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Lcy03g008480 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy03g008480
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr03:40673293..40681438
RNA-Seq ExpressionLcy03g008480
SyntenyLcy03g008480
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015380705.1 uncharacterized protein LOC107174377 [Citrus sinensis]2.0e-0938.89Show/hide
Query:  LAKAISKRMKSILHHIIDDCQSAFIPRRAIADNIILSHECLHYLTRLKRSKSGYAALKLYMSKTANSLKYICVIVLILWSKRPK-----VLVQQRDPLVL
        +AKAI+ R+K ILH +I   QSAFIP R I DNII+ +ECLH +   KR ++G  ALKL +SK  N ++++ +   ++    P+     V++Q+ +  VL
Subjt:  LAKAISKRMKSILHHIIDDCQSAFIPRRAIADNIILSHECLHYLTRLKRSKSGYAALKLYMSKTANSLKYICVIVLILWSKRPK-----VLVQQRDPLVL

Query:  LNRFTFND
        ++   F +
Subjt:  LNRFTFND

XP_015382982.1 uncharacterized protein LOC107175766 [Citrus sinensis]2.5e-0937.39Show/hide
Query:  IRKIVDRSFSMEISHCSRLLNTAAHRVAKTAAILPLPCASSSSSELAKAISKRMKSILHHIIDDCQSAFIPRRAIADNIILSHECLHYLTRLKRSKSGYA
        ++ I D SF + ++  S +L    H+    +   P+   +     ++K ++ RMKS+L  +I D QSAFIP RAI DNII+S E +H+L R ++ K+G A
Subjt:  IRKIVDRSFSMEISHCSRLLNTAAHRVAKTAAILPLPCASSSSSELAKAISKRMKSILHHIIDDCQSAFIPRRAIADNIILSHECLHYLTRLKRSKSGYA

Query:  ALKLYMSKTANSLKY
        ALK+ MSK  + +++
Subjt:  ALKLYMSKTANSLKY

XP_017239753.1 PREDICTED: uncharacterized protein LOC108212537 [Daucus carota subsp. sativus]5.7e-0950Show/hide
Query:  LAKAISKRMKSILHHIIDDCQSAFIPRRAIADNIILSHECLHYLTRLKRSKSGYAALKLYMSKTANSLKY
        + K ++ RMKS+LH ++ D QSAFIP R I+DNI++S+E +HYL   K  K GY ALKL MSK  + +++
Subjt:  LAKAISKRMKSILHHIIDDCQSAFIPRRAIADNIILSHECLHYLTRLKRSKSGYAALKLYMSKTANSLKY

XP_024950769.1 uncharacterized protein LOC112497220 [Citrus sinensis]5.7e-0939.81Show/hide
Query:  IRKIVDRSFSMEISHCSRLLNTAAHRVAKTAAILPLPCASSSSSELAKAISKRMKSILHHIIDDCQSAFIPRRAIADNIILSHECLHYLTRLKRSKSGYA
        ++ I D SF + ++  S +L    H+    +   P+   +     ++K ++ RMKS+L  +I D QSAFIP RAI DNII+S E +H+L R ++ K+G A
Subjt:  IRKIVDRSFSMEISHCSRLLNTAAHRVAKTAAILPLPCASSSSSELAKAISKRMKSILHHIIDDCQSAFIPRRAIADNIILSHECLHYLTRLKRSKSGYA

Query:  ALKLYMSK
        ALK+ MSK
Subjt:  ALKLYMSK

XP_027156321.1 uncharacterized protein LOC113757111 [Coffea eugenioides]5.7e-0933.33Show/hide
Query:  SDALEVVKILNGDSEDLSKTKIFTDEIRKIVDRSFSMEISHCSRLLNTAAHRVAKTAAILPLPCASSSSSELAKAISKRMKSILHHIIDDCQSAFIPRRA
        S+  ++ ++LNG    ++ T    D++ K V       ++H    L              P+   S+    +AK ++ R+K +LHH I   QSAFIPRR 
Subjt:  SDALEVVKILNGDSEDLSKTKIFTDEIRKIVDRSFSMEISHCSRLLNTAAHRVAKTAAILPLPCASSSSSELAKAISKRMKSILHHIIDDCQSAFIPRRA

Query:  IADNIILSHECLHYLTRLKRSKSGYAALKLYMSKTANSLKY
        I DNI+LSHE +HYL   +  K G+ A+KL MSK  + +++
Subjt:  IADNIILSHECLHYLTRLKRSKSGYAALKLYMSKTANSLKY

TrEMBL top hitse value%identityAlignment
A0A2I0AH41 Putative mitochondrial protein1.0e-0847.14Show/hide
Query:  LAKAISKRMKSILHHIIDDCQSAFIPRRAIADNIILSHECLHYLTRLKRSKSGYAALKLYMSKTANSLKY
        +AK ++ R+K +L  II D QSAF+P+R I+DNII+++ECLH + R +R   G+ ALKL MSK  + +++
Subjt:  LAKAISKRMKSILHHIIDDCQSAFIPRRAIADNIILSHECLHYLTRLKRSKSGYAALKLYMSKTANSLKY

A0A2I0AN33 Ribonuclease H protein1.4e-0841.98Show/hide
Query:  PLPCASSSSSELAKAISKRMKSILHHIIDDCQSAFIPRRAIADNIILSHECLHYLTRLKRSKSGYAALKLYMSKTANSLKY
        P+   + +   +AKA++ R+K +L  II D QSAF+P+R I+DNII+++ECLH + + KR  + + ALKL MSK  + +++
Subjt:  PLPCASSSSSELAKAISKRMKSILHHIIDDCQSAFIPRRAIADNIILSHECLHYLTRLKRSKSGYAALKLYMSKTANSLKY

A0A5A7PZH8 Retrotransposon protein6.1e-0944.29Show/hide
Query:  LAKAISKRMKSILHHIIDDCQSAFIPRRAIADNIILSHECLHYLTRLKRSKSGYAALKLYMSKTANSLKY
        +AK ++ R+K++LHH ID  QSAFIP R I DN+++++ECLH+L   +  K  + A+KL M+K  + L++
Subjt:  LAKAISKRMKSILHHIIDDCQSAFIPRRAIADNIILSHECLHYLTRLKRSKSGYAALKLYMSKTANSLKY

A0A6P6T223 uncharacterized protein LOC1136967821.0e-0843.21Show/hide
Query:  PLPCASSSSSELAKAISKRMKSILHHIIDDCQSAFIPRRAIADNIILSHECLHYLTRLKRSKSGYAALKLYMSKTANSLKY
        P+   ++    +AK ++ R+K +LHH I   QSAFIP R I DNI+LSHE +HYL   +  K G+ A+KL MSK  + +++
Subjt:  PLPCASSSSSELAKAISKRMKSILHHIIDDCQSAFIPRRAIADNIILSHECLHYLTRLKRSKSGYAALKLYMSKTANSLKY

A0A803QPV3 Uncharacterized protein1.4e-0842.67Show/hide
Query:  LAKAISKRMKSILHHIIDDCQSAFIPRRAIADNIILSHECLHYLTRLKRSKSGYAALKLYMSKTANSLKYICVIV
        ++K I   +K++LHH+I + QSAF+P R I DN++++ E +H L   +R   GYAALKL MSK  + +++ CV +
Subjt:  LAKAISKRMKSILHHIIDDCQSAFIPRRAIADNIILSHECLHYLTRLKRSKSGYAALKLYMSKTANSLKYICVIV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAAGAAGGTCGATGAGGGATTGGGTGGCTTGTGCGTGACTCAGACGGATCCCCCGATCTGTTTCGAAATGCTTCAAATTAACAAGAATTGGGCAATCAAG
ACCATGGAAGCGAGAGCAATTCTAGAGGGGATTAAACAAGTTCATAGTACCTGTAATCAGCAATGCATTCCCCTCAAAATAGAATCGGACGCTTTAGAAGTGGTG
AAAATTCTCAACGGCGATTCAGAAGACCTTTCGAAGACGAAGATCTTCACGGATGAAATCAGAAAAATTGTAGATCGCTCGTTTTCCATGGAAATCAGTCACTGT
AGTCGCCTTTTGAACACAGCCGCACACCGTGTTGCGAAGACAGCTGCAATCCTTCCCCTTCCATGCGCGAGTTCTTCGTCTTCTGAGTTAGCTAAGGCTATTTCG
AAAAGAATGAAGTCTATTCTTCATCATATCATTGATGATTGTCAATCTGCCTTTATTCCTCGTCGTGCAATTGCGGATAATATCATTTTGAGTCATGAATGTTTA
CACTACCTTACTCGTTTAAAACGAAGCAAATCTGGTTATGCTGCTTTAAAACTTTATATGAGTAAGACTGCAAATTCTCTTAAATATATCTGTGTTATTGTGCTG
ATATTATGGTCCAAGCGGCCCAAGGTTCTGGTCCAGCAGAGAGATCCGTTGGTCTTGCTGAACCGATTCACCTTTAACGATCTCGATTGCTTTGCCTTGCATTGC
AGTGCAAATTTACAGATTCACTTCAATTTTTACACAGAAGGAGACGTCGAATTTGCCATTCCAGAAGCGTTGAAGCTCCCCGGGATCTACATCACTTCTTTGATC
TCCAAATCTATTCCCCAATTACTGCAAACGCCTTCGGATTCCAGTCTTGGACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAAGAAGGTCGATGAGGGATTGGGTGGCTTGTGCGTGACTCAGACGGATCCCCCGATCTGTTTCGAAATGCTTCAAATTAACAAGAATTGGGCAATCAAG
ACCATGGAAGCGAGAGCAATTCTAGAGGGGATTAAACAAGTTCATAGTACCTGTAATCAGCAATGCATTCCCCTCAAAATAGAATCGGACGCTTTAGAAGTGGTG
AAAATTCTCAACGGCGATTCAGAAGACCTTTCGAAGACGAAGATCTTCACGGATGAAATCAGAAAAATTGTAGATCGCTCGTTTTCCATGGAAATCAGTCACTGT
AGTCGCCTTTTGAACACAGCCGCACACCGTGTTGCGAAGACAGCTGCAATCCTTCCCCTTCCATGCGCGAGTTCTTCGTCTTCTGAGTTAGCTAAGGCTATTTCG
AAAAGAATGAAGTCTATTCTTCATCATATCATTGATGATTGTCAATCTGCCTTTATTCCTCGTCGTGCAATTGCGGATAATATCATTTTGAGTCATGAATGTTTA
CACTACCTTACTCGTTTAAAACGAAGCAAATCTGGTTATGCTGCTTTAAAACTTTATATGAGTAAGACTGCAAATTCTCTTAAATATATCTGTGTTATTGTGCTG
ATATTATGGTCCAAGCGGCCCAAGGTTCTGGTCCAGCAGAGAGATCCGTTGGTCTTGCTGAACCGATTCACCTTTAACGATCTCGATTGCTTTGCCTTGCATTGC
AGTGCAAATTTACAGATTCACTTCAATTTTTACACAGAAGGAGACGTCGAATTTGCCATTCCAGAAGCGTTGAAGCTCCCCGGGATCTACATCACTTCTTTGATC
TCCAAATCTATTCCCCAATTACTGCAAACGCCTTCGGATTCCAGTCTTGGACATTGA
Protein sequenceShow/hide protein sequence
MPKKVDEGLGGLCVTQTDPPICFEMLQINKNWAIKTMEARAILEGIKQVHSTCNQQCIPLKIESDALEVVKILNGDSEDLSKTKIFTDEIRKIVDRSFSMEISHC
SRLLNTAAHRVAKTAAILPLPCASSSSSELAKAISKRMKSILHHIIDDCQSAFIPRRAIADNIILSHECLHYLTRLKRSKSGYAALKLYMSKTANSLKYICVIVL
ILWSKRPKVLVQQRDPLVLLNRFTFNDLDCFALHCSANLQIHFNFYTEGDVEFAIPEALKLPGIYITSLISKSIPQLLQTPSDSSLGH