; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy04g004830 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy04g004830
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
Genome locationChr04:31853442..31854175
RNA-Seq ExpressionLcy04g004830
SyntenyLcy04g004830
Gene Ontology termsNA
InterPro domainsIPR027806 - Harbinger transposase-derived nuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031556.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-6861.03Show/hide
Query:  MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN
        MVAMF+H +AHDVKNRVI+R+F RSGETVSRHFN  L AVLRLY+ L+K+P  +T++C D RWK FENCLGALDGTY+KV+V A DRP +RTRKGEIATN
Subjt:  MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN

Query:  VLGVVSPK----------------------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA
        VLGV   K                             +Q      Y+CDAGYPNA+GFLAPYRG+RYHL EWRG  N PT  +E+FNMKHSSA NVIERA
Subjt:  VLGVVSPK----------------------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA

Query:  FGALKGRWGYFGG
        FG LKGRW    G
Subjt:  FGALKGRWGYFGG

KAA0036474.1 retrotransposon protein [Cucumis melo var. makuwa]8.0e-6861.03Show/hide
Query:  MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN
        MVAMF+H  AHDVKNRVI+R+F RSGETVSRHFN  L AVLRLY+ L+K+P  +T++C D RWK FENCLGALDGTY+KV+V A DRP +RTRKGEIATN
Subjt:  MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN

Query:  VLGVVSPK----------------------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA
        VLGV   K                             +Q      Y+CDAGYPNA+GFLAPYRG+RYHL EWRG  N PT  +E+FNMKHSSA NVIERA
Subjt:  VLGVVSPK----------------------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA

Query:  FGALKGRWGYFGG
        FG LKGRW    G
Subjt:  FGALKGRWGYFGG

KAA0043157.1 retrotransposon protein [Cucumis melo var. makuwa]4.7e-6859.55Show/hide
Query:  MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN
        MVAMF+H +AHDVKNRVI+R+F RSGETVSRHFN  L AVLRLY+ L+K+P  +T++C D RWK FENCLGALDGTY+KV+V A DRP +RTRKGEIATN
Subjt:  MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN

Query:  VLGVVSPK----------------------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA
        VLGV   K                             +Q      Y+CDAGYPNA+GFLAPY+G+RYHL EWRG  N PT  +E+FNMKHSSA NVIERA
Subjt:  VLGVVSPK----------------------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA

Query:  FGALKGRWGYFGGSHTTLLE
        FG LKGRW    G     LE
Subjt:  FGALKGRWGYFGGSHTTLLE

KAA0056561.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-6861.03Show/hide
Query:  MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN
        MVAMF+H +AHDVKNRVI+R+F RSGETVSRHFN  L AVLRLY+ L+K+P  +T++C D RWK FENCLGALDGTY+KV+V A DRP +RTRKGEIATN
Subjt:  MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN

Query:  VLGVVSPK----------------------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA
        VLGV   K                             +Q      Y+CDAGYPNA+GFLAPYRG+RYHL EWRG  N PT  +E+FNMKHSSA NVIERA
Subjt:  VLGVVSPK----------------------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA

Query:  FGALKGRWGYFGG
        FG LKGRW    G
Subjt:  FGALKGRWGYFGG

XP_008455792.1 PREDICTED: putative nuclease HARBI1 [Cucumis melo]4.5e-7163.85Show/hide
Query:  MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN
        MVAMF+H +AHDVKNR+I+R+F RSGETVSRHFN  L A  RL+D LLKKP+ +T SC D RWKWFENCLGALDGTY+KV+VSA DRPRYRTRKGE+ATN
Subjt:  MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN

Query:  VLGVVSPK----------------------EMQYHAPMD------YICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA
        VLG    K                       +  H  +       Y+CDAGYPNA+GFLAPYRGERYHL+EWRG  N PTT REFFNMKHSSA NVIERA
Subjt:  VLGVVSPK----------------------EMQYHAPMD------YICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA

Query:  FGALKGRWGYFGG
        FG LKGRW    G
Subjt:  FGALKGRWGYFGG

TrEMBL top hitse value%identityAlignment
A0A1S3C1U8 putative nuclease HARBI12.2e-7163.85Show/hide
Query:  MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN
        MVAMF+H +AHDVKNR+I+R+F RSGETVSRHFN  L A  RL+D LLKKP+ +T SC D RWKWFENCLGALDGTY+KV+VSA DRPRYRTRKGE+ATN
Subjt:  MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN

Query:  VLGVVSPK----------------------EMQYHAPMD------YICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA
        VLG    K                       +  H  +       Y+CDAGYPNA+GFLAPYRGERYHL+EWRG  N PTT REFFNMKHSSA NVIERA
Subjt:  VLGVVSPK----------------------EMQYHAPMD------YICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA

Query:  FGALKGRWGYFGG
        FG LKGRW    G
Subjt:  FGALKGRWGYFGG

A0A5A7SYW1 Retrotransposon protein3.9e-6861.03Show/hide
Query:  MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN
        MVAMF+H  AHDVKNRVI+R+F RSGETVSRHFN  L AVLRLY+ L+K+P  +T++C D RWK FENCLGALDGTY+KV+V A DRP +RTRKGEIATN
Subjt:  MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN

Query:  VLGVVSPK----------------------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA
        VLGV   K                             +Q      Y+CDAGYPNA+GFLAPYRG+RYHL EWRG  N PT  +E+FNMKHSSA NVIERA
Subjt:  VLGVVSPK----------------------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA

Query:  FGALKGRWGYFGG
        FG LKGRW    G
Subjt:  FGALKGRWGYFGG

A0A5A7TMY2 Retrotransposon protein2.3e-6859.55Show/hide
Query:  MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN
        MVAMF+H +AHDVKNRVI+R+F RSGETVSRHFN  L AVLRLY+ L+K+P  +T++C D RWK FENCLGALDGTY+KV+V A DRP +RTRKGEIATN
Subjt:  MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN

Query:  VLGVVSPK----------------------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA
        VLGV   K                             +Q      Y+CDAGYPNA+GFLAPY+G+RYHL EWRG  N PT  +E+FNMKHSSA NVIERA
Subjt:  VLGVVSPK----------------------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA

Query:  FGALKGRWGYFGGSHTTLLE
        FG LKGRW    G     LE
Subjt:  FGALKGRWGYFGGSHTTLLE

A0A5A7UST8 Retrotransposon protein2.9e-6861.03Show/hide
Query:  MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN
        MVAMF+H +AHDVKNRVI+R+F RSGETVSRHFN  L AVLRLY+ L+K+P  +T++C D RWK FENCLGALDGTY+KV+V A DRP +RTRKGEIATN
Subjt:  MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN

Query:  VLGVVSPK----------------------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA
        VLGV   K                             +Q      Y+CDAGYPNA+GFLAPYRG+RYHL EWRG  N PT  +E+FNMKHSSA NVIERA
Subjt:  VLGVVSPK----------------------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA

Query:  FGALKGRWGYFGG
        FG LKGRW    G
Subjt:  FGALKGRWGYFGG

A0A5D3D7X8 Retrotransposon protein2.9e-6861.03Show/hide
Query:  MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN
        MVAMF+H +AHDVKNRVI+R+F RSGETVSRHFN  L AVLRLY+ L+K+P  +T++C D RWK FENCLGALDGTY+KV+V A DRP +RTRKGEIATN
Subjt:  MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN

Query:  VLGVVSPK----------------------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA
        VLGV   K                             +Q      Y+CDAGYPNA+GFLAPYRG+RYHL EWRG  N PT  +E+FNMKHSSA NVIERA
Subjt:  VLGVVSPK----------------------------EMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA

Query:  FGALKGRWGYFGG
        FG LKGRW    G
Subjt:  FGALKGRWGYFGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein1.5e-1628.05Show/hide
Query:  VAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRL---------YDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRT
        VAMF+    H+   R +  +F R+ ETV R F   L+A   L            L + PE +        W +F   +GA+DGT+V V V    +  Y  
Subjt:  VAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRL---------YDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRT

Query:  RKGEIATNVLGVVSPK--------------------------EMQYHAPMD---YICDAGYPNAKGFLAPYRGE-----RYHLTEWRGGGNPPTTPREFF
        R    + N++ +   K                          + ++  P     Y+ D+GYPN +G LAPYR       RYH++++  G   P    E F
Subjt:  RKGEIATNVLGVVSPK--------------------------EMQYHAPMD---YICDAGYPNAKGFLAPYRGE-----RYHLTEWRGGGNPPTTPREFF

Query:  NMKHSSAHNVIERAFGALKGR
        N  H+S  +VIER F   K +
Subjt:  NMKHSSAHNVIERAFGALKGR

AT5G28730.1 unknown protein2.1e-0526.92Show/hide
Query:  VAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLK-----KPESITASCQDGR--WKWFENCLGA----------LDGTYVKVHVSA
        VA+F+   A +   R I  +F  + ET+ R F+  L A+ RL    ++     +  +I+   QD    W +  + LG           LD  +    V  
Subjt:  VAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLK-----KPESITASCQDGR--WKWFENCLGA----------LDGTYVKVHVSA

Query:  ADRPRYRTRKGEIATNVLGVVSPKEMQYHAPMD---YICDAGYPNAKGFLAPYRGE
        A               VL      +  +H P D   Y+ D+GY N +G+LAPYR E
Subjt:  ADRPRYRTRKGEIATNVLGVVSPKEMQYHAPMD---YICDAGYPNAKGFLAPYRGE

AT5G28950.1 unknown protein3.9e-0440Show/hide
Query:  WKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATNVL
        + +F++C+GA+D T++   VS    P +R RKG+I+ N+L
Subjt:  WKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATNVL

AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.4e-1451.52Show/hide
Query:  YICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERAFGALKGRWGYF
        Y+ D G+ N   FLAP+RG RYHL E+ G    P TP E FN++H S  NVIER FG  K R+  F
Subjt:  YICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERAFGALKGRWGYF

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.5e-1928.85Show/hide
Query:  VAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRL-YDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN
        +A+F+  + H+++ R ++  F  SGET+SRHFN  L+AV+ +  D       S T    D    +F++C+G +D  ++ V V   ++  +R   G +  N
Subjt:  VAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRL-YDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATN

Query:  VLGVVS----------------------------PKEMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA
        VL   S                              ++Q      YI D  YPN  GF+APY G            N     +E FN +H   H  I R 
Subjt:  VLGVVS----------------------------PKEMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERA

Query:  FGALKGRW
        FGALK R+
Subjt:  FGALKGRW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGCGATGTTCATGCACTTCGTTGCTCACGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGTGAAACTGTTTCTCGGCACTTCAACGCG
ACTTTGAGTGCCGTACTACGATTGTACGACGTTCTACTTAAGAAACCGGAATCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGAATTGTTTA
GGTGCATTGGATGGTACGTACGTAAAGGTTCATGTTAGTGCGGCTGATCGACCAAGGTATAGGACGCGTAAGGGTGAGATTGCAACCAATGTTTTGGGCGTTGTG
TCGCCAAAAGAGATGCAATATCACGCCCCAATGGACTACATCTGTGATGCTGGGTACCCCAACGCAAAGGGTTTCTTGGCACCTTACAGAGGAGAGCGGTACCAC
TTAACCGAGTGGCGTGGGGGAGGCAATCCACCTACTACACCAAGGGAGTTCTTCAACATGAAGCATTCTTCTGCACATAATGTTATCGAGAGAGCATTCGGTGCT
CTGAAAGGACGGTGGGGATACTTCGGGGGAAGTCATACTACCCTGCTCGAACCCAGTGTCGAATCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGCGATGTTCATGCACTTCGTTGCTCACGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGTGAAACTGTTTCTCGGCACTTCAACGCG
ACTTTGAGTGCCGTACTACGATTGTACGACGTTCTACTTAAGAAACCGGAATCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGAATTGTTTA
GGTGCATTGGATGGTACGTACGTAAAGGTTCATGTTAGTGCGGCTGATCGACCAAGGTATAGGACGCGTAAGGGTGAGATTGCAACCAATGTTTTGGGCGTTGTG
TCGCCAAAAGAGATGCAATATCACGCCCCAATGGACTACATCTGTGATGCTGGGTACCCCAACGCAAAGGGTTTCTTGGCACCTTACAGAGGAGAGCGGTACCAC
TTAACCGAGTGGCGTGGGGGAGGCAATCCACCTACTACACCAAGGGAGTTCTTCAACATGAAGCATTCTTCTGCACATAATGTTATCGAGAGAGCATTCGGTGCT
CTGAAAGGACGGTGGGGATACTTCGGGGGAAGTCATACTACCCTGCTCGAACCCAGTGTCGAATCATAA
Protein sequenceShow/hide protein sequence
MVAMFMHFVAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPESITASCQDGRWKWFENCLGALDGTYVKVHVSAADRPRYRTRKGEIATNVLGVV
SPKEMQYHAPMDYICDAGYPNAKGFLAPYRGERYHLTEWRGGGNPPTTPREFFNMKHSSAHNVIERAFGALKGRWGYFGGSHTTLLEPSVES