; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy02g017560 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy02g017560
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionzinc finger HIT domain-containing protein 3
Genome locationChr02:44720934..44725582
RNA-Seq ExpressionLcy02g017560
SyntenyLcy02g017560
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000492 - box C/D snoRNP assembly (biological process)
GO:0048254 - snoRNA localization (biological process)
GO:0005634 - nucleus (cellular component)
GO:0070761 - pre-snoRNP complex (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007529 - Zinc finger, HIT-type
IPR040197 - Zinc finger HIT domain-containing protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146755.1 zinc finger HIT domain-containing protein 3 isoform X5 [Cucumis sativus]1.2e-5584.73Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYV
        M PR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC +KPVS GDQSTA NG  VDRPICVGDQNEVLEKSQLEAIASSSEIHN LNDE L+K I  
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYV

Query:  IDSSPDPETELDKAMEDEAFRIFSSKVLLLV
        IDSSPDPETE+DKAMEDEAFRIFSSK+  ++
Subjt:  IDSSPDPETELDKAMEDEAFRIFSSKVLLLV

XP_008464779.1 PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Cucumis melo]1.2e-5585.5Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYV
        M PR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC +KPVS  DQSTAPNG  VDRPICVGDQNEVLEKSQLEAIASSSEIHN LNDE LRK I  
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYV

Query:  IDSSPDPETELDKAMEDEAFRIFSSKVLLLV
        IDSS DPETELDKAMEDEAFRIFSSK+  ++
Subjt:  IDSSPDPETELDKAMEDEAFRIFSSKVLLLV

XP_022157884.1 zinc finger HIT domain-containing protein 3 isoform X1 [Momordica charantia]3.4e-5888.46Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVI
        MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNG LVDRPICV DQ+EVLEKSQLEAIASSSEI N LNDESL+KLI  I
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVI

Query:  DSSPDPETELDKAMEDEAFRIFSSKVLLLV
         SSPDPETELD+AMEDEAFRIFSSK+  ++
Subjt:  DSSPDPETELDKAMEDEAFRIFSSKVLLLV

XP_022995777.1 zinc finger HIT domain-containing protein 3 [Cucurbita maxima]3.0e-5483.85Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKPVSA DQS APNG  VDRP+ VGDQNEVLEK+QLEAIASSSEI N LNDE LR LI  I
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVI

Query:  DSSPDPETELDKAMEDEAFRIFSSKVLLLV
        DSSPDPE ELDKAMEDEAFRI SSK+  ++
Subjt:  DSSPDPETELDKAMEDEAFRIFSSKVLLLV

XP_023533050.1 zinc finger HIT domain-containing protein 3 [Cucurbita pepo subsp. pepo]3.9e-5483.08Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKPVSA DQS APNG  VDRP+ VGDQNEVLEK+QLEAIASSSE+ N LNDE LR LI  I
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVI

Query:  DSSPDPETELDKAMEDEAFRIFSSKVLLLV
        DSSPDPE ELDKAMEDEAFRI SSK+  ++
Subjt:  DSSPDPETELDKAMEDEAFRIFSSKVLLLV

TrEMBL top hitse value%identityAlignment
A0A0A0KDK5 HIT-type domain-containing protein5.9e-5684.73Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYV
        M PR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC +KPVS GDQSTA NG  VDRPICVGDQNEVLEKSQLEAIASSSEIHN LNDE L+K I  
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYV

Query:  IDSSPDPETELDKAMEDEAFRIFSSKVLLLV
        IDSSPDPETE+DKAMEDEAFRIFSSK+  ++
Subjt:  IDSSPDPETELDKAMEDEAFRIFSSKVLLLV

A0A1S3CM88 zinc finger HIT domain-containing protein 3 isoform X15.9e-5685.5Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYV
        M PR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC +KPVS  DQSTAPNG  VDRPICVGDQNEVLEKSQLEAIASSSEIHN LNDE LRK I  
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYV

Query:  IDSSPDPETELDKAMEDEAFRIFSSKVLLLV
        IDSS DPETELDKAMEDEAFRIFSSK+  ++
Subjt:  IDSSPDPETELDKAMEDEAFRIFSSKVLLLV

A0A6J1DXU2 zinc finger HIT domain-containing protein 3 isoform X11.7e-5888.46Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVI
        MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNG LVDRPICV DQ+EVLEKSQLEAIASSSEI N LNDESL+KLI  I
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVI

Query:  DSSPDPETELDKAMEDEAFRIFSSKVLLLV
         SSPDPETELD+AMEDEAFRIFSSK+  ++
Subjt:  DSSPDPETELDKAMEDEAFRIFSSKVLLLV

A0A6J1ESW0 zinc finger HIT domain-containing protein 32.5e-5485.71Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKPVSA DQS APNG  VDRP+ VGDQNEVLEK+QLEAIASSSEI N LNDE LR LI  I
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVI

Query:  DSSPDPETELDKAMEDEAFRIFSSKV
        DSSPDPE ELDKAMEDEAFRI S K+
Subjt:  DSSPDPETELDKAMEDEAFRIFSSKV

A0A6J1JZX2 zinc finger HIT domain-containing protein 31.5e-5483.85Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKPVSA DQS APNG  VDRP+ VGDQNEVLEK+QLEAIASSSEI N LNDE LR LI  I
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVI

Query:  DSSPDPETELDKAMEDEAFRIFSSKVLLLV
        DSSPDPE ELDKAMEDEAFRI SSK+  ++
Subjt:  DSSPDPETELDKAMEDEAFRIFSSKVLLLV

SwissProt top hitse value%identityAlignment
O36031 Uncharacterized zinc-finger protein C4F10.19c2.7e-0531.96Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQST-----APNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLI
        C +CNE+  KYKCP C  PYCSL C+K H+     + V+  + +T      P  P    P  +     +   ++ EA+ S S + + + D S++ LI
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQST-----APNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLI

Q15649 Zinc finger HIT domain-containing protein 33.7e-0727.97Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV--PCVKPVSAGDQSTAPN---GPLVDRP--------ICVGDQNEVLEKSQLEAIASSSEIHNALNDES
        C +C E P KY+CP C  PYCS+VCF+KHKE   P  +PV    +S  P     P+ ++         +   ++ + +    L+ +  S+ + + L +  
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV--PCVKPVSAGDQSTAPN---GPLVDRP--------ICVGDQNEVLEKSQLEAIASSSEIHNALNDES

Query:  LRKLIYVIDSSPDPETELDKAMEDEAFRIFSSKVLLLVKVLSN
        LR+L+  +D   D    +   M++  F  F+   L +V+   N
Subjt:  LRKLIYVIDSSPDPETELDKAMEDEAFRIFSSKVLLLVKVLSN

Q2KIH1 Zinc finger HIT domain-containing protein 32.1e-0559.46Show/hide
Query:  GPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVP
        G   C VC E P KY+CP C  PYCSL CF+KHK  P
Subjt:  GPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVP

Q6UIM1 Zinc finger HIT domain-containing protein 3 (Fragment)1.1e-0627.27Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV--PCVKPVSAGDQSTAPN---GPLVDRP--------ICVGDQNEVLEKSQLEAIASSSEIHNALNDES
        C +C E P KY+CP C  PYCS+ CF+KHKE   P  +PV    +S  P     P+ ++         +   ++ + +    L+ +  S+ + + L +  
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV--PCVKPVSAGDQSTAPN---GPLVDRP--------ICVGDQNEVLEKSQLEAIASSSEIHNALNDES

Query:  LRKLIYVIDSSPDPETELDKAMEDEAFRIFSSKVLLLVKVLSN
        LR+L+  +D   D    +   M++  F  F+   L +V+   N
Subjt:  LRKLIYVIDSSPDPETELDKAMEDEAFRIFSSKVLLLVKVLSN

Q9CQK1 Zinc finger HIT domain-containing protein 32.7e-0527.21Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV------PCVK----PVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRK
        C VC E P KY+CP C  PYCS+ CF+KHKE       P  K    P    ++S   +  + D  +   ++ + +    L+ +  S  + + L +  LR+
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV------PCVK----PVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRK

Query:  LIYVIDSSPDPETELDKAMEDEAFRIFSSKVLLLVK
        L+  +D   +    +   M++  F  F+   L +V+
Subjt:  LIYVIDSSPDPETELDKAMEDEAFRIFSSKVLLLVK

Arabidopsis top hitse value%identityAlignment
AT4G28820.1 HIT-type Zinc finger family protein1.8e-2846.45Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKP-----------------------------VSAGDQSTAPNGPL----VDRPICVGDQNEVLEK
        C++C +  SKYKCP CL PYCSL CFK HKE PC KP                             V    Q  +   P     V RPI V ++  +LEK
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKP-----------------------------VSAGDQSTAPNGPL----VDRPICVGDQNEVLEK

Query:  SQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSKVL
        +Q EAIASSSEI  AL DE L+KLIY IDSS +P  ELD+AM  EAFR F+ K+L
Subjt:  SQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSKVL

AT4G28820.2 HIT-type Zinc finger family protein2.7e-2946.1Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGPL--------------------------------VDRPICVGDQNEVLEKS
        C++C +  SKYKCP CL PYCSL CFK HKE PC KP         P  P                                 V RPI V ++  +LEK+
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGPL--------------------------------VDRPICVGDQNEVLEKS

Query:  QLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSKVL
        Q EAIASSSEI  AL DE L+KLIY IDSS +P  ELD+AM  EAFR F+ K+L
Subjt:  QLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSKVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCCTCGACAATGTCAGGTCTGCAATGAAGCACCATCCAAATACAAATGCCCCCTATGCCTTGCACCTTACTGCTCGTTGGTTTGTTTCAAGAAACACAAA
GAAGTGCCCTGTGTTAAGCCTGTGTCTGCAGGGGACCAATCAACTGCTCCTAATGGACCACTTGTAGATAGGCCAATATGTGTTGGAGACCAGAATGAAGTACTT
GAAAAGTCGCAGCTAGAGGCTATTGCTTCTTCGTCAGAAATACACAATGCTTTGAATGATGAAAGCCTCCGGAAGCTCATCTATGTCATCGATAGTTCGCCAGAT
CCAGAAACTGAACTTGATAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGCAGCAAGGTACTGTTATTGGTCAAAGTGTTGTCTAATATTTATGTTCGTTTG
ACTTATGATGCAGTTGTTACGAGCATGTCAGATAAATTGTTTCGTTTGTTTCAAGTATTTATTCTTTCTCTGTTGGTTAGATATCGTCCCTCATCTACTCCTAGC
CCTGATGGTCACAGATGGAGGAGAGAAAACTTGTTCCATGTCCCACCCCCTCACCATGGGTGCCCCACCCCCTTATCAAATTAA
mRNA sequenceShow/hide mRNA sequence
CGTCTCTCAACCTCTCTCTCTCAAACCTTGCCATCTCTTTCCCTCGTCGTCTCCTTCCCTCTGCTCTCTCACCGTCTCTCCCTATCTGCTCAGTCCAGCGAGAGC
AGGCCGCCATCAACGCTGCAGGATCCGTGCCCAGCCACGCGAAGCAGTCGCAATCGAGAAAATCCATCCCTCCTCGTCACATCCAACCCCGATTTCTGACTTTTG
TTCAGTCGCCGCCGCTGCAGCTCGTCGTCGTTGTCGTCGGTTGTGGGTTGTGGTGGTTCATGGCTGCGGATTGAGGAAGTTTAGGCTAGTTAGACTCTTTTCCCA
CATTTAAATCCGAGTGTTAGGTCGGTTAAGCTGCTGTTCAGCAAAGCAAGTGCTACATTGGCGTTTGAGACTAAGAGATTCAACATTCTATGGGTCCTCGACAAT
GTCAGGTCTGCAATGAAGCACCATCCAAATACAAATGCCCCCTATGCCTTGCACCTTACTGCTCGTTGGTTTGTTTCAAGAAACACAAAGAAGTGCCCTGTGTTA
AGCCTGTGTCTGCAGGGGACCAATCAACTGCTCCTAATGGACCACTTGTAGATAGGCCAATATGTGTTGGAGACCAGAATGAAGTACTTGAAAAGTCGCAGCTAG
AGGCTATTGCTTCTTCGTCAGAAATACACAATGCTTTGAATGATGAAAGCCTCCGGAAGCTCATCTATGTCATCGATAGTTCGCCAGATCCAGAAACTGAACTTG
ATAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGCAGCAAGGTACTGTTATTGGTCAAAGTGTTGTCTAATATTTATGTTCGTTTGACTTATGATGCAGTTG
TTACGAGCATGTCAGATAAATTGTTTCGTTTGTTTCAAGTATTTATTCTTTCTCTGTTGGTTAGATATCGTCCCTCATCTACTCCTAGCCCTGATGGTCACAGAT
GGAGGAGAGAAAACTTGTTCCATGTCCCACCCCCTCACCATGGGTGCCCCACCCCCTTATCAAATTAACAAGAAAAGGGGTATGGGCTTTCGCCTTTGCCTCATA
TCTCATCTTAAATAGTTCAGGCCTTGTCTAGTTAGCAAGAAAAGGATGACTGTTGTTATGAGAAAATTTCTAGTACTACGGAGTACATACTCTCTTTGTTCACAA
TATAGTTTTGTCTTTATAAATAATTCTATAATGCTAATGGATTCTACATCATTTTTAAAATGATGCTTACGTGGCATGTAATTGAAAGAAGTATCCATACTCTCG
TGGTATCGTAAATTTTTTCATGGTTCTAAATA
Protein sequenceShow/hide protein sequence
MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPD
PETELDKAMEDEAFRIFSSKVLLLVKVLSNIYVRLTYDAVVTSMSDKLFRLFQVFILSLLVRYRPSSTPSPDGHRWRRENLFHVPPPHHGCPTPLSN