CuGenDBv2

Gene ID	Lcy03g009200
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	clathrin coat assembly protein AP180
Genome location	Chr03:42087899..42088601
RNA-Seq Expression	Lcy03g009200
Synteny	Lcy03g009200
Gene Ontology terms	GO:0006900 - vesicle budding from membrane (biological process) GO:0015031 - protein transport (biological process) GO:0048268 - clathrin coat assembly (biological process) GO:0072583 - clathrin-dependent endocytosis (biological process) GO:0005794 - Golgi apparatus (cellular component) GO:0005905 - clathrin-coated pit (cellular component) GO:0030136 - clathrin-coated vesicle (cellular component) GO:0000149 - SNARE binding (molecular function) GO:0005545 - 1-phosphatidylinositol binding (molecular function) GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding (molecular function) GO:0032050 - clathrin heavy chain binding (molecular function)
InterPro domains	IPR011417 - AP180 N-terminal homology (ANTH) domain

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004140244.1 clathrin coat assembly protein AP180 [Cucumis sativus]

4.7e-13

74.55

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Query:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN
        MK  +LID+I YW K LDRA A RPT  AKGN+LVQHSLHAVVQESF LYRDIS+
Subjt:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN

XP_008449479.1 PREDICTED: clathrin coat assembly protein AP180 [Cucumis melo]

4.7e-13

74.55

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Query:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN
        MK  +LID+I YW K LDRA A RPT  AKGN+LVQHSLHAVVQESF LYRDIS+
Subjt:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN

XP_022989087.1 clathrin coat assembly protein AP180-like [Cucurbita maxima]

4.0e-12

70.91

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Query:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN
        MK  +LID+I YW K LDRA A RPT  AK N+L+QHSLHAVVQESF LYRDIS+
Subjt:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN

XP_023531390.1 clathrin coat assembly protein AP180-like [Cucurbita pepo subsp. pepo]

4.0e-12

70.91

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Query:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN
        MK  +LID+I YW K LDRA A RPT  AK N+L+QHSLHAVVQESF LYRDIS+
Subjt:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN

XP_038887470.1 clathrin coat assembly protein AP180 [Benincasa hispida]

1.0e-12

72.73

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Query:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN
        MK  +LID+I YW K LDRA A RPT  AKGN+LVQHSLHAVVQESF LYRDI++
Subjt:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KGJ5 ENTH domain-containing protein

2.3e-13

74.55

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Query:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN
        MK  +LID+I YW K LDRA A RPT  AKGN+LVQHSLHAVVQESF LYRDIS+
Subjt:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN

A0A1S3BN17 clathrin coat assembly protein AP180

2.3e-13

74.55

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Query:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN
        MK  +LID+I YW K LDRA A RPT  AKGN+LVQHSLHAVVQESF LYRDIS+
Subjt:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN

A0A5D3C685 Clathrin coat assembly protein AP180

2.3e-13

74.55

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Query:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN
        MK  +LID+I YW K LDRA A RPT  AKGN+LVQHSLHAVVQESF LYRDIS+
Subjt:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN

A0A6J1I2N8 clathrin coat assembly protein AP180-like

2.5e-12

70.91

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Query:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN
        MK  +LID+I+YW K LDRA A RPT  AKGN+LV +SLHAVVQESF LYRDIS+
Subjt:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN

A0A6J1JET6 clathrin coat assembly protein AP180-like

1.9e-12

70.91

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Query:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN
        MK  +LID+I YW K LDRA A RPT  AK N+L+QHSLHAVVQESF LYRDIS+
Subjt:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN

SwissProt top hits

e value

%identity

Alignment

Q9ZVN6 Clathrin coat assembly protein AP180

1.1e-12

65.45

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Query:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN
        MK V+L+D+I YW K LDRA A RPT  AK N+LV+ SL+AV+QESF LYRDIS+
Subjt:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN

Arabidopsis top hits

e value

%identity

Alignment

AT1G03050.1 ENTH/ANTH/VHS superfamily protein

3.3e-04

37.04

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Query:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDIS
        MK+  +  +I +  + LDR  A RPT  A+ N++V  +L+ +V+ESF +Y D++
Subjt:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDIS

AT1G05020.1 ENTH/ANTH/VHS superfamily protein

7.7e-14

65.45

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Query:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN
        MK V+L+D+I YW K LDRA A RPT  AK N+LV+ SL+AV+QESF LYRDIS+
Subjt:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN

AT2G25430.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related

1.5e-04

48.72

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Query:  KFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDI
        + LDR  ++RPT LAK ++++  +L+ VV+ESF LY DI
Subjt:  KFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDI

AT4G02650.1 ENTH/ANTH/VHS superfamily protein

1.9e-04

37.04

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Query:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDIS
        MK+  + +++ +  + LDR  A RPT  AK N++V  +++ +V+ESF LY +I+
Subjt:  MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDIS

AT4G32285.1 ENTH/ANTH/VHS superfamily protein

7.3e-04

46.15

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Query:  KFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDI
        + LDR  + RPT LAK ++++  +++ VV+ESF LY DI
Subjt:  KFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDI

Sequences

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CDS sequence

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ATGAAATCGGTGGTGTTGATTGATCAGATTTTCTACTGGCCGAAATTTCTCGACAGAGCAAATGCCATCAGACCCACCAGTCTGGCTAAAGGGAATCAACTGGTTCAACA
TTCCCTTCACGCCGTCGTTCAAGAGAGCTTCAGTTTATATAGAGATATCTCAAATCGAACCAGATCTGGAATGAAAGATTTAGGAACGCCGAGTACGCCTGAAGCCGACC
ACCACACGACACTGCGTTTCGGATCTGCAGTTCGTGAAGAAGACCACTCGAGTTTGCTCGAGTCTGTGTTTTAG

mRNA sequence

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AAAAAAATTGAAGAACGGAAACTCAGATATGGAACGAGCCTAGATCTGAGCTCATTCCAGCCCCCCCTTTTTTAAATAGCTAAACAGAGTGATTCGGAAAACTCGTCCTC
AGAAAATTCCAGTCAGTGGGATTACACCACCTTTGTTCGAACCTTCGCTCTGTATCTCGACGAGCGACTCGATTTCTTCTTGACTGGGAAGCTTTAGAAGCGATTCACGC
AACAGAAGACAGAGAGTTTTGGAACTGCATGGCGGTTCAACGAGGCGATTCGAGATATGAAATCGGTGGTGTTGATTGATCAGATTTTCTACTGGCCGAAATTTCTCGAC
AGAGCAAATGCCATCAGACCCACCAGTCTGGCTAAAGGGAATCAACTGGTTCAACATTCCCTTCACGCCGTCGTTCAAGAGAGCTTCAGTTTATATAGAGATATCTCAAA
TCGAACCAGATCTGGAATGAAAGATTTAGGAACGCCGAGTACGCCTGAAGCCGACCACCACACGACACTGCGTTTCGGATCTGCAGTTCGTGAAGAAGACCACTCGAGTT
TGCTCGAGTCTGTGTTTTAGATCTGTGTGTGCGTCGTGCCGGAGAAGAAGACCACCGTGATAGGAATTTTTTTTTTTTTTTTTAAAGAAAACAGAAAGAAAGGGAAGAAA
GGAAGAAGAAGGAGAAAGAAAAAAAGATGAAAGGAAGAGGCAG

Protein sequence

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MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISNRTRSGMKDLGTPSTPEADHHTTLRFGSAVREEDHSSLLESVF

Lcy03g009200 (gene) of Sponge gourd (P93075) v1 genome