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Lcy03g007380 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy03g007380
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
Genome locationChr03:37460225..37466350
RNA-Seq ExpressionLcy03g007380
SyntenyLcy03g007380
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031677.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.5e-1756.76Show/hide
Query:  LVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY
        ++ RQ +R  + VS+HF++VL A L+L   LLK L+P+ N+CTD +W+WFENCLG LD T IKVN+SA DRP Y
Subjt:  LVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY

KAA0067183.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]7.2e-1756.76Show/hide
Query:  LVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY
        ++ R+ +R  + VS+HF+ VL AVL+L   LLK  +P+ N+CTD +W+WFENCLG LDGT IKVN+SA DRP Y
Subjt:  LVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY

TYK08565.1 retrotransposon protein [Cucumis melo var. makuwa]2.7e-1654.05Show/hide
Query:  LVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY
        ++ R+ +R  + +S+HF++VL AV++L   LLK L+P+ N CTD++WRWFENCLG LDGT IKVN+ A+DR  Y
Subjt:  LVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY

TYK26031.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.7e-1655.41Show/hide
Query:  LVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY
        ++ R+ +R  + VS+HF+ VL AVL+L   LLK  +P+ N+CTD +W+WFENCLG LDGT IKVN+SA DRP +
Subjt:  LVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY

XP_008456821.1 PREDICTED: uncharacterized protein LOC103496660 [Cucumis melo]2.5e-1756.76Show/hide
Query:  LVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY
        ++ RQ +R  + VS+HF++VL A L+L   LLK L+P+ N+CTD +W+WFENCLG LD T IKVN+SA DRP Y
Subjt:  LVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY

TrEMBL top hitse value%identityAlignment
A0A1S3C5E3 uncharacterized protein LOC1034966601.2e-1756.76Show/hide
Query:  LVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY
        ++ RQ +R  + VS+HF++VL A L+L   LLK L+P+ N+CTD +W+WFENCLG LD T IKVN+SA DRP Y
Subjt:  LVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY

A0A5A7VGH2 Putative nuclease HARBI13.5e-1756.76Show/hide
Query:  LVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY
        ++ R+ +R  + VS+HF+ VL AVL+L   LLK  +P+ N+CTD +W+WFENCLG LDGT IKVN+SA DRP Y
Subjt:  LVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY

A0A5D3BXH4 Putative nuclease HARBI11.2e-1756.76Show/hide
Query:  LVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY
        ++ RQ +R  + VS+HF++VL A L+L   LLK L+P+ N+CTD +W+WFENCLG LD T IKVN+SA DRP Y
Subjt:  LVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY

A0A5D3CAK2 Retrotransposon protein1.3e-1654.05Show/hide
Query:  LVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY
        ++ R+ +R  + +S+HF++VL AV++L   LLK L+P+ N CTD++WRWFENCLG LDGT IKVN+ A+DR  Y
Subjt:  LVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY

A0A5D3DQT0 Putative nuclease HARBI11.3e-1655.41Show/hide
Query:  LVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY
        ++ R+ +R  + VS+HF+ VL AVL+L   LLK  +P+ N+CTD +W+WFENCLG LDGT IKVN+SA DRP +
Subjt:  LVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATTAGTAGGGCGACAGATCATAAGGCCCGACAAGATTGTTTCCAAGCACTTTAGCATTGTGTTGAACGCAGTCCTTAAACTTCAAGTAGTATTGTTGAAG
ACACTGGAGCCAATTATGAACACATGCACCGATAAGAAGTGGCGATGGTTTGAGAATTGCTTGGGTACACTAGATGGAACAAACATCAAGGTGAACATAAGTGCA
GCTGATCGACCTATGTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCATTAGTAGGGCGACAGATCATAAGGCCCGACAAGATTGTTTCCAAGCACTTTAGCATTGTGTTGAACGCAGTCCTTAAACTTCAAGTAGTATTGTTGAAG
ACACTGGAGCCAATTATGAACACATGCACCGATAAGAAGTGGCGATGGTTTGAGAATTGCTTGGGTACACTAGATGGAACAAACATCAAGGTGAACATAAGTGCA
GCTGATCGACCTATGTACTAG
Protein sequenceShow/hide protein sequence
MALVGRQIIRPDKIVSKHFSIVLNAVLKLQVVLLKTLEPIMNTCTDKKWRWFENCLGTLDGTNIKVNISAADRPMY