CuGenDBv2

Gene ID	Lcy04g003530
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrotransposon protein
Genome location	Chr04:25372115..25372447
RNA-Seq Expression	Lcy04g003530
Synteny	Lcy04g003530
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR024752 - Myb/SANT-like domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031555.1 retrotransposon protein [Cucumis melo var. makuwa]

1.9e-31

54.13

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Query:  MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKC
        M+ +++ P+H+WTR +E  LVE L+ELV  GGW+ DNGTFRP Y A++ RM+ +K+P C++ +T+ ID ++++LKR + AI +M GP CSGFGWN+E KC
Subjt:  MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKC

Query:  IVAEKEVFN
        IVAEKE+F+
Subjt:  IVAEKEVFN

KAA0038975.1 retrotransposon protein [Cucumis melo var. makuwa]

1.9e-31

54.13

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Query:  MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKC
        M+ +++ P+H+WTR +E  LVE L+ELV  GGW+ DNGTFRP Y A++ RM+ +K+P C++ +T+ ID ++++LKR + AI +M GP CSGFGWN+E KC
Subjt:  MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKC

Query:  IVAEKEVFN
        IVAEKE+F+
Subjt:  IVAEKEVFN

KAA0040114.1 retrotransposon protein [Cucumis melo var. makuwa]

1.5e-31

55.05

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Query:  MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKC
        M+ +++ P+H+WTR DE  LVE L+ELV  GGW+ DNGTFRP Y A++ RM+ +K+P C++ +T+ ID ++++LKR + AI +M GP CSGF WN+E KC
Subjt:  MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKC

Query:  IVAEKEVFN
        IVAEKE+FN
Subjt:  IVAEKEVFN

KAA0053616.1 retrotransposon protein [Cucumis melo var. makuwa]

1.9e-31

54.13

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Query:  MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKC
        M+ +++ P+H+WTR +E  LVE L+ELV  GGW+ DNGTFRP Y A++ RM+ +K+P C++ +T+ ID ++++LKR + AI +M GP CSGFGWN+E KC
Subjt:  MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKC

Query:  IVAEKEVFN
        IVAEKE+F+
Subjt:  IVAEKEVFN

TYJ96194.1 retrotransposon protein [Cucumis melo var. makuwa]

1.9e-31

54.13

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Query:  MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKC
        M+ +++ P+H+WTR +E  LVE L+ELV  GGW+ DNGTFRP Y A++ RM+ +K+P C++ +T+ ID ++++LKR + AI +M GP CSGFGWN+E KC
Subjt:  MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKC

Query:  IVAEKEVFN
        IVAEKE+F+
Subjt:  IVAEKEVFN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T9H0 Retrotransposon protein

7.2e-32

55.05

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Query:  MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKC
        M+ +++ P+H+WTR DE  LVE L+ELV  GGW+ DNGTFRP Y A++ RM+ +K+P C++ +T+ ID ++++LKR + AI +M GP CSGF WN+E KC
Subjt:  MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKC

Query:  IVAEKEVFN
        IVAEKE+FN
Subjt:  IVAEKEVFN

A0A5A7TRV1 Retrotransposon protein

9.4e-32

54.13

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Query:  MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKC
        M+ +++ P+H+WTR +E  LVE L+ELV  GGW+ DNGTFRP Y A++ RM+ +K+P C++ +T+ ID ++++LKR + AI +M GP CSGFGWN+E KC
Subjt:  MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKC

Query:  IVAEKEVFN
        IVAEKE+F+
Subjt:  IVAEKEVFN

A0A5D3BCN9 Retrotransposon protein

9.4e-32

54.13

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Query:  MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKC
        M+ +++ P+H+WTR +E  LVE L+ELV  GGW+ DNGTFRP Y A++ RM+ +K+P C++ +T+ ID ++++LKR + AI +M GP CSGFGWN+E KC
Subjt:  MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKC

Query:  IVAEKEVFN
        IVAEKE+F+
Subjt:  IVAEKEVFN

A0A5D3CWL2 Retrotransposon protein

9.4e-32

54.13

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Query:  MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKC
        M+ +++ P+H+WTR +E  LVE L+ELV  GGW+ DNGTFRP Y A++ RM+ +K+P C++ +T+ ID ++++LKR + AI +M GP CSGFGWN+E KC
Subjt:  MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKC

Query:  IVAEKEVFN
        IVAEKE+F+
Subjt:  IVAEKEVFN

A0A5D3DCZ1 Retrotransposon protein

9.4e-32

54.13

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Query:  MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKC
        M+ +++ P+H+WTR +E  LVE L+ELV  GGW+ DNGTFRP Y A++ RM+ +K+P C++ +T+ ID ++++LKR + AI +M GP CSGFGWN+E KC
Subjt:  MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKC

Query:  IVAEKEVFN
        IVAEKE+F+
Subjt:  IVAEKEVFN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCAGGAGCAGACAAACAACCTAAACATATATGGACGAGGTTGGATGAGGCAAAATTGGTTGAAAGCCTCGTGGAGCTTGTACATGAAGGTGGGTGGCGAGGTGATAA
TGGAACGTTCAGACCCGACTACCATGCACGAGTGAAGCGTATGCTGAAACAAAAAATCCCGACATGCAGGATCGAATCAACATCTACAATTGACTCTAAGGTACGGTCAT
TGAAAAGACAGTACAGTGCGATTAATGATATGTTGGGTCCCGGATGTAGTGGATTCGGGTGGAATGAAGAGTATAAGTGCATTGTGGCGGAGAAAGAAGTCTTCAATGAG
TAG

mRNA sequence

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Protein sequence

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MAGADKQPKHIWTRLDEAKLVESLVELVHEGGWRGDNGTFRPDYHARVKRMLKQKIPTCRIESTSTIDSKVRSLKRQYSAINDMLGPGCSGFGWNEEYKCIVAEKEVFNE

Lcy04g003530 (gene) of Sponge gourd (P93075) v1 genome