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Lcy02g010210 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy02g010210
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr02:27560500..27561524
RNA-Seq ExpressionLcy02g010210
SyntenyLcy02g010210
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABA97040.1 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]6.0e-1127.91Show/hide
Query:  KLKRVLSSEELYLVCGIPL--VDHGLVGYTRAMMFWNLM------LLLIFWEVECGHSFVDQCLSLQSQLFEREFILWCVGCWTLWNDRNAVWMGRQISG
        K KR L   E+  +CG     V H L     A+  W  M       L +      G  F DQ  +  ++    E ++ C+  W +W  RN ++ G+    
Subjt:  KLKRVLSSEELYLVCGIPL--VDHGLVGYTRAMMFWNLM------LLLIFWEVECGHSFVDQCLSLQSQLFEREFILWCVGCWTLWNDRNAVWMGRQISG

Query:  LAMKCNWVEEFIASFLQAHDRPDSMFSSG------------EVSY----VGPRWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAV
        +A+   ++E + +S L+    P +    G            E ++    V  RW +P  GW KLNVD SY  ++   GIG ++RDS G+V+ +    +  
Subjt:  LAMKCNWVEEFIASFLQAHDRPDSMFSSG------------EVSY----VGPRWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAV

Query:  SYSPFNVEALAVLEG
          SP   E LA  EG
Subjt:  SYSPFNVEALAVLEG

EAY83065.1 hypothetical protein OsI_38284 [Oryza sativa Indica Group]8.3e-1329.86Show/hide
Query:  KLKRVLSSEELYLVCGIPLVD--HGLVGYTRAMMFWNLM--LLLIFWEVECGHSFVDQCLSLQSQLFEREFILWCVGCWTLWNDRNAVWMGRQISGLAMK
        K KR L       +CG    D  H L    +A   W+ M     I  +V    S  D  L+L   L + E  ++ +  W +W++RN +  G+ I+ +A+ 
Subjt:  KLKRVLSSEELYLVCGIPLVD--HGLVGYTRAMMFWNLM--LLLIFWEVECGHSFVDQCLSLQSQLFEREFILWCVGCWTLWNDRNAVWMGRQISGLAMK

Query:  CNWVEEFIASFLQAHDRPDSMFSSG-EVSY-------------VGP--RWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAVSYSP
          ++  +++S       P +    G +V++             V P  RW +P  GW KLNVD S+       GIGA++RDSSG+V+ A   S+ V  S 
Subjt:  CNWVEEFIASFLQAHDRPDSMFSSG-EVSY-------------VGP--RWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAVSYSP

Query:  FNVEALAVLEG
           E LA  EG
Subjt:  FNVEALAVLEG

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]2.7e-1130Show/hide
Query:  HGLVGYTRAMMFWNLMLLLIFWEVECGH-SFVDQCLSLQSQLFEREFILWCVGCWTLWNDRNAVWMGRQISGLAMKCNWVEEFIASFLQAHDRPDSMFSS
        H +    RA   WNLM   +F     G+ SF+D  L L  +L  ++  L     W +W DRN+   G  +S  A++CNW+  +  ++ QA +        
Subjt:  HGLVGYTRAMMFWNLMLLLIFWEVECGH-SFVDQCLSLQSQLFEREFILWCVGCWTLWNDRNAVWMGRQISGLAMKCNWVEEFIASFLQAHDRPDSMFSS

Query:  GEVSYVGPRWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAVSYSPFNVEALAVLE
          V     RW+ P +   K+N D   +  +  TG+G IIRD  G +LVA +  + +  +P   E   +LE
Subjt:  GEVSYVGPRWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAVSYSPFNVEALAVLE

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]3.3e-1732.32Show/hide
Query:  LKRVLSSEELYLVCG--IPLVDHGLVGYTRAMMFWNLMLLLIFWEVECGHSFVDQCLSLQSQLFEREFILWCVGCWTLWNDRNAVWMGRQISGLAMKCNW
        +KR +      LVCG  I   DH L    RA   WN++L   F + +  +S  D  L L   L   +F L  VG W +WNDRNA+ M RQI    ++ +W
Subjt:  LKRVLSSEELYLVCG--IPLVDHGLVGYTRAMMFWNLMLLLIFWEVECGHSFVDQCLSLQSQLFEREFILWCVGCWTLWNDRNAVWMGRQISGLAMKCNW

Query:  VEEFIASFLQAHDRPD------SMFSSGEVSYVGPRWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAVSYSPFNVEALAVLEG
        +  ++  F Q  D P          +S     +   W  P  GW K+NVD +       TGIG + R+  G +L       A S+ P   E+LA+ +G
Subjt:  VEEFIASFLQAHDRPD------SMFSSGEVSYVGPRWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAVSYSPFNVEALAVLEG

XP_030508852.1 uncharacterized protein LOC115723496 [Cannabis sativa]2.7e-1127.72Show/hide
Query:  VDHGLVGYTRAMMFWNLMLLLIFWEVECGHSFVDQCLSLQSQLFEREFILWCVGCWTLWNDRNAVWMGRQISGLAMKCNWVEEFIASFLQAH--------
        V H L    RA   W L    I ++     S  D  L L + L   E  L+ V CW++W++RNA++ G  +   A    +   ++  F QA         
Subjt:  VDHGLVGYTRAMMFWNLMLLLIFWEVECGHSFVDQCLSLQSQLFEREFILWCVGCWTLWNDRNAVWMGRQISGLAMKCNWVEEFIASFLQAH--------

Query:  -------DRPDSMFSSGEVSYVGPRWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAVSYSPFNVEALAV
                RP S F         P+W  P  G  KLN D +   +    GIGA++R+S G ++ AL+     ++    +EAL +
Subjt:  -------DRPDSMFSSGEVSYVGPRWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAVSYSPFNVEALAV

TrEMBL top hitse value%identityAlignment
A0A6J1BQ49 uncharacterized protein LOC1110047861.3e-1130Show/hide
Query:  HGLVGYTRAMMFWNLMLLLIFWEVECGH-SFVDQCLSLQSQLFEREFILWCVGCWTLWNDRNAVWMGRQISGLAMKCNWVEEFIASFLQAHDRPDSMFSS
        H +    RA   WNLM   +F     G+ SF+D  L L  +L  ++  L     W +W DRN+   G  +S  A++CNW+  +  ++ QA +        
Subjt:  HGLVGYTRAMMFWNLMLLLIFWEVECGH-SFVDQCLSLQSQLFEREFILWCVGCWTLWNDRNAVWMGRQISGLAMKCNWVEEFIASFLQAHDRPDSMFSS

Query:  GEVSYVGPRWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAVSYSPFNVEALAVLE
          V     RW+ P +   K+N D   +  +  TG+G IIRD  G +LVA +  + +  +P   E   +LE
Subjt:  GEVSYVGPRWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAVSYSPFNVEALAVLE

A0A6J1CTE3 uncharacterized protein LOC1110145781.6e-1732.32Show/hide
Query:  LKRVLSSEELYLVCG--IPLVDHGLVGYTRAMMFWNLMLLLIFWEVECGHSFVDQCLSLQSQLFEREFILWCVGCWTLWNDRNAVWMGRQISGLAMKCNW
        +KR +      LVCG  I   DH L    RA   WN++L   F + +  +S  D  L L   L   +F L  VG W +WNDRNA+ M RQI    ++ +W
Subjt:  LKRVLSSEELYLVCG--IPLVDHGLVGYTRAMMFWNLMLLLIFWEVECGHSFVDQCLSLQSQLFEREFILWCVGCWTLWNDRNAVWMGRQISGLAMKCNW

Query:  VEEFIASFLQAHDRPD------SMFSSGEVSYVGPRWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAVSYSPFNVEALAVLEG
        +  ++  F Q  D P          +S     +   W  P  GW K+NVD +       TGIG + R+  G +L       A S+ P   E+LA+ +G
Subjt:  VEEFIASFLQAHDRPD------SMFSSGEVSYVGPRWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAVSYSPFNVEALAVLEG

A0A803Q2K8 Uncharacterized protein8.4e-1126.63Show/hide
Query:  VDHGLVGYTRAMMFWNLMLLLIFWEVECGHSFVDQCLSLQSQLFEREFILWCVGCWTLWNDRNAVWMGRQISGLAMKCNWVEEFIASFLQAH--------
        ++H L    RA   W L  L I +      +  D  L L + L   EF L+ V CW  W++RNA++ G  +       ++   ++A F  A         
Subjt:  VDHGLVGYTRAMMFWNLMLLLIFWEVECGHSFVDQCLSLQSQLFEREFILWCVGCWTLWNDRNAVWMGRQISGLAMKCNWVEEFIASFLQAH--------

Query:  -------DRPDSMFSSGEVSYVGPRWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAVSYSPFNVEALAV
                RP S F+        P+W  P +G  KLN D +        GIGA +R+S G ++ A++  +  +Y    +EA+ +
Subjt:  -------DRPDSMFSSGEVSYVGPRWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAVSYSPFNVEALAV

A2ZKD1 RNase H domain-containing protein4.0e-1329.86Show/hide
Query:  KLKRVLSSEELYLVCGIPLVD--HGLVGYTRAMMFWNLM--LLLIFWEVECGHSFVDQCLSLQSQLFEREFILWCVGCWTLWNDRNAVWMGRQISGLAMK
        K KR L       +CG    D  H L    +A   W+ M     I  +V    S  D  L+L   L + E  ++ +  W +W++RN +  G+ I+ +A+ 
Subjt:  KLKRVLSSEELYLVCGIPLVD--HGLVGYTRAMMFWNLM--LLLIFWEVECGHSFVDQCLSLQSQLFEREFILWCVGCWTLWNDRNAVWMGRQISGLAMK

Query:  CNWVEEFIASFLQAHDRPDSMFSSG-EVSY-------------VGP--RWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAVSYSP
          ++  +++S       P +    G +V++             V P  RW +P  GW KLNVD S+       GIGA++RDSSG+V+ A   S+ V  S 
Subjt:  CNWVEEFIASFLQAHDRPDSMFSSG-EVSY-------------VGP--RWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAVSYSP

Query:  FNVEALAVLEG
           E LA  EG
Subjt:  FNVEALAVLEG

Q2QUC2 Retrotransposon protein, putative, unclassified2.9e-1127.91Show/hide
Query:  KLKRVLSSEELYLVCGIPL--VDHGLVGYTRAMMFWNLM------LLLIFWEVECGHSFVDQCLSLQSQLFEREFILWCVGCWTLWNDRNAVWMGRQISG
        K KR L   E+  +CG     V H L     A+  W  M       L +      G  F DQ  +  ++    E ++ C+  W +W  RN ++ G+    
Subjt:  KLKRVLSSEELYLVCGIPL--VDHGLVGYTRAMMFWNLM------LLLIFWEVECGHSFVDQCLSLQSQLFEREFILWCVGCWTLWNDRNAVWMGRQISG

Query:  LAMKCNWVEEFIASFLQAHDRPDSMFSSG------------EVSY----VGPRWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAV
        +A+   ++E + +S L+    P +    G            E ++    V  RW +P  GW KLNVD SY  ++   GIG ++RDS G+V+ +    +  
Subjt:  LAMKCNWVEEFIASFLQAHDRPDSMFSSG------------EVSY----VGPRWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAV

Query:  SYSPFNVEALAVLEG
          SP   E LA  EG
Subjt:  SYSPFNVEALAVLEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G33160.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein1.4e-0530.17Show/hide
Query:  QSQLFEREFILWCVGCWTLWNDRNAVWMGR---------QISGLAMKCNWVEEFIASFLQAHDRPDSMFSSGEVSYVGPRWVRPLEGWYKLNVDTSYSVD
        Q+Q F  +  LW +  W LWN RN ++  R         Q++ + ++  W E    S + +H        +   S++ P W RP  GW K NVD S+ ++
Subjt:  QSQLFEREFILWCVGCWTLWNDRNAVWMGR---------QISGLAMKCNWVEEFIASFLQAHDRPDSMFSSGEVSYVGPRWVRPLEGWYKLNVDTSYSVD

Query:  AQLTGIGA-IIRDSSG
          + G G  I+RD +G
Subjt:  AQLTGIGA-IIRDSSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAAGCCAGTGAATGGGCATTTAGTGTATGGTTTTGATGCATCTACTTCAGGCAGAAATTTTATTACTGCCAGTCGGGCTTGGGATGTTGAAAAGCTTAAG
CGTGTGTTATCTTCGGAGGAGCTATATTTGGTTTGTGGTATTCCGCTAGTAGACCATGGGTTGGTAGGCTATACTCGGGCCATGATGTTTTGGAATTTAATGTTG
CTGTTGATTTTTTGGGAGGTTGAGTGTGGGCATAGTTTTGTTGATCAATGCTTGTCTTTGCAATCCCAGCTCTTTGAACGGGAGTTTATTCTGTGGTGTGTGGGC
TGCTGGACACTATGGAACGACAGGAATGCAGTGTGGATGGGGAGACAAATTTCGGGTTTGGCTATGAAATGTAATTGGGTTGAGGAGTTTATTGCATCTTTCCTT
CAAGCTCACGACAGGCCTGATTCGATGTTTTCATCTGGGGAGGTCAGTTATGTTGGACCTCGGTGGGTTCGGCCACTTGAAGGTTGGTACAAGTTGAATGTAGAC
ACCTCCTATTCTGTTGATGCGCAGCTTACGGGGATTGGGGCAATTATTCGAGATAGTTCTGGTTCGGTGTTGGTTGCTTTGACTAGTTCGATTGCGGTGTCTTAC
TCTCCTTTTAATGTTGAAGCTTTAGCTGTCTTAGAAGGCTTTGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCAAGCCAGTGAATGGGCATTTAGTGTATGGTTTTGATGCATCTACTTCAGGCAGAAATTTTATTACTGCCAGTCGGGCTTGGGATGTTGAAAAGCTTAAG
CGTGTGTTATCTTCGGAGGAGCTATATTTGGTTTGTGGTATTCCGCTAGTAGACCATGGGTTGGTAGGCTATACTCGGGCCATGATGTTTTGGAATTTAATGTTG
CTGTTGATTTTTTGGGAGGTTGAGTGTGGGCATAGTTTTGTTGATCAATGCTTGTCTTTGCAATCCCAGCTCTTTGAACGGGAGTTTATTCTGTGGTGTGTGGGC
TGCTGGACACTATGGAACGACAGGAATGCAGTGTGGATGGGGAGACAAATTTCGGGTTTGGCTATGAAATGTAATTGGGTTGAGGAGTTTATTGCATCTTTCCTT
CAAGCTCACGACAGGCCTGATTCGATGTTTTCATCTGGGGAGGTCAGTTATGTTGGACCTCGGTGGGTTCGGCCACTTGAAGGTTGGTACAAGTTGAATGTAGAC
ACCTCCTATTCTGTTGATGCGCAGCTTACGGGGATTGGGGCAATTATTCGAGATAGTTCTGGTTCGGTGTTGGTTGCTTTGACTAGTTCGATTGCGGTGTCTTAC
TCTCCTTTTAATGTTGAAGCTTTAGCTGTCTTAGAAGGCTTTGGTTGA
Protein sequenceShow/hide protein sequence
MFKPVNGHLVYGFDASTSGRNFITASRAWDVEKLKRVLSSEELYLVCGIPLVDHGLVGYTRAMMFWNLMLLLIFWEVECGHSFVDQCLSLQSQLFEREFILWCVG
CWTLWNDRNAVWMGRQISGLAMKCNWVEEFIASFLQAHDRPDSMFSSGEVSYVGPRWVRPLEGWYKLNVDTSYSVDAQLTGIGAIIRDSSGSVLVALTSSIAVSY
SPFNVEALAVLEGFG