; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy02g013880 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy02g013880
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionYqgFc domain-containing protein
Genome locationChr02:39750165..39753875
RNA-Seq ExpressionLcy02g013880
SyntenyLcy02g013880
Gene Ontology termsGO:0000967 - rRNA 5'-end processing (biological process)
InterPro domainsIPR005227 - Putative pre-16S rRNA nuclease
IPR006641 - YqgF/RNase H-like domain
IPR012337 - Ribonuclease H-like superfamily
IPR037027 - YqgF/RNase H-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7036046.1 hypothetical protein SDJN02_02846 [Cucurbita argyrosperma subsp. argyrosperma]1.6e-7879.38Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPD--------
        MKYV+PLNLFRDLLK NALERGRFLGLDVGDKYVGLAVSDPDNKIA+PLSVL RKKTNMHL+A DFQRLISELSL+GFIVGYPF GQRRN D        
Subjt:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPD--------

Query:  -----------------AVQVKIFIDDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLEER
                         AVQVKIFIDDLCKTGKLEGVKYTFW+ECFTSKNVELLIKPLKLPPILSKTI+DKFAAVGILQGYLD+FNR+ +LEER
Subjt:  -----------------AVQVKIFIDDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLEER

XP_022957830.1 uncharacterized protein LOC111459253 [Cucurbita moschata]1.9e-8290.53Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFI
        MKYV+PLNLFRDLLK NALERGRFLGLDVGDKYVGLAVSDPDNKIA+PLSVL RKKTNMHL+A DFQRLISELSL+GFIVGYPF GQRRN DAVQVKIFI
Subjt:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLEER
        DDLCKTGKLEGVKYTFW+ECFTSKNVELLIKPLKLPPILSKTI+DKFAAVGILQGYLD+FNR+ +L+ER
Subjt:  DDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLEER

XP_022995255.1 uncharacterized protein LOC111490857 [Cucurbita maxima]8.4e-8391.12Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFI
        MKYV+PLNLFRDLLK NALERGRFLGLDVGDKYVGLAVSDPDNKIA+PLSVL RKKTNMHL+A DFQRLISELSL+GFIVGYPF GQRRN DAVQVKIFI
Subjt:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLEER
        DDLCKTGKLEGVKYTFW+ECFTSKNVELLIKPLKLPPILSKTI+DKFAAVGILQGYLD+FNR+ +LEER
Subjt:  DDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLEER

XP_023533829.1 uncharacterized protein LOC111795559 [Cucurbita pepo subsp. pepo]4.2e-8290.53Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFI
        MKYV+PLNLFRDLLK NALERGRFLGLDVGDKYVGLAVSDPDNKIA+PLSVL RKKTNMHL+A DFQRLISELSL+GFIVGYPF GQRRN DAVQVKIFI
Subjt:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLEER
        DDLCKTGKLEGVKYTFW+ECFTSKNVELLIKPLKLPPILSKTI+DKFAAVGILQ YLD+FNR+ +LEER
Subjt:  DDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLEER

XP_038875331.1 putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida]5.7e-7986.98Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFI
        MKYVKPLNLFRDLLKRN LE GR LGLDVGDKYVGLAVSDPDNKIA+PLSVL+RKKT MHL+A+DF+RLIS+ SLAGFIVGYP    RRNPDAVQVKIFI
Subjt:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLEER
        D+LCKTGKLE VKYTFW+ECFTSKNVELLIKPLKLPPILSKT+MDKFAAVGILQGYLDYFNR+ +LEER
Subjt:  DDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLEER

TrEMBL top hitse value%identityAlignment
A0A0A0KMK7 YqgFc domain-containing protein5.9e-7483.33Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFI
        MKYV+PL LFRDL KR+ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVLLRKKT M L+AQDFQ++ISE SLAGFIVGYPF   R NPDA+QVKIFI
Subjt:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLEE
        DDLCKTGKLEGVKYTFW+ECFTSKNVELLIKPL L P +SKTI+DKFAAVGILQGYLDYFNR+ +L E
Subjt:  DDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLEE

A0A5B6YGZ2 YqgFc domain-containing protein2.6e-6979.04Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFI
        MKY+KP NLFRDLLK N LERGR LGLDVGDKYVGLAVSD  NKIA+PLSVLLRKKTN+ L+A DFQ LISELSLAGFI GYPF  QR +PDAVQVK+FI
Subjt:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLE
        DDLCKTGK EG++YTFW+ECFTSKNVELL+KPL L P+ +KTI+DKFAAVGILQGYLDY NR   L+
Subjt:  DDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLE

A0A6J1E3H7 uncharacterized protein LOC1110261451.5e-7787.35Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFI
        MKYVKPLN+FRDLL RN LERGRFLGLDVGDKYVGLAVSDPDN IA+PLSVLLRKKT MHL+A+D QRLISELSLAGFIVGYPF  QRRN DAVQVKIFI
Subjt:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDL
        DDLCKTG LEGVKYTFW+ECFTSKNVELLIKPL+LPP+LSKTI+DKFAAVGILQGYLDY NR+ +L
Subjt:  DDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDL

A0A6J1H0B7 uncharacterized protein LOC1114592539.1e-8390.53Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFI
        MKYV+PLNLFRDLLK NALERGRFLGLDVGDKYVGLAVSDPDNKIA+PLSVL RKKTNMHL+A DFQRLISELSL+GFIVGYPF GQRRN DAVQVKIFI
Subjt:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLEER
        DDLCKTGKLEGVKYTFW+ECFTSKNVELLIKPLKLPPILSKTI+DKFAAVGILQGYLD+FNR+ +L+ER
Subjt:  DDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLEER

A0A6J1K3L4 uncharacterized protein LOC1114908574.1e-8391.12Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFI
        MKYV+PLNLFRDLLK NALERGRFLGLDVGDKYVGLAVSDPDNKIA+PLSVL RKKTNMHL+A DFQRLISELSL+GFIVGYPF GQRRN DAVQVKIFI
Subjt:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLEER
        DDLCKTGKLEGVKYTFW+ECFTSKNVELLIKPLKLPPILSKTI+DKFAAVGILQGYLD+FNR+ +LEER
Subjt:  DDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLEER

SwissProt top hitse value%identityAlignment
A4XKC6 Putative pre-16S rRNA nuclease4.3e-1332.62Show/hide
Query:  RFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKI-FIDDLC-KTGKLEGVKYTFWNEC
        R L LD+G + +G+A+SDP    A P  VL  +K +++       ++ +E  +   ++GYP    + +PD    K+  ID++C +  +   V    W+E 
Subjt:  RFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKI-FIDDLC-KTGKLEGVKYTFWNEC

Query:  FTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFN
        F++K VE +++   +     K ++DK AAV ILQGYLD+ N
Subjt:  FTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFN

B8I4S7 Putative pre-16S rRNA nuclease6.2e-1230.34Show/hide
Query:  RFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFH-GQRRNPDAVQVKIFIDDLCKTGKLEGVKYTFWNECF
        R LG+D GD  +G+A+SDP    A  L  +++ K ++         +I+E S+   ++GYP +    + P   + + FI  +   G+   +K   W+E  
Subjt:  RFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFH-GQRRNPDAVQVKIFIDDLCKTGKLEGVKYTFWNECF

Query:  TSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYF--NRKS
        T+ +    +  L +     K I+D  +AV ILQGYLD    N+KS
Subjt:  TSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYF--NRKS

B9MRK7 Putative pre-16S rRNA nuclease1.6e-1235.21Show/hide
Query:  RFLGLDVGDKYVGLAVSDPDNKIATP-LSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKI-FIDDLC-KTGKLEGVKYTFWNE
        R L LD+G+  VG+A+SDP    A P +++ LR K     + ++  ++    ++   ++GYP    + +PD    K+  ID++  K G    V+   W+E
Subjt:  RFLGLDVGDKYVGLAVSDPDNKIATP-LSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKI-FIDDLC-KTGKLEGVKYTFWNE

Query:  CFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFN
         F++K VE +I   +L     K I+DK AAV ILQGYLD++N
Subjt:  CFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFN

Q1QL26 Putative pre-16S rRNA nuclease6.2e-1232.87Show/hide
Query:  ERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLIS---ELSLAGFIVGYPFH-GQRRNPDAVQVKIFIDDLCKTGKLEGVKYT
        ERG  +GLD+G K +G+AVSDPD ++AT +  L RK         D  RL++   E + AGF++G P +      P A   + F  +L    +L  +   
Subjt:  ERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLIS---ELSLAGFIVGYPFH-GQRRNPDAVQVKIFIDDLCKTGKLEGVKYT

Query:  FWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLD
         W+E  ++  VE  +  + +       ++D+ AA+ ILQG LD
Subjt:  FWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLD

Q52673 Putative pre-16S rRNA nuclease1.1e-1134.06Show/hide
Query:  GRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFH-GQRRNPDAVQVKIFIDDLCKTGKLEGVKYTFWNEC
        G   GLD+G K +G+AVSD    IATPL  + R+K ++ L   D  + ++E  +AGF++G P +      P A   + F  +L    KL  +  TFW+E 
Subjt:  GRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFH-GQRRNPDAVQVKIFIDDLCKTGKLEGVKYTFWNEC

Query:  FTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLD
         ++   E  +    L       ++D  AA  ILQG LD
Subjt:  FTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLD

Arabidopsis top hitse value%identityAlignment
AT3G52905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.0e-5158.08Show/hide
Query:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFI
        MKYVKPL+L  + LK      GRFLGLDVGDKYVGLA+SDP N +A+PLSVLLRKK+N+ L+A DFQ L+   S++G +VGYPF       D V V +FI
Subjt:  MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLE
        ++L KT KL+ VKYT+W+E  +SK VEL++KPL L P+  KT++DK AAV ILQ YLDY NR  + E
Subjt:  DDLCKTGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTACGTGAAGCCATTGAACTTGTTTCGCGATTTGTTGAAGAGAAATGCCCTTGAACGTGGCCGTTTTCTCGGTTTGGATGTTGGTGATAAGTATGTTGGT
TTGGCCGTCTCTGACCCAGATAATAAAATCGCCACACCTCTTAGTGTTTTGCTCAGGAAGAAAACAAACATGCATTTGGTGGCTCAGGATTTTCAGAGATTGATC
TCTGAACTCTCTCTGGCGGGGTTCATTGTTGGATACCCTTTCCATGGACAACGACGCAACCCCGATGCTGTGCAAGTGAAGATCTTCATTGATGACCTTTGTAAA
ACTGGAAAACTTGAAGGTGTAAAATATACCTTTTGGAATGAGTGCTTTACATCAAAGAATGTGGAACTACTGATAAAGCCATTGAAACTGCCTCCTATTTTGTCA
AAGACAATAATGGACAAGTTTGCTGCTGTTGGAATACTTCAGGGTTACTTGGATTATTTTAACAGAAAATCGGATTTGGAAGAGAGGAAGAGTAAGATGGACTAT
ATGGGGGATCAGACACTTGATTCTCCAAGATGGAACAAATTGTTTTGA
mRNA sequenceShow/hide mRNA sequence
CAAATTGGGATTTCTTCGAAAAATGAACAACGTTGCAGATTCGGGCTCAATTCGTGTTTCTTTTGTATTCAAATTTGCAGCACTGATTGTACGTTTTGGGCATCA
AGGGCGCGAAGCTGAAAATGGTTTGCACGAATCATCGTGCTTCACTGAATTAGATAGTAGTCCAAGATGAAGTACGTGAAGCCATTGAACTTGTTTCGCGATTTG
TTGAAGAGAAATGCCCTTGAACGTGGCCGTTTTCTCGGTTTGGATGTTGGTGATAAGTATGTTGGTTTGGCCGTCTCTGACCCAGATAATAAAATCGCCACACCT
CTTAGTGTTTTGCTCAGGAAGAAAACAAACATGCATTTGGTGGCTCAGGATTTTCAGAGATTGATCTCTGAACTCTCTCTGGCGGGGTTCATTGTTGGATACCCT
TTCCATGGACAACGACGCAACCCCGATGCTGTGCAAGTGAAGATCTTCATTGATGACCTTTGTAAAACTGGAAAACTTGAAGGTGTAAAATATACCTTTTGGAAT
GAGTGCTTTACATCAAAGAATGTGGAACTACTGATAAAGCCATTGAAACTGCCTCCTATTTTGTCAAAGACAATAATGGACAAGTTTGCTGCTGTTGGAATACTT
CAGGGTTACTTGGATTATTTTAACAGAAAATCGGATTTGGAAGAGAGGAAGAGTAAGATGGACTATATGGGGGATCAGACACTTGATTCTCCAAGATGGAACAAA
TTGTTTTGAAGCTCAGTCCAAAAAGGGACCATGGATCATTCTTTGATATTATCGCTTGTTTTATCTTAAATAAGTGAATTATTCGCTCAAAATTTACTAATTAGC
TAATGAGGTTCTTTTCATTTTTTCTTAATGAAAGTTTTGATTCTCATGGGAAAAAAAAAAACTTCAATGGGCCAAAGCGAGTTTAACTCAGCTATAATTGACACG
TACCATCGACCAAGAGGTCAGACGTTTGAATCTCCCTACTCCCAAATGTCGATGTACT
Protein sequenceShow/hide protein sequence
MKYVKPLNLFRDLLKRNALERGRFLGLDVGDKYVGLAVSDPDNKIATPLSVLLRKKTNMHLVAQDFQRLISELSLAGFIVGYPFHGQRRNPDAVQVKIFIDDLCK
TGKLEGVKYTFWNECFTSKNVELLIKPLKLPPILSKTIMDKFAAVGILQGYLDYFNRKSDLEERKSKMDYMGDQTLDSPRWNKLF