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Lcy02g017580 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy02g017580
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionzinc finger HIT domain-containing protein 3
Genome locationChr02:44730557..44733043
RNA-Seq ExpressionLcy02g017580
SyntenyLcy02g017580
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000492 - box C/D snoRNP assembly (biological process)
GO:0048254 - snoRNA localization (biological process)
GO:0005634 - nucleus (cellular component)
GO:0070761 - pre-snoRNP complex (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606334.1 Zinc finger HIT domain-containing protein 3, partial [Cucurbita argyrosperma subsp. sororia]7.7e-1282.98Show/hide
Query:  HKEVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAIDI
        HKEVPCVKPVSA DQS APNGS VDRP+ VGDQNEVLE +QLEAI+I
Subjt:  HKEVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAIDI
XP_004146755.1 zinc finger HIT domain-containing protein 3 isoform X5 [Cucumis sativus]2.9e-1184.78Show/hide
Query:  HKEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAI
        HKEVPC +KPVS GDQSTA NG+ VDRPICVGDQNEVLE SQLEAI
Subjt:  HKEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAI
XP_008464779.1 PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Cucumis melo]7.7e-1286.96Show/hide
Query:  HKEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAI
        HKEVPC +KPVS  DQSTAPNGS VDRPICVGDQNEVLE SQLEAI
Subjt:  HKEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAI
XP_022157884.1 zinc finger HIT domain-containing protein 3 isoform X1 [Momordica charantia]8.2e-1493.33Show/hide
Query:  HKEVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAI
        HKEVPCVKPVSAGDQSTAPNGSLVDRPICV DQ+EVLE SQLEAI
Subjt:  HKEVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAI
XP_031743372.1 zinc finger HIT domain-containing protein 3 isoform X2 [Cucumis sativus]2.9e-1184.78Show/hide
Query:  HKEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAI
        HKEVPC +KPVS GDQSTA NG+ VDRPICVGDQNEVLE SQLEAI
Subjt:  HKEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAI
TrEMBL top hitse value%identityAlignment
A0A0A0KDK5 HIT-type domain-containing protein1.4e-1184.78Show/hide
Query:  HKEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAI
        HKEVPC +KPVS GDQSTA NG+ VDRPICVGDQNEVLE SQLEAI
Subjt:  HKEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAI
A0A1S3CM88 zinc finger HIT domain-containing protein 3 isoform X13.7e-1286.96Show/hide
Query:  HKEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAI
        HKEVPC +KPVS  DQSTAPNGS VDRPICVGDQNEVLE SQLEAI
Subjt:  HKEVPC-VKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAI
A0A6J1DXU2 zinc finger HIT domain-containing protein 3 isoform X14.0e-1493.33Show/hide
Query:  HKEVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAI
        HKEVPCVKPVSAGDQSTAPNGSLVDRPICV DQ+EVLE SQLEAI
Subjt:  HKEVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAI
A0A6J1ESW0 zinc finger HIT domain-containing protein 31.8e-1184.44Show/hide
Query:  HKEVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAI
        HKEVPCVKPVSA DQS APNGS VDRP+ VGDQNEVLE +QLEAI
Subjt:  HKEVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAI
A0A6J1JZX2 zinc finger HIT domain-containing protein 31.8e-1184.44Show/hide
Query:  HKEVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAI
        HKEVPCVKPVSA DQS APNGS VDRP+ VGDQNEVLE +QLEAI
Subjt:  HKEVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGCTGCTCTCTGGTTTGTTTCAAGAAGCACAATGCACAAAGAAGTGCCCTGTGTTAAGCCTGTGTCTGCAGGGGACCAATCAACTGCTCCTAATGGATCA
CTTGTAGATAGGCCAATATGTGTTGGGGACCAGAATGAAGTACTTGAAATGTCGCAGCTAGAGGCTATTGATATCGTCCATCATCGACTCCTAGCCCCAATGGTC
ACAGATGGAGTAGAGAAAACTTGTTCCATGTCTTATCAATGGGGCATTCTCAACCCTTATCATGAGTGCTCAGCTCAGCAGATGCAGATTTCAACAATGGACAAC
GTTTCTTTCTCCGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGCTGCTCTCTGGTTTGTTTCAAGAAGCACAATGCACAAAGAAGTGCCCTGTGTTAAGCCTGTGTCTGCAGGGGACCAATCAACTGCTCCTAATGGATCA
CTTGTAGATAGGCCAATATGTGTTGGGGACCAGAATGAAGTACTTGAAATGTCGCAGCTAGAGGCTATTGATATCGTCCATCATCGACTCCTAGCCCCAATGGTC
ACAGATGGAGTAGAGAAAACTTGTTCCATGTCTTATCAATGGGGCATTCTCAACCCTTATCATGAGTGCTCAGCTCAGCAGATGCAGATTTCAACAATGGACAAC
GTTTCTTTCTCCGATTGA
Protein sequenceShow/hide protein sequence
MSAALWFVSRSTMHKEVPCVKPVSAGDQSTAPNGSLVDRPICVGDQNEVLEMSQLEAIDIVHHRLLAPMVTDGVEKTCSMSYQWGILNPYHECSAQQMQISTMDN
VSFSD