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Lcy02g014830 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy02g014830
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr02:41167159..41167678
RNA-Seq ExpressionLcy02g014830
SyntenyLcy02g014830
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR40694.1 hypothetical protein CICLE_v10027161mg, partial [Citrus clementina]9.1e-0836.75Show/hide
Query:  DRALSGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMSFFPMMIESDSKRVCEIMRGEMVKFSDLKTLVSDALEAW-----PIEFVF
        DRA  G G+ V N  GEVM +++    F RD +FVE  A+ +GL+L  ++   P +IESDS  V  ++  ++    ++  L+SD  E         +  F
Subjt:  DRALSGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMSFFPMMIESDSKRVCEIMRGEMVKFSDLKTLVSDALEAW-----PIEFVF

Query:  SFREGNRLAHHLAKLAL
        + R  N +AHHL+KLAL
Subjt:  SFREGNRLAHHLAKLAL

XP_006487889.1 uncharacterized protein LOC102617714 [Citrus sinensis]7.7e-0733.63Show/hide
Query:  LSGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMSFFPMMIESDSKRVCEIMRGEMVKFSDLKTLVSDALEAWPIEFVFSF----RE
        ++G G+ + N NGEV+ +A++   F   S  +E  A++ G+K A    F PM+IE+DS+ V ++   + V+  +   +++D  E+      FS     RE
Subjt:  LSGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMSFFPMMIESDSKRVCEIMRGEMVKFSDLKTLVSDALEAWPIEFVFSF----RE

Query:  GNRLAHHLAKLAL
         N  AH LAK AL
Subjt:  GNRLAHHLAKLAL

XP_015388332.1 uncharacterized protein LOC107178077 [Citrus sinensis]3.4e-0735.4Show/hide
Query:  LSGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMSFFPMMIESDSKRVCEIMRGEMVKFSDLKTLVSDALEAWPIEFVFSF----RE
        ++G G+ + N NGEV+ +AV+   F   S  +E  A++ G+K A    F PM+IE+DS+ V ++   + V  ++   L++D  E+      FS     RE
Subjt:  LSGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMSFFPMMIESDSKRVCEIMRGEMVKFSDLKTLVSDALEAWPIEFVFSF----RE

Query:  GNRLAHHLAKLAL
         N  AH LAK AL
Subjt:  GNRLAHHLAKLAL

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]3.4e-0733.04Show/hide
Query:  SGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMSFFPMMIESDSKRVCEIMRGEMVKFSDLKTLVSDALEAWP----IEFVFSFREG
        +G G+ + N  G+VM SA +  E ++  D  E    V+GL+LA+++   P+++E+DS R+  +        S+   +V  A   W       F F  REG
Subjt:  SGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMSFFPMMIESDSKRVCEIMRGEMVKFSDLKTLVSDALEAWP----IEFVFSFREG

Query:  NRLAHHLAKLAL
        N+ AH LA+ AL
Subjt:  NRLAHHLAKLAL

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]1.5e-0733.91Show/hide
Query:  LSGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMSFFPMMIESDSKRVCEIMRGEMVKFSDLKTLVSD-----ALEAWPIEFVFSFR
        ++G G+ + +  G V ++A+R      D D+VEG+A+ +G+ LA E  F    IE+DS R+  ++  + V  S++  L S      +  A  + F F+ R
Subjt:  LSGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMSFFPMMIESDSKRVCEIMRGEMVKFSDLKTLVSD-----ALEAWPIEFVFSFR

Query:  EGNRLAHHLAKLALS
         GN  AH LA+LAL+
Subjt:  EGNRLAHHLAKLALS

TrEMBL top hitse value%identityAlignment
A0A5C7GQX3 RNase H domain-containing protein1.2e-0531.74Show/hide
Query:  WAAGFVESFRRANALDRVERRMGSG------------------DRAL------SGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMS
        WA  F++ FR+++A   V+ R+ S                   D AL      +G G+ + N  G+VM+S+ +           E  A+++GL+LA    
Subjt:  WAAGFVESFRRANALDRVERRMGSG------------------DRAL------SGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMS

Query:  FFPMMIESDSKRVC-EIMRGEMVKFSDLKTLVSDALEAWPIEFVFSFRE----GNRLAHHLAKLALS
        FFP ++ESD+  V  +I R E +  SD+  ++ D L        FSFR      N++AH LAKLALS
Subjt:  FFPMMIESDSKRVC-EIMRGEMVKFSDLKTLVSDALEAWPIEFVFSFRE----GNRLAHHLAKLALS

A0A6J1CIF1 uncharacterized protein LOC1110112371.7e-0733.04Show/hide
Query:  SGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMSFFPMMIESDSKRVCEIMRGEMVKFSDLKTLVSDALEAWP----IEFVFSFREG
        +G G+ + N  G+VM SA +  E ++  D  E    V+GL+LA+++   P+++E+DS R+  +        S+   +V  A   W       F F  REG
Subjt:  SGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMSFFPMMIESDSKRVCEIMRGEMVKFSDLKTLVSDALEAWP----IEFVFSFREG

Query:  NRLAHHLAKLAL
        N+ AH LA+ AL
Subjt:  NRLAHHLAKLAL

A0A6J1DBJ7 uncharacterized protein LOC1110189737.5e-0833.91Show/hide
Query:  LSGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMSFFPMMIESDSKRVCEIMRGEMVKFSDLKTLVSD-----ALEAWPIEFVFSFR
        ++G G+ + +  G V ++A+R      D D+VEG+A+ +G+ LA E  F    IE+DS R+  ++  + V  S++  L S      +  A  + F F+ R
Subjt:  LSGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMSFFPMMIESDSKRVCEIMRGEMVKFSDLKTLVSD-----ALEAWPIEFVFSFR

Query:  EGNRLAHHLAKLALS
         GN  AH LA+LAL+
Subjt:  EGNRLAHHLAKLALS

A0A7C9A7V4 Uncharacterized protein1.1e-0632.2Show/hide
Query:  SGDRALSGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMSFFPMMIESDSKRVCEIMRGEMVKFSDLKTLVSDALEAWP----IEFV
        +G   + G G+ V + NG+V + A R      + + VE +A++ GL++  +  F  + +E+DSK+V + + G+    +   T + DAL        I F 
Subjt:  SGDRALSGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMSFFPMMIESDSKRVCEIMRGEMVKFSDLKTLVSDALEAWP----IEFV

Query:  FSFREGNRLAHHLAKLAL
        F  R  NR+AH LA+LAL
Subjt:  FSFREGNRLAHHLAKLAL

V4UMR3 RNase H domain-containing protein (Fragment)4.4e-0836.75Show/hide
Query:  DRALSGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMSFFPMMIESDSKRVCEIMRGEMVKFSDLKTLVSDALEAW-----PIEFVF
        DRA  G G+ V N  GEVM +++    F RD +FVE  A+ +GL+L  ++   P +IESDS  V  ++  ++    ++  L+SD  E         +  F
Subjt:  DRALSGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMSFFPMMIESDSKRVCEIMRGEMVKFSDLKTLVSDALEAW-----PIEFVF

Query:  SFREGNRLAHHLAKLAL
        + R  N +AHHL+KLAL
Subjt:  SFREGNRLAHHLAKLAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTGGGCGGCTGGTTTTGTGGAGTCGTTCAGACGGGCGAATGCGCTAGACCGAGTAGAGAGGAGGATGGGATCGGGTGATAGAGCACTCTCTGGATCGGGT
TTGTGTGTGGGTAATGGGAATGGAGAGGTAATGGTGTCGGCGGTGAGGTGTCATGAATTCGTTCGGGATTCTGACTTTGTGGAGGGTTGGGCTATGGTGGATGGG
TTGAAGTTGGCGGCTGAAATGAGTTTCTTCCCCATGATGATTGAGTCCGATTCTAAGCGTGTTTGTGAGATTATGAGGGGCGAAATGGTGAAATTTTCTGACTTG
AAAACACTGGTTTCTGATGCTCTGGAAGCTTGGCCGATTGAGTTTGTCTTCTCGTTCCGTGAAGGGAACCGTTTAGCTCATCACTTGGCGAAGTTGGCGCTGAGT
GGTTTTTTTTTATTTTGTTTGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCTGGGCGGCTGGTTTTGTGGAGTCGTTCAGACGGGCGAATGCGCTAGACCGAGTAGAGAGGAGGATGGGATCGGGTGATAGAGCACTCTCTGGATCGGGT
TTGTGTGTGGGTAATGGGAATGGAGAGGTAATGGTGTCGGCGGTGAGGTGTCATGAATTCGTTCGGGATTCTGACTTTGTGGAGGGTTGGGCTATGGTGGATGGG
TTGAAGTTGGCGGCTGAAATGAGTTTCTTCCCCATGATGATTGAGTCCGATTCTAAGCGTGTTTGTGAGATTATGAGGGGCGAAATGGTGAAATTTTCTGACTTG
AAAACACTGGTTTCTGATGCTCTGGAAGCTTGGCCGATTGAGTTTGTCTTCTCGTTCCGTGAAGGGAACCGTTTAGCTCATCACTTGGCGAAGTTGGCGCTGAGT
GGTTTTTTTTTATTTTGTTTGGATTGA
Protein sequenceShow/hide protein sequence
MVWAAGFVESFRRANALDRVERRMGSGDRALSGSGLCVGNGNGEVMVSAVRCHEFVRDSDFVEGWAMVDGLKLAAEMSFFPMMIESDSKRVCEIMRGEMVKFSDL
KTLVSDALEAWPIEFVFSFREGNRLAHHLAKLALSGFFLFCLD