; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy03g001070 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy03g001070
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationChr03:3563135..3563434
RNA-Seq ExpressionLcy03g001070
SyntenyLcy03g001070
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585515.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]2.1e-4089.69Show/hide
Query:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTL
        MELGSEESSAYVLLSSIYA+LGRSDDVERVRR MKLRGVNKDPGCSWIELKSQVHVFVVGDQIHP+I NIR EL+ LSKHMKDE  ESP+DIDSMTL
Subjt:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTL

KAG7020430.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-4089.69Show/hide
Query:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTL
        MELGSEESSAYVLLSSIYA+LGRSDDVERVRR MKLRGVNKDPGCSWIELKSQVHVFVVGDQIHP+I NIR EL+ LSKHMKDE  ESP+DIDSMTL
Subjt:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTL

XP_022144247.1 pentatricopeptide repeat-containing protein At2g33680 [Momordica charantia]3.1e-4492.93Show/hide
Query:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTLYI
        MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRREL+ LSKHMKDE HESP+DIDS  LY+
Subjt:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTLYI

XP_023002247.1 pentatricopeptide repeat-containing protein At2g33680 [Cucurbita maxima]3.2e-4191.75Show/hide
Query:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTL
        MELGSEESSAYVLLSSIYAALGRSDDVERVRR MKLRGVNKDPGCSWIELKSQVHVFVVGDQIHP+I NIR EL+ LSKHMKDE  ESPDDIDSMTL
Subjt:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTL

XP_038884767.1 pentatricopeptide repeat-containing protein At2g33680 [Benincasa hispida]4.9e-4288.89Show/hide
Query:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTLYI
        MELGSEESSAYVLLSSIY ALGRSDDVERVRRVMKLRGVNK+PGCSWIELKSQVHVFVVGDQIHPQI  IR EL+ L KHMKDEC+ESP+DIDSMT YI
Subjt:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTLYI

TrEMBL top hitse value%identityAlignment
A0A1S3BCD5 pentatricopeptide repeat-containing protein At2g336802.5e-3983.84Show/hide
Query:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTLYI
        MELGS+ESSAY+LLSSIY ALGRSDDVERVRR+MKLRGVNK+PGCSWIELKSQVHVFVVGDQIHPQI  IR EL+ L  HMKDEC+ES DD +SMTLYI
Subjt:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTLYI

A0A5A7VCE6 Pentatricopeptide repeat-containing protein2.7e-3882.83Show/hide
Query:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTLYI
        MELGS+ESSAY+LLSSIY ALGRSDDVERVRR+MKLRGVNK+PGCSWIELKSQVHVFVVGDQIHPQI  IR EL+ L  HMKDEC+ES DD +SMTL I
Subjt:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTLYI

A0A6J1CT51 pentatricopeptide repeat-containing protein At2g336801.5e-4492.93Show/hide
Query:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTLYI
        MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRREL+ LSKHMKDE HESP+DIDS  LY+
Subjt:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTLYI

A0A6J1GHM1 pentatricopeptide repeat-containing protein At2g336801.9e-3987.63Show/hide
Query:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTL
        MELGSEESSAYVLLSSIYA+LGRSDDVERVRR MKLRGVNKDPGCSWIELKSQVHVFVVGDQIHP+I NIR EL+ LSKHMKDE  ESPDD DS+ L
Subjt:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTL

A0A6J1KIZ2 pentatricopeptide repeat-containing protein At2g336801.5e-4191.75Show/hide
Query:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTL
        MELGSEESSAYVLLSSIYAALGRSDDVERVRR MKLRGVNKDPGCSWIELKSQVHVFVVGDQIHP+I NIR EL+ LSKHMKDE  ESPDDIDSMTL
Subjt:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTL

SwissProt top hitse value%identityAlignment
O64766 Pentatricopeptide repeat-containing protein At2g35030, mitochondrial7.0e-1538.38Show/hide
Query:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTLYI
        +E GS+++  YVL+S+IYAA G+ ++   +R  MK +G+ K PGCSW+++  Q H+FVVGD+ HPQ   +   L  L   M+   + + D  ++  L I
Subjt:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTLYI

P0C899 Putative pentatricopeptide repeat-containing protein At3g491422.4e-1547.56Show/hide
Query:  ELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKD
        +L  E+S  YVLLS+IYA  GR ++V  +R +MK +G+ K+PG S +E+   +H F+VGD+ HPQ   I REL  L K MK+
Subjt:  ELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKD

P93005 Pentatricopeptide repeat-containing protein At2g336802.7e-1957.14Show/hide
Query:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDE
        M LGS ESS YV LS IY ALGR  DVERV + M+  GV+K+ GCSWIELK+Q HVFVVGD +HP I   +  +  +S+ M +E
Subjt:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDE

Q9SI53 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial1.4e-1546.67Show/hide
Query:  LGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTL
        L  E++  Y LLS+IYA   + D VE +R  M+ RG+ K+PGCSWIE+  Q+H F++GD  HPQI  + ++L  L
Subjt:  LGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTL

Q9SS83 Pentatricopeptide repeat-containing protein At3g09040, mitochondrial3.1e-1542.27Show/hide
Query:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTL
        +EL  + SSAYVLLS+IYA+ G  +    +R+VM+ RGV K PG SWI+++ + H+F  GD+ H +I  I   L+ L   MKD+   +PD ++  +L
Subjt:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTL

Arabidopsis top hitse value%identityAlignment
AT2G03880.1 Pentatricopeptide repeat (PPR) superfamily protein1.0e-1646.67Show/hide
Query:  LGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTL
        L  E++  Y LLS+IYA   + D VE +R  M+ RG+ K+PGCSWIE+  Q+H F++GD  HPQI  + ++L  L
Subjt:  LGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTL

AT2G33680.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.9e-2057.14Show/hide
Query:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDE
        M LGS ESS YV LS IY ALGR  DVERV + M+  GV+K+ GCSWIELK+Q HVFVVGD +HP I   +  +  +S+ M +E
Subjt:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDE

AT2G35030.1 Pentatricopeptide repeat (PPR) superfamily protein4.9e-1638.38Show/hide
Query:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTLYI
        +E GS+++  YVL+S+IYAA G+ ++   +R  MK +G+ K PGCSW+++  Q H+FVVGD+ HPQ   +   L  L   M+   + + D  ++  L I
Subjt:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTLYI

AT3G09040.1 Pentatricopeptide repeat (PPR) superfamily protein2.2e-1642.27Show/hide
Query:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTL
        +EL  + SSAYVLLS+IYA+ G  +    +R+VM+ RGV K PG SWI+++ + H+F  GD+ H +I  I   L+ L   MKD+   +PD ++  +L
Subjt:  MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTL

AT3G49142.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.7e-1647.56Show/hide
Query:  ELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKD
        +L  E+S  YVLLS+IYA  GR ++V  +R +MK +G+ K+PG S +E+   +H F+VGD+ HPQ   I REL  L K MK+
Subjt:  ELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTAGGTTCAGAAGAATCGTCGGCTTATGTGTTATTGTCTAGTATTTATGCTGCACTGGGAAGGTCTGACGATGTTGAACGAGTGAGAAGGGTGATGAAACTTCG
AGGGGTGAATAAGGATCCAGGTTGCAGTTGGATTGAATTAAAAAGTCAGGTCCACGTGTTTGTAGTTGGGGACCAGATACATCCACAGATCGCAAATATACGTAGAGAGT
TGAAAACATTGAGCAAACATATGAAAGATGAATGTCACGAGTCGCCCGATGATATAGATTCTATGACATTATACATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTAGGTTCAGAAGAATCGTCGGCTTATGTGTTATTGTCTAGTATTTATGCTGCACTGGGAAGGTCTGACGATGTTGAACGAGTGAGAAGGGTGATGAAACTTCG
AGGGGTGAATAAGGATCCAGGTTGCAGTTGGATTGAATTAAAAAGTCAGGTCCACGTGTTTGTAGTTGGGGACCAGATACATCCACAGATCGCAAATATACGTAGAGAGT
TGAAAACATTGAGCAAACATATGAAAGATGAATGTCACGAGTCGCCCGATGATATAGATTCTATGACATTATACATATGA
Protein sequenceShow/hide protein sequence
MELGSEESSAYVLLSSIYAALGRSDDVERVRRVMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPQIANIRRELKTLSKHMKDECHESPDDIDSMTLYI