; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy02g010280 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy02g010280
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionrRNA processing protein-related
Genome locationChr02:27895181..27895678
RNA-Seq ExpressionLcy02g010280
SyntenyLcy02g010280
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0042273 - ribosomal large subunit biogenesis (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0030687 - preribosome, large subunit precursor (cellular component)
GO:0034399 - nuclear periphery (cellular component)
InterPro domainsIPR008610 - Eukaryotic rRNA processing


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7037255.1 putative rRNA-processing protein EBP2-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]5.6e-6788.89Show/hide
Query:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RP
        MVKTDTHM KVKGRLL+EQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKK EIESVKKWRKQRQKSGFAGGDKGG+M+LS EDGKAFE      RP
Subjt:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RP

Query:  GVSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS
        GVSPGDRSGGKARH  GGKGKNLKKK+DFRDSKFGFGGRKSLKKQNTAETTNDIRGFNN S+ S+KRRKRS
Subjt:  GVSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS

XP_022155439.1 probable rRNA-processing protein EBP2 homolog [Momordica charantia]1.6e-6689.41Show/hide
Query:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE-----RPG
        MVKTDTHMEKVKGRLL+EQRKMEEAEERRKAREAK+LAKEIQAQKLKERAKQKK EIESVKKWRKQRQKSGFAGGDKGGEMDL+ EDGKAFE     RPG
Subjt:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE-----RPG

Query:  VSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS
        VSPGDRSGGKARHG GGKGKN KKKRDFRDSKFGFGGRKSLKKQNTAETTNDIR FN G++SS+K+RKRS
Subjt:  VSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS

XP_022926294.1 probable rRNA-processing protein EBP2 homolog [Cucurbita moschata]2.1e-6688.3Show/hide
Query:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RP
        MVKTDTHM KVKGRLL+EQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKK EIESVKKWRKQRQKSGFAGGDKGG+M+LS EDGKAFE      RP
Subjt:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RP

Query:  GVSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS
        GVSPGDRSGGKARH  GGKGKNLKKK+DFRDSKFGFGGRKSLKKQNTAETTNDIRGFN+ S+ S+KRRKRS
Subjt:  GVSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS

XP_022981565.1 probable rRNA-processing protein EBP2 homolog [Cucurbita maxima]1.9e-6789.47Show/hide
Query:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RP
        MVKTDTHM KVKGRLL+EQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKK EIESVKKWRKQRQKSGFAGGDKGGEM+LS EDGKAFE      RP
Subjt:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RP

Query:  GVSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS
        GVSPGDRSGGKARH +GGKGKNLKKK+DFRDSKFGFGGRKSLKKQNTAETTNDIRGFNN S+ S+KRRKRS
Subjt:  GVSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS

XP_038876320.1 probable rRNA-processing protein EBP2 homolog [Benincasa hispida]1.3e-6687.72Show/hide
Query:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RP
        MVKTDTHM+KVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQK KERAKQKK EIESVKKWRKQRQK+GFAGGDKGG+MD S EDGK FE      RP
Subjt:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RP

Query:  GVSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS
        GVSPGDR+GGKARHG GGKGKN KKKRDFRDSKFGFGGRKSL KQNTAETTNDI GFNNGS+SS+KRRKRS
Subjt:  GVSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS

TrEMBL top hitse value%identityAlignment
A0A5D3DB33 Putative rRNA-processing protein EBP2-like protein1.8e-6687.28Show/hide
Query:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RP
        MVKTDTHM+KVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQK KERAKQKK EIESVKKWRKQRQK+ FAGGDKGG+MD S EDGK FE      RP
Subjt:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RP

Query:  GVSPGDRSGGKARH--GSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS
        GVSPGDRSGGKARH  G GGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGS+S++KRRK+S
Subjt:  GVSPGDRSGGKARH--GSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS

A0A6J1DQA0 probable rRNA-processing protein EBP2 homolog7.9e-6789.41Show/hide
Query:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE-----RPG
        MVKTDTHMEKVKGRLL+EQRKMEEAEERRKAREAK+LAKEIQAQKLKERAKQKK EIESVKKWRKQRQKSGFAGGDKGGEMDL+ EDGKAFE     RPG
Subjt:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE-----RPG

Query:  VSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS
        VSPGDRSGGKARHG GGKGKN KKKRDFRDSKFGFGGRKSLKKQNTAETTNDIR FN G++SS+K+RKRS
Subjt:  VSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS

A0A6J1DTZ5 probable rRNA-processing protein EBP2 homolog1.4e-6687.65Show/hide
Query:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE-----RPG
        MVKTDTHMEKVKGRLL+EQRKMEEA+ERRKAREAK+LAKEIQAQKLKERAKQKK EIESVKKWRKQRQKSGFAGGDKGGEMDL+ EDGK FE     RPG
Subjt:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE-----RPG

Query:  VSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS
        VSPGDRSGGK RHG GGKGKN KKKRDFRDSKFGFGGRKSLKKQNTAETT+DIR FN GS+SS+K+RKRS
Subjt:  VSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS

A0A6J1EEP4 probable rRNA-processing protein EBP2 homolog1.0e-6688.3Show/hide
Query:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RP
        MVKTDTHM KVKGRLL+EQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKK EIESVKKWRKQRQKSGFAGGDKGG+M+LS EDGKAFE      RP
Subjt:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RP

Query:  GVSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS
        GVSPGDRSGGKARH  GGKGKNLKKK+DFRDSKFGFGGRKSLKKQNTAETTNDIRGFN+ S+ S+KRRKRS
Subjt:  GVSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS

A0A6J1IZU9 probable rRNA-processing protein EBP2 homolog9.4e-6889.47Show/hide
Query:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RP
        MVKTDTHM KVKGRLL+EQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKK EIESVKKWRKQRQKSGFAGGDKGGEM+LS EDGKAFE      RP
Subjt:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RP

Query:  GVSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS
        GVSPGDRSGGKARH +GGKGKNLKKK+DFRDSKFGFGGRKSLKKQNTAETTNDIRGFNN S+ S+KRRKRS
Subjt:  GVSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS

SwissProt top hitse value%identityAlignment
P36049 rRNA-processing protein EBP22.9e-0532.68Show/hide
Query:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFERPGVSPGD
        MVK+D HM+K+KG+L+ E    +  EE R+ R+ KK  K++Q   L++R  +K+  +E +K  + +R+ +     +    ++  +E GK F+R G   G 
Subjt:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFERPGVSPGD

Query:  RSGGKARHGSGGKGKNLKKKRDFRDSK--FGFGGRKSLKKQNTAETTNDIRGF
        R+   A++G GG  K  K+K D   S    GF  RK   K N    +   R F
Subjt:  RSGGKARHGSGGKGKNLKKKRDFRDSK--FGFGGRKSLKKQNTAETTNDIRGF

Q09958 Probable rRNA-processing protein EBP2 homolog1.2e-0636.42Show/hide
Query:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRK--QRQKSGFAGGDKGGEMDLSIEDGKAFERPGVSP
        M K+DTHM+KV+ RLL  Q   E  E  R+ RE KK A ++Q + L  +  +KK   E+VKK +K  ++Q        K   +D   +D  A   P  + 
Subjt:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRK--QRQKSGFAGGDKGGEMDLSIEDGKAFERPGVSP

Query:  GDRSGGKARHGSGGKGKN------LKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNG
        GDR GG+   G GG G+        + KR  +  KFG+GG+K   K+N  E+ ND+ G   G
Subjt:  GDRSGGKARHGSGGKGKN------LKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNG

Q9D903 Probable rRNA-processing protein EBP21.2e-0631.79Show/hide
Query:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFERPGVSPGD
        M K+D  M+K++ +L ++Q  ME++E+ ++ R  +K  K++Q + L++R ++K   + ++KK++K     GF+      ++D    D K  ER       
Subjt:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFERPGVSPGD

Query:  RSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGF
        ++GGK +  S  KG N K++  +++ KFGFGG+K   K NT E+ +D+  F
Subjt:  RSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGF

Q9I8J6 Probable rRNA-processing protein EBP28.0e-0834.57Show/hide
Query:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRK-QRQKSGFAGGDKGGEMDLSIEDGKAFERPGVSPG
        M KTD HM+K++ +L  +Q  ME++E+ ++ R  +K  K++Q + L++R K+K   +  +KK++K    K  F  GD               + P  +P 
Subjt:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRK-QRQKSGFAGGDKGGEMDLSIEDGKAFERPGVSPG

Query:  DRSGGKARHGSGGKGKNL-KKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDK
        +++GG A   +  K KN    KR ++D KFGFGG+K   K NT  + ND+ GF  GSV+  K
Subjt:  DRSGGKARHGSGGKGKNL-KKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDK

Q9LUJ5 Probable rRNA-processing protein EBP2 homolog3.5e-4363.74Show/hide
Query:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RP
        MVK+D HMEKVK RLL E++++EE+EERRKAR+ K++AKE+Q+QK+KERAK+KK  IESVKKWRKQRQ+SGF+  DK GE +L  E GK+F+      RP
Subjt:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RP

Query:  GVSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIR-GFNNGSVSSDKRRKR
        GVSPGDRSGGK R  S    +   KKR+FRDSKFG GGRK L KQNTAETTND + GF  G  S +KR+KR
Subjt:  GVSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIR-GFNNGSVSSDKRRKR

Arabidopsis top hitse value%identityAlignment
AT3G22660.1 rRNA processing protein-related2.5e-4463.74Show/hide
Query:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RP
        MVK+D HMEKVK RLL E++++EE+EERRKAR+ K++AKE+Q+QK+KERAK+KK  IESVKKWRKQRQ+SGF+  DK GE +L  E GK+F+      RP
Subjt:  MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RP

Query:  GVSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIR-GFNNGSVSSDKRRKR
        GVSPGDRSGGK R  S    +   KKR+FRDSKFG GGRK L KQNTAETTND + GF  G  S +KR+KR
Subjt:  GVSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIR-GFNNGSVSSDKRRKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAGACAGATACTCACATGGAAAAAGTGAAAGGTCGGCTGCTGTCCGAACAGAGAAAGATGGAGGAAGCTGAGGAAAGAAGGAAGGCTAGAGAAGCAAAGAAATT
AGCTAAAGAGATTCAAGCTCAGAAGCTAAAGGAGAGGGCTAAGCAGAAGAAAGGGGAGATTGAATCTGTTAAGAAATGGAGGAAGCAGAGGCAAAAGAGTGGTTTTGCTG
GAGGTGATAAAGGTGGTGAGATGGACTTGTCCATTGAAGATGGAAAGGCATTTGAGAGGCCGGGGGTGTCTCCTGGTGATCGCTCGGGAGGGAAGGCAAGACATGGAAGC
GGAGGAAAGGGGAAAAATCTGAAGAAGAAGAGAGATTTCAGGGATTCCAAGTTCGGATTCGGCGGGAGGAAAAGTTTGAAAAAGCAAAACACAGCTGAGACAACAAATGA
TATTAGGGGCTTCAACAATGGCAGTGTGTCAAGCGACAAAAGAAGGAAGAGGTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAGACAGATACTCACATGGAAAAAGTGAAAGGTCGGCTGCTGTCCGAACAGAGAAAGATGGAGGAAGCTGAGGAAAGAAGGAAGGCTAGAGAAGCAAAGAAATT
AGCTAAAGAGATTCAAGCTCAGAAGCTAAAGGAGAGGGCTAAGCAGAAGAAAGGGGAGATTGAATCTGTTAAGAAATGGAGGAAGCAGAGGCAAAAGAGTGGTTTTGCTG
GAGGTGATAAAGGTGGTGAGATGGACTTGTCCATTGAAGATGGAAAGGCATTTGAGAGGCCGGGGGTGTCTCCTGGTGATCGCTCGGGAGGGAAGGCAAGACATGGAAGC
GGAGGAAAGGGGAAAAATCTGAAGAAGAAGAGAGATTTCAGGGATTCCAAGTTCGGATTCGGCGGGAGGAAAAGTTTGAAAAAGCAAAACACAGCTGAGACAACAAATGA
TATTAGGGGCTTCAACAATGGCAGTGTGTCAAGCGACAAAAGAAGGAAGAGGTCATAG
Protein sequenceShow/hide protein sequence
MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFERPGVSPGDRSGGKARHGS
GGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS