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Lcy03g011900 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy03g011900
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr03:45900579..45901079
RNA-Seq ExpressionLcy03g011900
SyntenyLcy03g011900
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR40694.1 hypothetical protein CICLE_v10027161mg, partial [Citrus clementina]2.8e-2138.04Show/hide
Query:  WRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELGMI
        W++P   WYKVN DA+  S   RAG+G++V ++TG+VM ++  T    RD++  E  A    L+LV D+GLAPAI+E+DS  V  L+  +     E+G +
Subjt:  WRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELGMI

Query:  IGD---ALMAFPSNLQVMFDFTYREGNRAAHRLARLALARLSDEVWLETYPMCLEDVIWNDSA
        I D    L +  S+ QV   F  R  N  AH L++LAL    ++VWLE  P  +   +  D +
Subjt:  IGD---ALMAFPSNLQVMFDFTYREGNRAAHRLARLALARLSDEVWLETYPMCLEDVIWNDSA

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]4.0e-2040.62Show/hide
Query:  WRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELGMI
        W  P + ++KVN DA+F      AGL I++RD+T  V+LSA     +V DV +AE  AA + + L  + GL P  +ETDSS+VF LL+ + ED SE+G +
Subjt:  WRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELGMI

Query:  IGDALMAFPSNLQV--MFDFTYREGNRAAHRLARLALARLSDEVWLETYPMCLEDVIWND
        +  ++    S+L +   F F  REGN  AH LAR+ +   S  VW+E +   L +VI  D
Subjt:  IGDALMAFPSNLQV--MFDFTYREGNRAAHRLARLALARLSDEVWLETYPMCLEDVIWND

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]4.2e-3044.58Show/hide
Query:  MVWRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELG
        ++W  P    YK+N DASFL+    AGLGII+R+  GQVM SAT   +N++ VDMAE   AV+ L+L + +G+ P ILETDSSR+F L  +  ED+SE G
Subjt:  MVWRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELG

Query:  MIIGDALMAFPSNLQVMFDFTYREGNRAAHRLARLALARLSDEVWLETYPM---------CLEDVI
         I+  A   +  +L   F+F  REGN+AAH LAR AL      +W+E +P+         CLE+++
Subjt:  MIIGDALMAFPSNLQVMFDFTYREGNRAAHRLARLALARLSDEVWLETYPM---------CLEDVI

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]6.6e-2341.14Show/hide
Query:  MVWRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELG
        ++W+ P  G YK+N DASFL+    AGLGII+ +  GQVM +AT   +N++ VDMAE  AAV+ L+L +++G+ PA+                ED+SE G
Subjt:  MVWRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELG

Query:  MIIGDALMAFPSNLQVMFDFTYREGNRAAHRLARLALARLSDEVWLETYPM----CLE
         I+  A   +  +L   F+F  REGN+AAH LAR AL      +W+E +P+    CLE
Subjt:  MIIGDALMAFPSNLQVMFDFTYREGNRAAHRLARLALARLSDEVWLETYPM----CLE

XP_042939569.1 uncharacterized protein LOC122274612 [Carya illinoinensis]2.5e-2236.65Show/hide
Query:  WRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELGMI
        W+ P  G+ KVN+DA+ +    + G+GI++RD  G  M++    + +V D  +AE  A  K+LEL  D+ +  AI E D+  V   + RE ED+S +G +
Subjt:  WRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELGMI

Query:  IGDALMAFPSNLQVMFDFTYREGNRAAHRLARLALARLSDEVWLETYPMCLEDVIWNDSAY
        I D  + F  N      FT+RE N  AH LAR AL  L  +VW+E  P  +   + +D  Y
Subjt:  IGDALMAFPSNLQVMFDFTYREGNRAAHRLARLALARLSDEVWLETYPMCLEDVIWNDSAY

TrEMBL top hitse value%identityAlignment
A0A6J1C467 uncharacterized protein LOC1110077751.9e-2040.62Show/hide
Query:  WRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELGMI
        W  P + ++KVN DA+F      AGL I++RD+T  V+LSA     +V DV +AE  AA + + L  + GL P  +ETDSS+VF LL+ + ED SE+G +
Subjt:  WRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELGMI

Query:  IGDALMAFPSNLQV--MFDFTYREGNRAAHRLARLALARLSDEVWLETYPMCLEDVIWND
        +  ++    S+L +   F F  REGN  AH LAR+ +   S  VW+E +   L +VI  D
Subjt:  IGDALMAFPSNLQV--MFDFTYREGNRAAHRLARLALARLSDEVWLETYPMCLEDVIWND

A0A6J1CIF1 uncharacterized protein LOC1110112372.1e-3044.58Show/hide
Query:  MVWRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELG
        ++W  P    YK+N DASFL+    AGLGII+R+  GQVM SAT   +N++ VDMAE   AV+ L+L + +G+ P ILETDSSR+F L  +  ED+SE G
Subjt:  MVWRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELG

Query:  MIIGDALMAFPSNLQVMFDFTYREGNRAAHRLARLALARLSDEVWLETYPM---------CLEDVI
         I+  A   +  +L   F+F  REGN+AAH LAR AL      +W+E +P+         CLE+++
Subjt:  MIIGDALMAFPSNLQVMFDFTYREGNRAAHRLARLALARLSDEVWLETYPM---------CLEDVI

A0A6J1DAR4 uncharacterized protein LOC1110189543.2e-2341.14Show/hide
Query:  MVWRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELG
        ++W+ P  G YK+N DASFL+    AGLGII+ +  GQVM +AT   +N++ VDMAE  AAV+ L+L +++G+ PA+                ED+SE G
Subjt:  MVWRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELG

Query:  MIIGDALMAFPSNLQVMFDFTYREGNRAAHRLARLALARLSDEVWLETYPM----CLE
         I+  A   +  +L   F+F  REGN+AAH LAR AL      +W+E +P+    CLE
Subjt:  MIIGDALMAFPSNLQVMFDFTYREGNRAAHRLARLALARLSDEVWLETYPM----CLE

A0A6J1DBJ7 uncharacterized protein LOC1110189732.5e-2037.58Show/hide
Query:  VWRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELGM
        +WR P +   KVN DA+F  +   AG+G+I+RD+TG V L+A        DVD  EG+A  + + L  + G     +ETDS R+F LL  +  D SE+G+
Subjt:  VWRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELGM

Query:  IIGDALMAFPSNLQ-VMFDFTYREGNRAAHRLARLALARLSDEVWLETYPMCLEDVI
        +     +   S+ + V F FT+R GN  AH LA+LAL     ++W+E +P  +  V+
Subjt:  IIGDALMAFPSNLQ-VMFDFTYREGNRAAHRLARLALARLSDEVWLETYPMCLEDVI

V4UMR3 RNase H domain-containing protein (Fragment)1.3e-2138.04Show/hide
Query:  WRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELGMI
        W++P   WYKVN DA+  S   RAG+G++V ++TG+VM ++  T    RD++  E  A    L+LV D+GLAPAI+E+DS  V  L+  +     E+G +
Subjt:  WRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELGMI

Query:  IGD---ALMAFPSNLQVMFDFTYREGNRAAHRLARLALARLSDEVWLETYPMCLEDVIWNDSA
        I D    L +  S+ QV   F  R  N  AH L++LAL    ++VWLE  P  +   +  D +
Subjt:  IGD---ALMAFPSNLQVMFDFTYREGNRAAHRLARLALARLSDEVWLETYPMCLEDVIWNDSA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.4e-0727.21Show/hide
Query:  WRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELGMI
        W+AP   W K N DA++  +  R G+G I+R+ +G V+          ++V  AE  A   ++  ++       I E+D+  +  LL  + +    L   
Subjt:  WRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELGMI

Query:  IGDALMAFPSNLQVMFDFTYREGNRAAHRLARLALA
        + D         +V F+FT R GN+ A R+AR +++
Subjt:  IGDALMAFPSNLQVMFDFTYREGNRAAHRLARLALA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTGGCGGGCTCCGAGGAGTGGCTGGTATAAGGTGAATTTTGATGCCTCTTTCCTGTCTGACCTGTCTAGGGCCGGCCTAGGGATAATTGTGCGAGATACTACGGG
TCAGGTGATGTTGTCGGCGACCTTCACTAGGGATAATGTGAGAGATGTCGACATGGCAGAAGGATATGCAGCTGTGAAAAGTCTGGAGCTGGTGACGGATATGGGTTTGG
CCCCAGCAATTCTTGAGACGGATTCGAGTAGAGTTTTTCAACTTCTTAAGCGAGAACGCGAAGATGTCTCTGAGTTGGGTATGATTATTGGGGATGCACTGATGGCTTTT
CCTTCTAATTTGCAGGTAATGTTTGATTTCACCTACCGTGAAGGGAACCGGGCGGCGCACCGATTGGCGAGGCTGGCCTTAGCCCGATTGAGTGATGAGGTATGGTTGGA
GACTTATCCTATGTGTCTGGAGGACGTGATATGGAATGATTCAGCGTACATGGAGGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTGGCGGGCTCCGAGGAGTGGCTGGTATAAGGTGAATTTTGATGCCTCTTTCCTGTCTGACCTGTCTAGGGCCGGCCTAGGGATAATTGTGCGAGATACTACGGG
TCAGGTGATGTTGTCGGCGACCTTCACTAGGGATAATGTGAGAGATGTCGACATGGCAGAAGGATATGCAGCTGTGAAAAGTCTGGAGCTGGTGACGGATATGGGTTTGG
CCCCAGCAATTCTTGAGACGGATTCGAGTAGAGTTTTTCAACTTCTTAAGCGAGAACGCGAAGATGTCTCTGAGTTGGGTATGATTATTGGGGATGCACTGATGGCTTTT
CCTTCTAATTTGCAGGTAATGTTTGATTTCACCTACCGTGAAGGGAACCGGGCGGCGCACCGATTGGCGAGGCTGGCCTTAGCCCGATTGAGTGATGAGGTATGGTTGGA
GACTTATCCTATGTGTCTGGAGGACGTGATATGGAATGATTCAGCGTACATGGAGGCATGA
Protein sequenceShow/hide protein sequence
MVWRAPRSGWYKVNFDASFLSDLSRAGLGIIVRDTTGQVMLSATFTRDNVRDVDMAEGYAAVKSLELVTDMGLAPAILETDSSRVFQLLKREREDVSELGMIIGDALMAF
PSNLQVMFDFTYREGNRAAHRLARLALARLSDEVWLETYPMCLEDVIWNDSAYMEA