTCCGCAACTTTGGGCTCCGGTGGCGTCCAACCGGCGGCTCTTATTTCTCACGGCTTCCTGGATCTTCAAG
ATGATTATGGTGAGTCTGAGAATATGGTGAGGCAATTTGACATGAACATGGCCTATGGACCTTGCCTTGGAATGACCAGAATGGAACGGTGGGAGCGTGCCTGTAATCTT
GGTTTGAACCCTCCAAAAGACATTGAGACACTCTTAAAGGCCGGCAAAGTGCAGTTAGAGTGCTTGTGGGATTCCCGAGTTTAAAGACTAGTATGTTAGCTGTGTTATTT
TTTATTAATGTATGAAGTGTGTGTTGTGTTTTGGGACAAAATGTTCAGCCTCTGGCTGAAATGATAATCACTTCTCCTATTATGTGAATGGGCTAGAATGTTTACTGATA
TTAGCTCTCTTGTTATTTACTTTTCAGTTATGTGTTGCAAACGACGAGTAGTTGTATAGTTAAACTTGGTGAATTTTTTCCTTTCCCAATGTTGTTATAATTTGCTCAAA
TG
Protein sequenceShow/hide protein sequence
MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQDDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIET
LLKAGKVQLECLWDSRV