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Lcy04g002940 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy04g002940
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
Genome locationChr04:23244405..23244878
RNA-Seq ExpressionLcy04g002940
SyntenyLcy04g002940
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-1539.24Show/hide
Query:  AEMGSNVP---DDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATE
        A+ GSNV    +D V L  S + D  I       V+MS DE       +     N S GS RKR   +    E +        +QLK+I +WPKEKRATE
Subjt:  AEMGSNVP---DDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATE

Query:  ADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATENFFSILAPLKLEYCEYLLDKH
         + R ++V  L ++P+L ++ R KLM ILF +++A E F SI   LKLEYC  LL+ +
Subjt:  ADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATENFFSILAPLKLEYCEYLLDKH

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]3.5e-1840.65Show/hide
Query:  AEMGSNVP---DDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATE
        A++GSNVP   +  V L  S D DIP+       V+MS DE       +    +N S GS RK+   +  + E ++  +    +QLK+IA WPKEKRATE
Subjt:  AEMGSNVP---DDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATE

Query:  ADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATENFFSILAPLKLEYCEYLL
         + R +++  L ++PEL++R R KL+ ILF +++A E F SI    KLEYC  LL
Subjt:  ADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATENFFSILAPLKLEYCEYLL

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]7.4e-1639.1Show/hide
Query:  AEMGSNVP---DDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATE
        A++GSN+P   +D V L  S   D  IP      V MS DE   T   +     N S  S RK+   +  + E +R  M    +QLK+IA+W KEKRA +
Subjt:  AEMGSNVP---DDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATE

Query:  ADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATENFFSILAPLKLEYCEYLLD
         + R  +V  L ++P+L+NR R K++ ILF++++  E F SI   LKLEYC  LL+
Subjt:  ADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATENFFSILAPLKLEYCEYLLD

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]3.9e-1741.89Show/hide
Query:  SNVPDDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATEADFRDKI
        SN+ +D + L  S D D  IP      V+MS DE       +     N S  S RKR      + E +R  M    EQLK+IA+WPKEKRA E + R ++
Subjt:  SNVPDDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATEADFRDKI

Query:  VTHLMEVPELENRKRVKLMDILFNNMKATENFFSILAPLKLEYCEYLL
        V  L ++P+L ++ R KLM ILF +++A E F SI   LKLEYC  LL
Subjt:  VTHLMEVPELENRKRVKLMDILFNNMKATENFFSILAPLKLEYCEYLL

XP_038899283.1 uncharacterized protein LOC120086622 [Benincasa hispida]2.8e-1540.65Show/hide
Query:  NMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKA
        ++S+DE   TP    +  +N  RGS RK    +    +  +  M    +QLKSIAEW K++ ATE + R K+V  L ++P+L+ ++++K M+I+F N+  
Subjt:  NMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKA

Query:  TENFFSILAPLKLEYCEYLLDKH
        TE+F SI A +KLEYCE LL  H
Subjt:  TENFFSILAPLKLEYCEYLLDKH

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859531.9e-1741.89Show/hide
Query:  SNVPDDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATEADFRDKI
        SN+ +D + L  S D D  IP      V+MS DE       +     N S  S RKR      + E +R  M    EQLK+IA+WPKEKRA E + R ++
Subjt:  SNVPDDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATEADFRDKI

Query:  VTHLMEVPELENRKRVKLMDILFNNMKATENFFSILAPLKLEYCEYLL
        V  L ++P+L ++ R KLM ILF +++A E F SI   LKLEYC  LL
Subjt:  VTHLMEVPELENRKRVKLMDILFNNMKATENFFSILAPLKLEYCEYLL

A0A5A7SQU2 Putative nuclease HARBI11.7e-1840.65Show/hide
Query:  AEMGSNVP---DDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATE
        A++GSNVP   +  V L  S D DIP+       V+MS DE       +    +N S GS RK+   +  + E ++  +    +QLK+IA WPKEKRATE
Subjt:  AEMGSNVP---DDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATE

Query:  ADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATENFFSILAPLKLEYCEYLL
         + R +++  L ++PEL++R R KL+ ILF +++A E F SI    KLEYC  LL
Subjt:  ADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATENFFSILAPLKLEYCEYLL

A0A5A7U0H7 Retrotransposon protein1.9e-1741.89Show/hide
Query:  SNVPDDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATEADFRDKI
        SN+ +D + L  S D D  IP      V+MS DE       +     N S  S RKR      + E +R  M    EQLK+IA+WPKEKRA E + R ++
Subjt:  SNVPDDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATEADFRDKI

Query:  VTHLMEVPELENRKRVKLMDILFNNMKATENFFSILAPLKLEYCEYLL
        V  L ++P+L ++ R KLM ILF +++A E F SI   LKLEYC  LL
Subjt:  VTHLMEVPELENRKRVKLMDILFNNMKATENFFSILAPLKLEYCEYLL

A0A5D3BZU3 Retrotransposon protein6.1e-1639.24Show/hide
Query:  AEMGSNVP---DDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATE
        A+ GSNV    +D V L  S + D  I       V+MS DE       +     N S GS RKR   +    E +        +QLK+I +WPKEKRATE
Subjt:  AEMGSNVP---DDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATE

Query:  ADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATENFFSILAPLKLEYCEYLLDKH
         + R ++V  L ++P+L ++ R KLM ILF +++A E F SI   LKLEYC  LL+ +
Subjt:  ADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATENFFSILAPLKLEYCEYLLDKH

A0A5D3CVB7 Retrotransposon protein3.6e-1639.1Show/hide
Query:  AEMGSNVP---DDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATE
        A++GSN+P   +D V L  S   D  IP      V MS DE   T   +     N S  S RK+   +  + E +R  M    +QLK+IA+W KEKRA +
Subjt:  AEMGSNVP---DDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATE

Query:  ADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATENFFSILAPLKLEYCEYLLD
         + R  +V  L ++P+L+NR R K++ ILF++++  E F SI   LKLEYC  LL+
Subjt:  ADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATENFFSILAPLKLEYCEYLLD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAGATGGGTTCCAATGTGCCAGATGATGCAGTAAACCTCAGTGGATCCCCAGACAACGACATCCCCATCCCACCATTCACCATGCCTACTGTGAACATG
TCAGAGGATGAGCCTCGGGTGACGCCAGGCAGTCGAACTTACCCAACCGAAAATTTGTCACGTGGGAGTATGAGGAAGAGATCTAGGTCTAACATGCACAGTGCA
GAAGCTGTCAGAGAGGGAATGGCCTCTTATACAGAACAACTAAAGTCCATTGCAGAGTGGCCGAAAGAAAAACGTGCCACAGAGGCCGACTTCAGAGATAAAATT
GTAACCCACTTGATGGAGGTACCCGAACTAGAGAATCGAAAAAGGGTGAAGCTGATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAATTTCTTCTCCATT
CTGGCTCCTCTGAAGTTGGAGTATTGTGAATATCTTTTGGACAAACACAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAGATGGGTTCCAATGTGCCAGATGATGCAGTAAACCTCAGTGGATCCCCAGACAACGACATCCCCATCCCACCATTCACCATGCCTACTGTGAACATG
TCAGAGGATGAGCCTCGGGTGACGCCAGGCAGTCGAACTTACCCAACCGAAAATTTGTCACGTGGGAGTATGAGGAAGAGATCTAGGTCTAACATGCACAGTGCA
GAAGCTGTCAGAGAGGGAATGGCCTCTTATACAGAACAACTAAAGTCCATTGCAGAGTGGCCGAAAGAAAAACGTGCCACAGAGGCCGACTTCAGAGATAAAATT
GTAACCCACTTGATGGAGGTACCCGAACTAGAGAATCGAAAAAGGGTGAAGCTGATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAATTTCTTCTCCATT
CTGGCTCCTCTGAAGTTGGAGTATTGTGAATATCTTTTGGACAAACACAGTTGA
Protein sequenceShow/hide protein sequence
MAEMGSNVPDDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPGSRTYPTENLSRGSMRKRSRSNMHSAEAVREGMASYTEQLKSIAEWPKEKRATEADFRDKI
VTHLMEVPELENRKRVKLMDILFNNMKATENFFSILAPLKLEYCEYLLDKHS