CuGenDBv2

Gene ID	Lcy03g006880
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	TATA-box-binding protein
Genome location	Chr03:36069610..36077293
RNA-Seq Expression	Lcy03g006880
Synteny	Lcy03g006880
Gene Ontology terms	GO:0006352 - DNA-templated transcription, initiation (biological process) GO:0006366 - transcription by RNA polymerase II (biological process) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
InterPro domains	IPR000814 - TATA-box binding protein IPR012295 - TBP domain superfamily IPR030491 - TATA-box binding protein, conserved site IPR033710 - TATA-box binding protein, eukaryotic

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

APO15834.1 TATA-box binding protein [Sesuvium portulacastrum]

1.2e-70

100

Show/hide

Query:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
        MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
Subjt:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV

Query:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
        LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
Subjt:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ

KAG6588117.1 TATA-box-binding protein, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-70

100

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Query:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
        MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
Subjt:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV

Query:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
        LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
Subjt:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ

XP_004144066.1 TATA-box-binding protein [Cucumis sativus]

1.2e-70

100

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Query:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
        MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
Subjt:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV

Query:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
        LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
Subjt:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ

XP_024967072.1 TATA-box-binding protein-like isoform X2 [Cynara cardunculus var. scolymus]

1.2e-70

100

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Query:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
        MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
Subjt:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV

Query:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
        LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
Subjt:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ

XP_024986276.1 TATA-box-binding protein-like [Cynara cardunculus var. scolymus]

1.2e-70

100

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Query:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
        MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
Subjt:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV

Query:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
        LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
Subjt:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LWT4 Uncharacterized protein

5.8e-71

100

Show/hide

Query:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
        MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
Subjt:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV

Query:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
        LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
Subjt:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ

A0A5A7UIK5 TATA-box-binding protein isoform X2

5.8e-71

100

Show/hide

Query:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
        MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
Subjt:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV

Query:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
        LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
Subjt:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ

A0A6J1D0P6 TATA-box-binding protein

5.8e-71

100

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Query:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
        MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
Subjt:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV

Query:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
        LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
Subjt:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ

A0A6J1H9G6 TATA-box-binding protein

5.8e-71

100

Show/hide

Query:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
        MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
Subjt:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV

Query:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
        LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
Subjt:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ

A0A6J1JDU6 TATA-box-binding protein

5.8e-71

100

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Query:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
        MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
Subjt:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV

Query:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
        LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
Subjt:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ

SwissProt top hits

e value

%identity

Alignment

P26357 TATA-box-binding protein

1.3e-72

97.84

Show/hide

Query:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
        MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAY+HGAFSSYEPELFPGLIYRMKQPKIV
Subjt:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV

Query:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
        LLIFVSGKIV+TGAKVR+ETYTAFENIYPVLTEFRKNQQ
Subjt:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ

P48511 TATA-box-binding protein

1.6e-73

100

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Query:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
        MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
Subjt:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV

Query:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
        LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
Subjt:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ

P50159 TATA-box-binding protein 2

5.1e-72

98.56

Show/hide

Query:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
        MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
Subjt:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV

Query:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
        LLIFVSGKIVLTGAKVREETYTAFENIYPVL+EFRK QQ
Subjt:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ

Q42808 TATA-box-binding protein

7.9e-73

98.56

Show/hide

Query:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
        MRIR+PKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
Subjt:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV

Query:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
        LLIFVSGKIVLTGAKVR+ETYTAFENIYPVLTEFRKNQQ
Subjt:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ

Q8W0W4 TATA-binding protein 2

3.9e-72

98.56

Show/hide

Query:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
        MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
Subjt:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV

Query:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
        LLIFVSGKIVLTGAKVR+ETYTAFENIYPVLTEFRK QQ
Subjt:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G55520.1 TATA binding protein 2

2.4e-69

93.53

Show/hide

Query:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
        MRIREPKTTALIFASGKMVCTGAKSE  SKLAARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMK PKIV
Subjt:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV

Query:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
        LLIFVSGKIV+TGAK+REETYTAFENIYPVL EFRK QQ
Subjt:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ

AT1G55520.2 TATA binding protein 2

2.4e-69

93.53

Show/hide

Query:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
        MRIREPKTTALIFASGKMVCTGAKSE  SKLAARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMK PKIV
Subjt:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV

Query:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
        LLIFVSGKIV+TGAK+REETYTAFENIYPVL EFRK QQ
Subjt:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ

AT3G13445.1 TATA binding protein 1

3.5e-68

91.37

Show/hide

Query:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
        MRIREPKTTALIFASGKMVCTGAKSE  SK+AARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMK PKIV
Subjt:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV

Query:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ
        LLIFVSGKIV+TGAK+R+ETY AFENIYPVL+EFRK QQ
Subjt:  LLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ

AT3G13445.2 TATA binding protein 1

4.7e-57

93.97

Show/hide

Query:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV
        MRIREPKTTALIFASGKMVCTGAKSE  SK+AARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMK PKIV
Subjt:  MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIV

Query:  LLIFVSGKIVLTGAKV
        LLIFVSGKIV+TGAKV
Subjt:  LLIFVSGKIVLTGAKV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGAATAAGGGAGCCAAAAACCACAGCATTGATATTTGCATCTGGAAAGATGGTCTGTACTGGAGCTAAGAGTGAACAGCAATCCAAATTAGCAGCAAGAAAG
TATGCTCGAATTATCCAAAAACTTGGGTTTCCTGCCAAGTTTAAGGATTTCAAAATTCAGAATATTGTTGGCTCATGTGATGTTAAGTTCCCCATAAGGCTTGAG
GGTCTTGCATATTCACACGGTGCCTTTTCAAGTTACGAACCAGAGTTATTTCCTGGATTGATTTATCGGATGAAACAACCAAAGATTGTGCTTCTCATTTTCGTT
TCTGGAAAAATAGTTCTCACTGGGGCTAAGGTGAGAGAGGAGACATATACAGCATTTGAGAACATATATCCAGTGCTTACAGAATTCAGGAAAAACCAGCAATG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFV
SGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ

Lcy03g006880 (gene) of Sponge gourd (P93075) v1 genome