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Lcy04g001090 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy04g001090
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr04:5167510..5167974
RNA-Seq ExpressionLcy04g001090
SyntenyLcy04g001090
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_010687479.1 PREDICTED: uncharacterized protein LOC104901585 [Beta vulgaris subsp. vulgaris]7.5e-1332.68Show/hide
Query:  MNVDASVHPDSGSALGGCILHDSSGAVLLSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRLL
        +N DA++  D+   + G ++ D SG VL ++C  +     VD+AE     +G+ +A + GF   S ++E D+L+L   L     +    G ++ DI+RL+
Subjt:  MNVDASVHPDSGSALGGCILHDSSGAVLLSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRLL

Query:  HPCGSDKVLFTPRQGNKATHALASLARSYLDC-VWIEEWPREISEVLWCDTML
        H C S     T R+GN+  H LA +  S     VW+EE P EI++++  D  L
Subjt:  HPCGSDKVLFTPRQGNKATHALASLARSYLDC-VWIEEWPREISEVLWCDTML

XP_021739472.1 uncharacterized protein LOC110705848 [Chenopodium quinoa]5.7e-1333.12Show/hide
Query:  MNVDASVHPDSGSALGGCILHDSSGAVLLSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRLL
        +N DA++       LGG ++ DS G V+ + C  +   + VD+ E  AM   + +A + GF      +ETD+++L   L  +  D+   GL+  DI +L 
Subjt:  MNVDASVHPDSGSALGGCILHDSSGAVLLSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRLL

Query:  HPCGSDKVLFTPRQGNKATHALASLARSYLDC-VWIEEWPREISEVLWCDTMLS
        + C      F  R GN+  H+LA L+  ++   VW+EE+P EI EV+  D  LS
Subjt:  HPCGSDKVLFTPRQGNKATHALASLARSYLDC-VWIEEWPREISEVLWCDTMLS

XP_021764234.1 uncharacterized protein LOC110728871 [Chenopodium quinoa]8.3e-1233.8Show/hide
Query:  DSGSALG-GCILHDSSGAVLLSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRLLHPCGSDKV
        +   A+G G I+ D+ G VLLS C  L  C+ VD+AE  A    +G+AF+ G +      E+D+L+L++ L+    D    GL+++DI  L   C     
Subjt:  DSGSALG-GCILHDSSGAVLLSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRLLHPCGSDKV

Query:  LFTPRQGNKATHALASLARSYLDC-VWIEEWPREISEVLWCD
            R+GN A H LA ++++Y++  VW+EE P +++  +  D
Subjt:  LFTPRQGNKATHALASLARSYLDC-VWIEEWPREISEVLWCD

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]9.4e-1640.79Show/hide
Query:  MNVDASVHPDSGSALGGCILHDSSGAVLLSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRLL
        +NVDA+   +S  A  G I+ DS+G V L+   +L R   VD  EG+A+Y+G+ LA + GF    F +ETDSL++  +L  +  D  EVG+L   I+  L
Subjt:  MNVDASVHPDSGSALGGCILHDSSGAVLLSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRLL

Query:  HPCGSD-KVLFTPRQGNKATHALASLARS--YLDCVWIEEWPREISEVLWCD
                  FT R GN   H LA LA +  +L  +W+EEWP EIS VL  D
Subjt:  HPCGSD-KVLFTPRQGNKATHALASLARS--YLDCVWIEEWPREISEVLWCD

XP_041016296.1 uncharacterized protein LOC121258801 [Juglans microcarpa x Juglans regia]1.3e-1232.68Show/hide
Query:  MNVDASVHPDSGSALGGCILHDSSGAVLLSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRLL
        +NVD ++  D+  A  G ++ D  G V+++V    P     +  E  AM +G+  + QMG S    ++E+DSL LV+ L  E   +L +G L+ +++R+L
Subjt:  MNVDASVHPDSGSALGGCILHDSSGAVLLSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRLL

Query:  HPCGSDKVLFTPRQGNKATHALASLARSYLDC-VWIEEWPREISEVLWCDTML
        H     KV   PR GN+  H LA  A    D  +W+  +P  I++ +W D  L
Subjt:  HPCGSDKVLFTPRQGNKATHALASLARSYLDC-VWIEEWPREISEVLWCDTML

TrEMBL top hitse value%identityAlignment
A0A2N9HEU7 Uncharacterized protein2.4e-0932.89Show/hide
Query:  NVDASVHPDSGSALGGCILHDSSGAVLLSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRLLH
        N D ++  DS  A  G I+ DS+G ++ S+   +P   SV + E  A  + V  A ++G  +    +E DS Q++K ++ E       G +++DIR    
Subjt:  NVDASVHPDSGSALGGCILHDSSGAVLLSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRLLH

Query:  PCGSDKVLFTPRQGNKATHALASLARSYLDC-VWIEEWPREISEVLWCDTML
             +   T R+GNKA HALA LA+   D  VW+E  P  I +V   D +L
Subjt:  PCGSDKVLFTPRQGNKATHALASLARSYLDC-VWIEEWPREISEVLWCDTML

A0A2N9I921 Reverse transcriptase domain-containing protein2.0e-1136.84Show/hide
Query:  NVDASVHPDSGSALGGCILHDSSGAVLLSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRLLH
        N D +V  DS  A  G I+ DSSG V+ S+   +P   SV + E  A  + V  A ++G     F  E DS Q++K ++ EV      G ++DDIR    
Subjt:  NVDASVHPDSGSALGGCILHDSSGAVLLSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRLLH

Query:  PCGSDKVLFTPRQGNKATHALASLARSYLDC-VWIEEWPREISEVLWCDTML
             +   T R+GNKA HALA LA+   D  VW+E  P  I +V   D +L
Subjt:  PCGSDKVLFTPRQGNKATHALASLARSYLDC-VWIEEWPREISEVLWCDTML

A0A5B7BI33 Uncharacterized protein (Fragment)1.7e-1034.67Show/hide
Query:  MNVDASVHPDSGSALGGCILHDSSGAVLLSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRLL
        +NVD S  P S S   G ++ DS G V+      L  C S D AE  AM+ GV  A ++G      ++E+D L LV  +     D   +G + DDIRR +
Subjt:  MNVDASVHPDSGSALGGCILHDSSGAVLLSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRLL

Query:  HPCGSDKVLFTPRQGNKATHALASLARSY-LDCVWIEEWPREISEVLWCD
            S +V    R  N+  H +AS AR    + +WIE  P    +VL  D
Subjt:  HPCGSDKVLFTPRQGNKATHALASLARSY-LDCVWIEEWPREISEVLWCD

A0A6J1DBJ7 uncharacterized protein LOC1110189734.6e-1640.79Show/hide
Query:  MNVDASVHPDSGSALGGCILHDSSGAVLLSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRLL
        +NVDA+   +S  A  G I+ DS+G V L+   +L R   VD  EG+A+Y+G+ LA + GF    F +ETDSL++  +L  +  D  EVG+L   I+  L
Subjt:  MNVDASVHPDSGSALGGCILHDSSGAVLLSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRLL

Query:  HPCGSD-KVLFTPRQGNKATHALASLARS--YLDCVWIEEWPREISEVLWCD
                  FT R GN   H LA LA +  +L  +W+EEWP EIS VL  D
Subjt:  HPCGSD-KVLFTPRQGNKATHALASLARS--YLDCVWIEEWPREISEVLWCD

V4UMR3 RNase H domain-containing protein (Fragment)1.1e-0930.97Show/hide
Query:  MNVDASVHPDSGSALGGCILHDSSGAVL-LSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRL
        +NVDA+V      A  G ++ +S+G V+  S+C V+     ++  E  A++ G+ L   +G +    ++E+DS  +V +++ ++H   EVG L+ D++ +
Subjt:  MNVDASVHPDSGSALGGCILHDSSGAVL-LSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRL

Query:  LHPCGSD-KVLFTPRQGNKATHALASLAR-SYLDCVWIEEWPREISEVLWCDTML
        L    S  +V F PR  N+  H L+ LA  + ++ VW+EE P EI+  +  D  L
Subjt:  LHPCGSD-KVLFTPRQGNKATHALASLAR-SYLDCVWIEEWPREISEVLWCDTML

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGTTGATGCTTCAGTCCATCCTGACTCTGGGAGTGCCTTAGGAGGTTGCATTCTGCATGATTCCTCTGGTGCGGTCCTTTTATCGGTGTGCTTTGTGTTGCCGAG
ATGTTGGAGCGTTGATTTGGCAGAGGGATGGGCCATGTACAAAGGAGTTGGCCTTGCTTTCCAGATGGGTTTCTCGTCAGGCTCGTTCATGGTGGAGACTGATTCCTTAC
AGTTGGTGAAGATTCTTCATGGGGAGGTGCATGATGTTTTGGAAGTGGGTTTGTTGATGGATGATATTCGTCGGCTTCTCCATCCTTGTGGCAGTGATAAGGTTCTGTTT
ACACCACGCCAGGGAAACAAAGCGACGCATGCTTTAGCTAGCTTGGCCCGTTCATACTTAGATTGTGTGTGGATTGAAGAATGGCCTCGTGAAATCTCTGAGGTGTTGTG
GTGTGATACTATGTTGTCCTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGTTGATGCTTCAGTCCATCCTGACTCTGGGAGTGCCTTAGGAGGTTGCATTCTGCATGATTCCTCTGGTGCGGTCCTTTTATCGGTGTGCTTTGTGTTGCCGAG
ATGTTGGAGCGTTGATTTGGCAGAGGGATGGGCCATGTACAAAGGAGTTGGCCTTGCTTTCCAGATGGGTTTCTCGTCAGGCTCGTTCATGGTGGAGACTGATTCCTTAC
AGTTGGTGAAGATTCTTCATGGGGAGGTGCATGATGTTTTGGAAGTGGGTTTGTTGATGGATGATATTCGTCGGCTTCTCCATCCTTGTGGCAGTGATAAGGTTCTGTTT
ACACCACGCCAGGGAAACAAAGCGACGCATGCTTTAGCTAGCTTGGCCCGTTCATACTTAGATTGTGTGTGGATTGAAGAATGGCCTCGTGAAATCTCTGAGGTGTTGTG
GTGTGATACTATGTTGTCCTACTGA
Protein sequenceShow/hide protein sequence
MNVDASVHPDSGSALGGCILHDSSGAVLLSVCFVLPRCWSVDLAEGWAMYKGVGLAFQMGFSSGSFMVETDSLQLVKILHGEVHDVLEVGLLMDDIRRLLHPCGSDKVLF
TPRQGNKATHALASLARSYLDCVWIEEWPREISEVLWCDTMLSY