CuGenDBv2

Gene ID	Lcy03g019960
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Centromere protein X
Genome location	Chr03:53323165..53324260
RNA-Seq Expression	Lcy03g019960
Synteny	Lcy03g019960
Gene Ontology terms	GO:0006281 - DNA repair (biological process) GO:0051382 - kinetochore assembly (biological process) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR018552 - Centromere protein X

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6589406.1 Protein JINGUBANG, partial [Cucurbita argyrosperma subsp. sororia]

4.6e-43

93.2

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Query:  MEESAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLL
        MEES FDPDLIHAIFKLEWSR+S EREKNESSDAMDCEVDAGTSKKSRPMSANANALKL+SKLLQ+F+SEA+QRAATIAEAEGISRIEATHLERILPQLL
Subjt:  MEESAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLL

Query:  LDF
        LDF
Subjt:  LDF

XP_022135388.1 protein MHF2 homolog [Momordica charantia]

3.9e-42

93.2

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Query:  MEESAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLL
        MEESAFD DLIHAIFKLEWSR+S ERE+NESSDAMDCEV+AGTSKKSRPMSANANALKLSSKLLQ+FISEA+QRAATIAEAEGISRIEATHLERILPQLL
Subjt:  MEESAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLL

Query:  LDF
        LDF
Subjt:  LDF

XP_022921828.1 protein MHF2 homolog [Cucurbita moschata]

4.6e-43

93.2

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Query:  MEESAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLL
        MEES FDPDLIHAIFKLEWSR+S EREKNESSDAMDCEVDAGTSKKSRPMSANANALKL+SKLLQ+F+SEA+QRAATIAEAEGISRIEATHLERILPQLL
Subjt:  MEESAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLL

Query:  LDF
        LDF
Subjt:  LDF

XP_022987126.1 protein MHF2 homolog [Cucurbita maxima]

4.6e-43

93.2

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Query:  MEESAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLL
        MEES FDPDLIHAIFKLEW+R+S EREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQ+F+SEA+QRAATIAEAEGISRIEATHLERILPQLL
Subjt:  MEESAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLL

Query:  LDF
        LDF
Subjt:  LDF

XP_023516676.1 protein MHF2 homolog [Cucurbita pepo subsp. pepo]

2.1e-43

94.17

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Query:  MEESAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLL
        MEES FDPDLIHAIFKLEWSR+S EREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQ+F+SEA+QRAATIAEAEGISRIEATHLERILPQLL
Subjt:  MEESAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLL

Query:  LDF
        LDF
Subjt:  LDF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LU58 Uncharacterized protein

4.8e-38

85.85

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Query:  MEESAFDPDLIHAIFKLEWSRKSNEREKNESS-DAMDCEVD--AGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILP
        MEE+ F PDLIHAIFKLEWSR+S EREKNE++ DAMDCEVD  AGTSKKSRPMSANANALKLSSKL+Q+FISEA+QRAATIAEAEGISRIE THLER+LP
Subjt:  MEESAFDPDLIHAIFKLEWSRKSNEREKNESS-DAMDCEVD--AGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILP

Query:  QLLLDF
        QLLLDF
Subjt:  QLLLDF

A0A1S3CLK5 centromere protein X isoform X2

9.7e-39

85.71

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Query:  MEESAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVD--AGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQ
        MEE+ F PDLIHAIFKLEWSR+S EREKNE+ DAMDCEVD  AGTSKKSRPMSANANALKLSSKL+Q+FISEA+QRAATIAEAEGI RIE THLER+LPQ
Subjt:  MEESAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVD--AGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQ

Query:  LLLDF
        LLLDF
Subjt:  LLLDF

A0A6J1C4N9 protein MHF2 homolog

1.9e-42

93.2

Show/hide

Query:  MEESAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLL
        MEESAFD DLIHAIFKLEWSR+S ERE+NESSDAMDCEV+AGTSKKSRPMSANANALKLSSKLLQ+FISEA+QRAATIAEAEGISRIEATHLERILPQLL
Subjt:  MEESAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLL

Query:  LDF
        LDF
Subjt:  LDF

A0A6J1E4X1 protein MHF2 homolog

2.2e-43

93.2

Show/hide

Query:  MEESAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLL
        MEES FDPDLIHAIFKLEWSR+S EREKNESSDAMDCEVDAGTSKKSRPMSANANALKL+SKLLQ+F+SEA+QRAATIAEAEGISRIEATHLERILPQLL
Subjt:  MEESAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLL

Query:  LDF
        LDF
Subjt:  LDF

A0A6J1JD93 protein MHF2 homolog

2.2e-43

93.2

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Query:  MEESAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLL
        MEES FDPDLIHAIFKLEW+R+S EREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQ+F+SEA+QRAATIAEAEGISRIEATHLERILPQLL
Subjt:  MEESAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLL

Query:  LDF
        LDF
Subjt:  LDF

SwissProt top hits

e value

%identity

Alignment

P0DJH7 Centromere protein X

2.8e-06

49.02

Show/hide

Query:  NANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLLLDF
        N +AL L ++LL++F+ EA  RAA  A+AE + +++  H+E++LPQLLLDF
Subjt:  NANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLLLDF

Q2NKU0 Centromere protein X

3.0e-05

41.38

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Query:  KSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLLLDF
        K +    + +AL+L ++LL++F+ EA  R+   A+AEG++ ++   LE++LPQLLLDF
Subjt:  KSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLLLDF

Q8L7N3 Protein MHF2 homolog

1.2e-28

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Query:  SAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLLLDF
        + FD DLIHAIFK  W+R+  ERE++++ DA + EV  GT+KK+R  SANANALKLS +LL+ F+SEA+QRAA IAEAEG+ +IEATHLERILPQLLLDF
Subjt:  SAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLLLDF

Arabidopsis top hits

e value

%identity

Alignment

AT1G78790.1 unknown protein

8.2e-30

Show/hide

Query:  SAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLLLDF
        + FD DLIHAIFK  W+R+  ERE++++ DA + EV  GT+KK+R  SANANALKLS +LL+ F+SEA+QRAA IAEAEG+ +IEATHLERILPQLLLDF
Subjt:  SAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLLLDF

AT1G78790.2 unknown protein

3.4e-20

Show/hide

Query:  SAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLLLDF
        + FD DLIHAIFK  W+R+  ERE++++ DA + EV  GT+KK+R                    SEA+QRAA IAEAEG+ +IEATHLERILPQLLLDF
Subjt:  SAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLLLDF

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAAGAGAGCGCATTCGATCCTGATCTGATTCACGCCATCTTCAAGCTCGAGTGGAGCAGAAAATCAAATGAGCGCGAGAAAAACGAGAGTTCTGATGCTATG
GATTGCGAGGTTGACGCTGGAACATCCAAGAAGAGCAGGCCAATGTCTGCCAATGCAAATGCACTTAAATTGAGCTCTAAACTTCTACAAATGTTTATCTCAGAG
GCCATACAGCGTGCTGCAACCATTGCTGAGGCTGAAGGTATTAGCAGAATTGAAGCCACTCATTTGGAGAGAATTCTTCCACAGTTGCTACTGGATTTTTGA

mRNA sequence

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Protein sequence

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MEESAFDPDLIHAIFKLEWSRKSNEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQMFISEAIQRAATIAEAEGISRIEATHLERILPQLLLDF

Lcy03g019960 (gene) of Sponge gourd (P93075) v1 genome