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Lcy04g001920 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy04g001920
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRibonuclease H
Genome locationChr04:11463059..11468642
RNA-Seq ExpressionLcy04g001920
SyntenyLcy04g001920
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022153142.1 uncharacterized protein LOC111020710 [Momordica charantia]1.8e-3849.72Show/hide
Query:  TLFVDGSSNTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKF
        T+FVDGSSN +GCGAGILL + +G RFEYAL FNF+ SNNE EYEAL AGLR+A+E+  S++ V  DS LIV Q+  EYQAK+ RM +YLSK +  L++F
Subjt:  TLFVDGSSNTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKF

Query:  EKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLSEPTVRTKEILETG-----GRDPMVE------PEDPEAEAEV
          +E+ Q+PRS+N+NA +LA LA+AY+ +L++++PVE+L  P++   +++E         DP+VE      P+DP+ + ++
Subjt:  EKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLSEPTVRTKEILETG-----GRDPMVE------PEDPEAEAEV

XP_022154103.1 uncharacterized protein LOC111021439 [Momordica charantia]2.4e-3855.21Show/hide
Query:  TLFVDGSSNTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKF
        TL+VDGSSN +GCGA +LL S D  RFEYAL FNF ASNNE EYEAL AGL++AR + V N+L+ SDSQLIV QV  E+QA+E RM++YLS+ ++ L +F
Subjt:  TLFVDGSSNTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKF

Query:  EKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLSEPTVRTKEILETGGRDPMVEPED
         K+EI+QIPR+QN NA +LA LA  Y+ +L +T+PVE+L  P++  +E ++    D   +PE+
Subjt:  EKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLSEPTVRTKEILETGGRDPMVEPED

XP_022156571.1 uncharacterized protein LOC111023448 [Momordica charantia]6.3e-3957.62Show/hide
Query:  TLFVDGSSNTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKF
        TL+VDGSSN +GCGAG+LL S D  RFEY L FNF ASNN+ EYEAL AGL++AR + V N+L+ SDSQLIV QV  E+QA+E RM++YLS+ ++ L +F
Subjt:  TLFVDGSSNTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKF

Query:  EKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLSEPTVRTKEILE
         K+EI QIPR+QN +A +LA LAA Y+ +L +T+PVE+L EP++  +E ++
Subjt:  EKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLSEPTVRTKEILE

XP_022156792.1 uncharacterized protein LOC111023626 [Momordica charantia]2.8e-3956.71Show/hide
Query:  GKVRRTCTLFVDGSSNTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKA
        G VR   TL+VDGSSN KGCGAG+LL   DG RF YAL F F+ASNNE EYEAL  GL++AR + V  LL+ SDSQLIV  V  EYQ KE RM  YL+KA
Subjt:  GKVRRTCTLFVDGSSNTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKA

Query:  KDLLSKFEKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLSEPTVRTKEILETGGRDP
        + LL++FE + I+Q+PRS+N+NA +LA LA+AY+ +L +T+PVE+L+E ++   EI+E     P
Subjt:  KDLLSKFEKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLSEPTVRTKEILETGGRDP

XP_022158579.1 uncharacterized protein LOC111025033 [Momordica charantia]2.7e-3754.6Show/hide
Query:  TLFVDGSSNTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKF
        TL+VDGSSN +GCGAG+LL S D  RFEYAL FNF ASNNEVEYEAL A L++ R + V N+L+ SDSQLIV QV  ++QA+E RM++YLS+ ++ L +F
Subjt:  TLFVDGSSNTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKF

Query:  EKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLSEPTVRTKEILETGGRDPMVEPED
         K+EI+QIP +QN NA  LA LA AY+ +L +T+PVE+L  P++  +E ++    D   +PE+
Subjt:  EKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLSEPTVRTKEILETGGRDPMVEPED

TrEMBL top hitse value%identityAlignment
A0A6J1DI47 Ribonuclease H8.9e-3949.72Show/hide
Query:  TLFVDGSSNTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKF
        T+FVDGSSN +GCGAGILL + +G RFEYAL FNF+ SNNE EYEAL AGLR+A+E+  S++ V  DS LIV Q+  EYQAK+ RM +YLSK +  L++F
Subjt:  TLFVDGSSNTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKF

Query:  EKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLSEPTVRTKEILETG-----GRDPMVE------PEDPEAEAEV
          +E+ Q+PRS+N+NA +LA LA+AY+ +L++++PVE+L  P++   +++E         DP+VE      P+DP+ + ++
Subjt:  EKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLSEPTVRTKEILETG-----GRDPMVE------PEDPEAEAEV

A0A6J1DJC7 Ribonuclease H1.2e-3855.21Show/hide
Query:  TLFVDGSSNTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKF
        TL+VDGSSN +GCGA +LL S D  RFEYAL FNF ASNNE EYEAL AGL++AR + V N+L+ SDSQLIV QV  E+QA+E RM++YLS+ ++ L +F
Subjt:  TLFVDGSSNTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKF

Query:  EKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLSEPTVRTKEILETGGRDPMVEPED
         K+EI+QIPR+QN NA +LA LA  Y+ +L +T+PVE+L  P++  +E ++    D   +PE+
Subjt:  EKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLSEPTVRTKEILETGGRDPMVEPED

A0A6J1DSX0 uncharacterized protein LOC1110236261.4e-3956.71Show/hide
Query:  GKVRRTCTLFVDGSSNTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKA
        G VR   TL+VDGSSN KGCGAG+LL   DG RF YAL F F+ASNNE EYEAL  GL++AR + V  LL+ SDSQLIV  V  EYQ KE RM  YL+KA
Subjt:  GKVRRTCTLFVDGSSNTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKA

Query:  KDLLSKFEKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLSEPTVRTKEILETGGRDP
        + LL++FE + I+Q+PRS+N+NA +LA LA+AY+ +L +T+PVE+L+E ++   EI+E     P
Subjt:  KDLLSKFEKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLSEPTVRTKEILETGGRDP

A0A6J1DVC6 Ribonuclease H6.8e-3957.62Show/hide
Query:  TLFVDGSSNTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKF
        TL+VDGSSN +GCGAG+LL S D  RFEY L FNF ASNN+ EYEAL AGL++AR + V N+L+ SDSQLIV QV  E+QA+E RM++YLS+ ++ L +F
Subjt:  TLFVDGSSNTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKF

Query:  EKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLSEPTVRTKEILE
         K+EI QIPR+QN +A +LA LAA Y+ +L +T+PVE+L EP++  +E ++
Subjt:  EKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLSEPTVRTKEILE

A0A6J1DZU0 Ribonuclease H1.3e-3754.6Show/hide
Query:  TLFVDGSSNTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKF
        TL+VDGSSN +GCGAG+LL S D  RFEYAL FNF ASNNEVEYEAL A L++ R + V N+L+ SDSQLIV QV  ++QA+E RM++YLS+ ++ L +F
Subjt:  TLFVDGSSNTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKF

Query:  EKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLSEPTVRTKEILETGGRDPMVEPED
         K+EI+QIP +QN NA  LA LA AY+ +L +T+PVE+L  P++  +E ++    D   +PE+
Subjt:  EKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLSEPTVRTKEILETGGRDPMVEPED

SwissProt top hitse value%identityAlignment
F9VN79 Ribonuclease HI6.9e-0430.77Show/hide
Query:  FNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKFEKWEIKQIPRSQNANAYSLAYLA
        F+  ++NN  EY  L   +     + +S+ +++ DSQL++KQ+  EY+ K +R+     KA +L  K     I  +PR +N  A  L+ +A
Subjt:  FNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKFEKWEIKQIPRSQNANAYSLAYLA

Q9HSF6 Ribonuclease HI2.7e-0831.67Show/hide
Query:  FVDGSS--NTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKF
        + DG+S  N      G +L S DGG          +A+NN+ EY+AL A L  A +    ++ ++ DSQL+ KQ+   +   +  +     +A++LL+ F
Subjt:  FVDGSS--NTKGCGAGILLESSDGGRFEYALSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKF

Query:  EKWEIKQIPRSQNANAYSLA
        + W I  +PR+ N  A +LA
Subjt:  EKWEIKQIPRSQNANAYSLA

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCAAATTCAGGGACTAGTGGAAGACTTCGGGTACGAGCAGAAAGTGCCAAATCTCACCAAGGCCGACCTTGATAAGGAAGCGGCCGACCCTAACCCCGGGGTTCA
GCCAAAGATCCCGCGTTTTCATGATGTCGTCAAAAGTGACCCGAGGGGGCAGCTCGCAGAAGAACTGGAGTCAAGCAAGTTAGAGGCAGCAGTCAATTTACTAAGTATAG
GAAAGGTGAGACGGACTTGCACACTCTTCGTTGATGGGTCCTCTAACACGAAGGGCTGTGGGGCAGGGATTTTGCTGGAATCCTCTGACGGGGGAAGATTTGAATATGCC
CTGAGCTTTAACTTCAAGGCCTCGAATAATGAAGTAGAGTATGAGGCGCTCTTCGCAGGATTGAGGTTAGCAAGGGAAATCAGGGTTTCAAACCTCTTAGTTCAGAGTGA
CTCGCAATTAATCGTGAAGCAAGTGATGACAGAATATCAGGCTAAGGAGCAGAGAATGAGCGAATACTTGTCCAAAGCCAAGGATCTCCTGTCTAAATTTGAGAAATGGG
AGATCAAGCAAATACCAAGATCCCAGAATGCCAATGCATATTCACTAGCCTATTTGGCGGCTGCTTACAAAATGGAGCTGAGCAAGACAATTCCAGTTGAAGTTTTGTCT
GAGCCCACAGTGCGCACTAAGGAAATTCTTGAAACGGGTGGTCGAGATCCCATGGTCGAGCCCGAGGATCCAGAAGCCGAGGCTGAGGTTCCCACGACTGGGGGGGATGC
CCCGATACTTGAAGTTGAACCCTCCCCGACATACTTATGCTTATGTCGACGAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGCAAATTCAGGGACTAGTGGAAGACTTCGGGTACGAGCAGAAAGTGCCAAATCTCACCAAGGCCGACCTTGATAAGGAAGCGGCCGACCCTAACCCCGGGGTTCA
GCCAAAGATCCCGCGTTTTCATGATGTCGTCAAAAGTGACCCGAGGGGGCAGCTCGCAGAAGAACTGGAGTCAAGCAAGTTAGAGGCAGCAGTCAATTTACTAAGTATAG
GAAAGGTGAGACGGACTTGCACACTCTTCGTTGATGGGTCCTCTAACACGAAGGGCTGTGGGGCAGGGATTTTGCTGGAATCCTCTGACGGGGGAAGATTTGAATATGCC
CTGAGCTTTAACTTCAAGGCCTCGAATAATGAAGTAGAGTATGAGGCGCTCTTCGCAGGATTGAGGTTAGCAAGGGAAATCAGGGTTTCAAACCTCTTAGTTCAGAGTGA
CTCGCAATTAATCGTGAAGCAAGTGATGACAGAATATCAGGCTAAGGAGCAGAGAATGAGCGAATACTTGTCCAAAGCCAAGGATCTCCTGTCTAAATTTGAGAAATGGG
AGATCAAGCAAATACCAAGATCCCAGAATGCCAATGCATATTCACTAGCCTATTTGGCGGCTGCTTACAAAATGGAGCTGAGCAAGACAATTCCAGTTGAAGTTTTGTCT
GAGCCCACAGTGCGCACTAAGGAAATTCTTGAAACGGGTGGTCGAGATCCCATGGTCGAGCCCGAGGATCCAGAAGCCGAGGCTGAGGTTCCCACGACTGGGGGGGATGC
CCCGATACTTGAAGTTGAACCCTCCCCGACATACTTATGCTTATGTCGACGAAAATAG
Protein sequenceShow/hide protein sequence
MVQIQGLVEDFGYEQKVPNLTKADLDKEAADPNPGVQPKIPRFHDVVKSDPRGQLAEELESSKLEAAVNLLSIGKVRRTCTLFVDGSSNTKGCGAGILLESSDGGRFEYA
LSFNFKASNNEVEYEALFAGLRLAREIRVSNLLVQSDSQLIVKQVMTEYQAKEQRMSEYLSKAKDLLSKFEKWEIKQIPRSQNANAYSLAYLAAAYKMELSKTIPVEVLS
EPTVRTKEILETGGRDPMVEPEDPEAEAEVPTTGGDAPILEVEPSPTYLCLCRRK