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Lcy03g005990 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy03g005990
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr03:32712551..32733777
RNA-Seq ExpressionLcy03g005990
SyntenyLcy03g005990
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EAY95391.1 hypothetical protein OsI_17229 [Oryza sativa Indica Group]4.5e-0943.96Show/hide
Query:  WVPPPDNFWKLNTDASWKQNST--VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAINLILRKSE
        W  PP  + KLN D S+++N+T  +GAI R+S G +  A+  F +   SA  AE+ A  EG+RLA+      +I+ESDCAEAI LIL + +
Subjt:  WVPPPDNFWKLNTDASWKQNST--VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAINLILRKSE

KAF8665205.1 hypothetical protein HU200_054101 [Digitaria exilis]8.5e-0835.24Show/hide
Query:  HWVPPPDNFWKLNTDASWKQNS---TVGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAINLILRKSEKWGEVEA
        HW PPP  + K NTDA++   S    VGA+ RD  G    A A +     SA  AE +A+  G++LAV+ G   +I+E+DC   ++L  ++ E+  E+  
Subjt:  HWVPPPDNFWKLNTDASWKQNS---TVGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAINLILRKSEKWGEVEA

Query:  VLESI
        +L+ +
Subjt:  VLESI

PON91290.1 Ribonuclease H-like domain containing protein [Trema orientale]7.7e-0941.41Show/hide
Query:  SSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQNSTVGA-IFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDC---AEAIN
        S++   P+   E W+PPP+ + K+N+DA  ++N +VGA + R+S G I  A A+F D E    +AE  A +  +RLA+  G EN+I E DC   A AIN
Subjt:  SSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQNSTVGA-IFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDC---AEAIN

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]5.0e-0837.63Show/hide
Query:  KSRDEHWVPPPDNFWKLNTDASWKQ---NSTVGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAINLI
        K + + W+PPP N +K+N DA++     ++ VGA+ RDS G+I  A  +   ++ SA +AE +A + G++LA +    +LI+ESDC E + L+
Subjt:  KSRDEHWVPPPDNFWKLNTDASWKQ---NSTVGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAINLI

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]3.8e-0836.45Show/hide
Query:  DEHWVPPPDNFWKLNTDASWK---QNSTVGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAINLILRKSEKWGEV
        D  W  PP +F KLN DA+WK    +S   AI RD+ G ++    S  D  +  P+AE    ++G+RL   +  + +IV+SDC+ AI+L L+       V
Subjt:  DEHWVPPPDNFWKLNTDASWK---QNSTVGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAINLILRKSEKWGEV

Query:  EAVLESI
           LE I
Subjt:  EAVLESI

TrEMBL top hitse value%identityAlignment
A0A2P5F0I0 Ribonuclease H-like domain containing protein3.7e-0941.41Show/hide
Query:  SSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQNSTVGA-IFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDC---AEAIN
        S++   P+   E W+PPP+ + K+N+DA  ++N +VGA + R+S G I  A A+F D E    +AE  A +  +RLA+  G EN+I E DC   A AIN
Subjt:  SSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQNSTVGA-IFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDC---AEAIN

A0A6J1BQ49 uncharacterized protein LOC1110047862.0e-0733.91Show/hide
Query:  YLDCYRKANLKEPCPNSSSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQNST-VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCE
        Y   Y +A   +      S    P  R   W+PP D+  K+N+DA+ +  ST +G I RD  G +  A + F  +  +   AE++  +E ++LA S    
Subjt:  YLDCYRKANLKEPCPNSSSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQNST-VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCE

Query:  NLIVESDCAEAINLI
         L+VESDC EAI L+
Subjt:  NLIVESDCAEAINLI

A0A7J9MF16 Uncharacterized protein (Fragment)1.6e-0737.72Show/hide
Query:  YRKANLKEPCPNSSSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQNST-VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIV
        +R  NL EP   S+      KS + +W  PP+  +K+N DA+       VGAI RD  G + G   +F +       AEL A  EG++LA  L   +LIV
Subjt:  YRKANLKEPCPNSSSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQNST-VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIV

Query:  ESDCAEAINLILRK
        ESDCA  +N + R+
Subjt:  ESDCAEAINLILRK

A2XX31 RNase H domain-containing protein2.2e-0943.96Show/hide
Query:  WVPPPDNFWKLNTDASWKQNST--VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAINLILRKSE
        W  PP  + KLN D S+++N+T  +GAI R+S G +  A+  F +   SA  AE+ A  EG+RLA+      +I+ESDCAEAI LIL + +
Subjt:  WVPPPDNFWKLNTDASWKQNST--VGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVESDCAEAINLILRKSE

M5X9I3 RNase H domain-containing protein (Fragment)6.3e-0928.78Show/hide
Query:  SGEYLDCYRKANLKEPCPNSSSDCAV-PKSRDEHWVPPPDNFWKLNTDASWKQNS---TVGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLA
        +G++  CY     ++P       C + P++  + W PPP   +K+N D + K       VG + R++ G+  GA        + A   EL AT+EG+R A
Subjt:  SGEYLDCYRKANLKEPCPNSSSDCAV-PKSRDEHWVPPPDNFWKLNTDASWKQNS---TVGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLA

Query:  VSLGCENLIVESDCAEAINLILRKSEKWGEVEAVLESIN
        + +G    I+E D  + +N IL   E  G  + ++E +N
Subjt:  VSLGCENLIVESDCAEAINLILRKSEKWGEVEAVLESIN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTCAGGGGAGTACTTGGATTGCTATCGGAAAGCTAATTTGAAAGAGCCTTGCCCTAATTCCTCCTCCGATTGCGCAGTTCCGAAGTCAAGAGATGAGCACTGGGT
TCCTCCTCCTGATAATTTCTGGAAACTTAACACGGATGCATCCTGGAAGCAGAATTCAACCGTTGGAGCCATATTTAGGGATTCAGTCGGGCAAATTCGAGGGGCTTTAG
CTTCCTTCTATGATGTTGAGTTTTCAGCTCCAATTGCTGAGTTAAAAGCAACTGTTGAGGGTGTCCGGCTTGCTGTATCATTAGGATGCGAGAATCTCATTGTGGAGTCT
GATTGTGCAGAGGCCATTAATCTAATTTTGAGGAAATCAGAAAAATGGGGGGAGGTGGAGGCTGTCCTAGAGTCCATTAATTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTTCAGGGGAGTACTTGGATTGCTATCGGAAAGCTAATTTGAAAGAGCCTTGCCCTAATTCCTCCTCCGATTGCGCAGTTCCGAAGTCAAGAGATGAGCACTGGGT
TCCTCCTCCTGATAATTTCTGGAAACTTAACACGGATGCATCCTGGAAGCAGAATTCAACCGTTGGAGCCATATTTAGGGATTCAGTCGGGCAAATTCGAGGGGCTTTAG
CTTCCTTCTATGATGTTGAGTTTTCAGCTCCAATTGCTGAGTTAAAAGCAACTGTTGAGGGTGTCCGGCTTGCTGTATCATTAGGATGCGAGAATCTCATTGTGGAGTCT
GATTGTGCAGAGGCCATTAATCTAATTTTGAGGAAATCAGAAAAATGGGGGGAGGTGGAGGCTGTCCTAGAGTCCATTAATTCCTAG
Protein sequenceShow/hide protein sequence
MLSGEYLDCYRKANLKEPCPNSSSDCAVPKSRDEHWVPPPDNFWKLNTDASWKQNSTVGAIFRDSVGQIRGALASFYDVEFSAPIAELKATVEGVRLAVSLGCENLIVES
DCAEAINLILRKSEKWGEVEAVLESINS