; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy02g014090 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy02g014090
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionmethyl-CpG-binding domain-containing protein 13-like
Genome locationChr02:40017606..40022578
RNA-Seq ExpressionLcy02g014090
SyntenyLcy02g014090
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR001739 - Methyl-CpG DNA binding
IPR016177 - DNA-binding domain superfamily
IPR038945 - Methyl-CpG-binding domain-containing protein 13-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143925.1 methyl-CpG-binding domain-containing protein 13 [Cucumis sativus]2.3e-9390.81Show/hide
Query:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG
        MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLE+GKSFYYKDDVIGYIKSTQSQKSQPTSR +KTQSGNSP+QLTVK+NEHPEWLP GWKVESRTRMSG
Subjt:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG

Query:  SNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP
        SNVG VYKCYIDPV  +RFYSKPEVFR+LRTVKNKLCTLKER+TS    SRS+VVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP
Subjt:  SNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP

XP_008437227.1 PREDICTED: uncharacterized protein LOC103482721 isoform X1 [Cucumis melo]4.0e-9390.32Show/hide
Query:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG
        MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLE+GKSFYYKDDV+GYIKSTQSQKSQPTSR IKTQSGNSPVQ TVK+NEHPEWLP GWKVESRTRMSG
Subjt:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG

Query:  SNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDPV
        SNVG VYKCYIDPV  +RFYSKPEVFR+LRTVKNKLCTLKER+TS    SRS+VVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP+
Subjt:  SNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDPV

XP_008437229.1 PREDICTED: uncharacterized protein LOC103482721 isoform X3 [Cucumis melo]5.2e-9390.81Show/hide
Query:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG
        MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLE+GKSFYYKDDV+GYIKSTQSQKSQPTSR IKTQSGNSPVQ TVK+NEHPEWLP GWKVESRTRMSG
Subjt:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG

Query:  SNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP
        SNVG VYKCYIDPV  +RFYSKPEVFR+LRTVKNKLCTLKER+TS    SRS+VVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP
Subjt:  SNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP

XP_023532854.1 methyl-CpG-binding domain-containing protein 13-like isoform X2 [Cucurbita pepo subsp. pepo]4.4e-9290.27Show/hide
Query:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG
        MV+KGSPDWLPSGWTVQ+KVQKTGRKIRFYTNLESGKSFY KDDVIGYIKS QSQKS PTS RIKTQSGNSPVQLTVK NE PEWLP GWKVESRTRMSG
Subjt:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG

Query:  SNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP
        SNVGGVYKCYIDPV GNRFYSKPEVFRYLRTVKNK+CTLKERKTS    SR+ VVIEHYKDEDLPPGWIKEIKI+EKADGIRKDP
Subjt:  SNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP

XP_038875367.1 methyl-CpG-binding domain-containing protein 13-like isoform X1 [Benincasa hispida]2.2e-9693.51Show/hide
Query:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG
        MV+KGSPDWLPSGWTVQYKVQKTGRKIRFYTNLE+GKSFYYKDDVIGYIKSTQSQKSQPT RRIKTQSGNSPVQ+TVKTNEHPEWLP GWKVESRTRMSG
Subjt:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG

Query:  SNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP
        SNVG VYKCYIDPV  NRFYSKPEVFRYLRTVKNKLCTLKER+TS + NSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP
Subjt:  SNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP

TrEMBL top hitse value%identityAlignment
A0A0A0KKL3 Uncharacterized protein1.1e-9390.81Show/hide
Query:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG
        MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLE+GKSFYYKDDVIGYIKSTQSQKSQPTSR +KTQSGNSP+QLTVK+NEHPEWLP GWKVESRTRMSG
Subjt:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG

Query:  SNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP
        SNVG VYKCYIDPV  +RFYSKPEVFR+LRTVKNKLCTLKER+TS    SRS+VVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP
Subjt:  SNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP

A0A1S3AT59 uncharacterized protein LOC103482721 isoform X23.6e-9290.32Show/hide
Query:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG
        MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLE+GKSFYYKDDV+GYIKSTQSQKSQPTSR IKTQSGNSPVQ TVK+NEHPEWLP GWKVESRTRMSG
Subjt:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG

Query:  SNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDPV
        SNVG VYKCYIDPV  +RFYSKPEVFR+LRTVKNKLCTLKER+TS    SRS+VVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP+
Subjt:  SNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDPV

A0A1S3ATN0 uncharacterized protein LOC103482721 isoform X32.5e-9390.81Show/hide
Query:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG
        MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLE+GKSFYYKDDV+GYIKSTQSQKSQPTSR IKTQSGNSPVQ TVK+NEHPEWLP GWKVESRTRMSG
Subjt:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG

Query:  SNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP
        SNVG VYKCYIDPV  +RFYSKPEVFR+LRTVKNKLCTLKER+TS    SRS+VVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP
Subjt:  SNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP

A0A1S3AU21 uncharacterized protein LOC103482721 isoform X11.9e-9390.32Show/hide
Query:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG
        MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLE+GKSFYYKDDV+GYIKSTQSQKSQPTSR IKTQSGNSPVQ TVK+NEHPEWLP GWKVESRTRMSG
Subjt:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG

Query:  SNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDPV
        SNVG VYKCYIDPV  +RFYSKPEVFR+LRTVKNKLCTLKER+TS    SRS+VVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP+
Subjt:  SNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDPV

A0A6J1H0N5 methyl-CpG-binding domain-containing protein 13-like2.8e-9290.27Show/hide
Query:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG
        MV+KGSPDWLPSGWTVQ+KVQKTGRKIRFYTNLESGKSFY KDDVIGYIKS QSQKS PTS RIKTQSGNSPVQLTVK NE PEWLP GWKVESRTRMSG
Subjt:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG

Query:  SNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP
        SNVGGVYKCYIDPV GNRFYSKPEVFRYLRTVKNK+CTLKERKTS    SR+ VVIEHYKDEDLPPGWIKEIKI+EKADGIRKDP
Subjt:  SNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDP

SwissProt top hitse value%identityAlignment
Q9FJF4 Methyl-CpG-binding domain-containing protein 77.7e-0731.75Show/hide
Query:  LPSGWTVQYKVQKTGRKI-RFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSGSNVGGVYK
        LP GW+V+   +K    I ++Y   ++GK F     V  Y++ +++   Q   R ++ + G+S              LPDGW VE + R S S++    +
Subjt:  LPSGWTVQYKVQKTGRKI-RFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSGSNVGGVYK

Query:  CYIDPVNGNRFYSKPEVFRYLRTVKN
         YI+P  GN+F S   V RYL +V N
Subjt:  CYIDPVNGNRFYSKPEVFRYLRTVKN

Q9LTJ1 Methyl-CpG-binding domain-containing protein 61.7e-0643.33Show/hide
Query:  WLPDGWKVESRTRMSGSNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKT
        WLP GW+VE + R SG+  G V K Y +P  G +F S+ EV  YL    +K  T K   T
Subjt:  WLPDGWKVESRTRMSGSNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKT

Q9SNC0 Methyl-CpG-binding domain-containing protein 53.8e-0640.58Show/hide
Query:  WLPDGWKVESRTRMSGSNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQ
        WLP  W+ E R R SG+  G V K Y +P+ G +F SK EV  YL     K    K  KT+++ +S S+
Subjt:  WLPDGWKVESRTRMSGSNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQ

Arabidopsis top hitse value%identityAlignment
AT1G63240.1 unknown protein4.0e-1132.26Show/hide
Query:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG
        + A  +PDWLP GW     V K GR+ R YT L +GK    KD V+ YIK  + ++ +    + + ++    +Q     +E P WLPD  K E      G
Subjt:  MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSG

Query:  SNVGGVYKCYIDPVNGNRFYSKPE
           G  YK  ++    N F + P+
Subjt:  SNVGGVYKCYIDPVNGNRFYSKPE

AT3G46580.1 methyl-CPG-binding domain protein 52.7e-0740.58Show/hide
Query:  WLPDGWKVESRTRMSGSNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQ
        WLP  W+ E R R SG+  G V K Y +P+ G +F SK EV  YL     K    K  KT+++ +S S+
Subjt:  WLPDGWKVESRTRMSGSNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQ

AT5G59380.1 methyl-CPG-binding domain 61.2e-0743.33Show/hide
Query:  WLPDGWKVESRTRMSGSNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKT
        WLP GW+VE + R SG+  G V K Y +P  G +F S+ EV  YL    +K  T K   T
Subjt:  WLPDGWKVESRTRMSGSNVGGVYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKT

AT5G59800.1 methyl-CPG-binding domain 75.5e-0831.75Show/hide
Query:  LPSGWTVQYKVQKTGRKI-RFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSGSNVGGVYK
        LP GW+V+   +K    I ++Y   ++GK F     V  Y++ +++   Q   R ++ + G+S              LPDGW VE + R S S++    +
Subjt:  LPSGWTVQYKVQKTGRKI-RFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSGSNVGGVYK

Query:  CYIDPVNGNRFYSKPEVFRYLRTVKN
         YI+P  GN+F S   V RYL +V N
Subjt:  CYIDPVNGNRFYSKPEVFRYLRTVKN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGCTAAGGGTTCGCCGGACTGGCTTCCCTCCGGCTGGACTGTGCAGTATAAAGTCCAGAAGACTGGCCGGAAAATTAGGTTCTATACAAACTTGGAGAGT
GGAAAAAGCTTTTATTATAAGGATGATGTTATTGGCTATATTAAAAGCACTCAGTCTCAAAAGTCTCAACCAACTTCAAGGCGCATCAAGACTCAATCAGGAAAT
AGTCCTGTGCAACTCACAGTGAAGACAAATGAACACCCCGAATGGTTGCCCGATGGCTGGAAAGTGGAGTCAAGAACACGAATGAGTGGTTCAAATGTTGGAGGT
GTTTACAAGTGTTACATTGATCCAGTGAATGGCAACAGATTTTATTCTAAGCCAGAGGTATTTCGCTACCTCAGAACAGTGAAGAACAAATTGTGCACATTAAAA
GAGAGAAAGACAAGCAAAGACGCGAACTCTAGAAGCCAAGTTGTTATTGAGCATTATAAAGATGAAGATTTGCCGCCCGGATGGATAAAGGAGATCAAGATCAAA
GAAAAAGCAGATGGCATCAGGAAAGATCCCGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGCTAAGGGTTCGCCGGACTGGCTTCCCTCCGGCTGGACTGTGCAGTATAAAGTCCAGAAGACTGGCCGGAAAATTAGGTTCTATACAAACTTGGAGAGT
GGAAAAAGCTTTTATTATAAGGATGATGTTATTGGCTATATTAAAAGCACTCAGTCTCAAAAGTCTCAACCAACTTCAAGGCGCATCAAGACTCAATCAGGAAAT
AGTCCTGTGCAACTCACAGTGAAGACAAATGAACACCCCGAATGGTTGCCCGATGGCTGGAAAGTGGAGTCAAGAACACGAATGAGTGGTTCAAATGTTGGAGGT
GTTTACAAGTGTTACATTGATCCAGTGAATGGCAACAGATTTTATTCTAAGCCAGAGGTATTTCGCTACCTCAGAACAGTGAAGAACAAATTGTGCACATTAAAA
GAGAGAAAGACAAGCAAAGACGCGAACTCTAGAAGCCAAGTTGTTATTGAGCATTATAAAGATGAAGATTTGCCGCCCGGATGGATAAAGGAGATCAAGATCAAA
GAAAAAGCAGATGGCATCAGGAAAGATCCCGTATGA
Protein sequenceShow/hide protein sequence
MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLESGKSFYYKDDVIGYIKSTQSQKSQPTSRRIKTQSGNSPVQLTVKTNEHPEWLPDGWKVESRTRMSGSNVGG
VYKCYIDPVNGNRFYSKPEVFRYLRTVKNKLCTLKERKTSKDANSRSQVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDPV