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Lcy04g005490 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy04g005490
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationChr04:33927839..33955088
RNA-Seq ExpressionLcy04g005490
SyntenyLcy04g005490
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034014.1 uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa]8.9e-2951.16Show/hide
Query:  IDPEPKSVAPP-CDGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQRDGHTVDSTIEHDLVVAPVPVQNDLLYKGLICQDKEILQHVVKRFS
        +D EP+S APP C  E++V  N + E R ET DEFE+++FD  E+  PS  FT  D + VD+  EHD ++ P+   N  LY G+IC++KE++QH+VK F+
Subjt:  IDPEPKSVAPP-CDGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQRDGHTVDSTIEHDLVVAPVPVQNDLLYKGLICQDKEILQHVVKRFS

Query:  IKCHSPYEVVVSTPTIWAIRCIKWEDGCK
        IK H+PYEVV STPT W IRC K  +GCK
Subjt:  IKCHSPYEVVVSTPTIWAIRCIKWEDGCK

KAA0040476.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]1.5e-2851.16Show/hide
Query:  IDPEPKSVAPP-CDGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQRDGHTVDSTIEHDLVVAPVPVQNDLLYKGLICQDKEILQHVVKRFS
        +D EP+S APP C  E++V  N + E R ET DEFE+++FD  E+  PS  FT  D + VD   EHD ++ P+   N  LY G+IC++KE+LQH++K F+
Subjt:  IDPEPKSVAPP-CDGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQRDGHTVDSTIEHDLVVAPVPVQNDLLYKGLICQDKEILQHVVKRFS

Query:  IKCHSPYEVVVSTPTIWAIRCIKWEDGCK
        IK H+PYEVV STPT W IRC K  +GCK
Subjt:  IKCHSPYEVVVSTPTIWAIRCIKWEDGCK

TYJ95836.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]3.4e-2851.16Show/hide
Query:  IDPEPKSVAPP-CDGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQRDGHTVDSTIEHDLVVAPVPVQNDLLYKGLICQDKEILQHVVKRFS
        +D EP+S APP C  E++V  N + E R ET DEFE+++FD  E+  PS  FT  D + VD   EHD ++ P+   N  LY G+IC++K++LQH+VK F+
Subjt:  IDPEPKSVAPP-CDGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQRDGHTVDSTIEHDLVVAPVPVQNDLLYKGLICQDKEILQHVVKRFS

Query:  IKCHSPYEVVVSTPTIWAIRCIKWEDGCK
        IK H+PYEVV STPT W IRC K  +GCK
Subjt:  IKCHSPYEVVVSTPTIWAIRCIKWEDGCK

XP_008456454.1 PREDICTED: uncharacterized protein LOC103496397 [Cucumis melo]7.6e-2850.39Show/hide
Query:  IDPEPKSVAPP-CDGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQRDGHTVDSTIEHDLVVAPVPVQNDLLYKGLICQDKEILQHVVKRFS
        +D +P+S APP C  E++V  N + E R +T DEFE+++FD  E+  PS  FT  D   VD   EHD ++ P+ + N  LY G+IC++KE+LQH+VK F+
Subjt:  IDPEPKSVAPP-CDGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQRDGHTVDSTIEHDLVVAPVPVQNDLLYKGLICQDKEILQHVVKRFS

Query:  IKCHSPYEVVVSTPTIWAIRCIKWEDGCK
        IK H+PYEVV STPT W IRC K   GCK
Subjt:  IKCHSPYEVVVSTPTIWAIRCIKWEDGCK

XP_022143566.1 uncharacterized protein LOC111013435 [Momordica charantia]4.7e-3046Show/hide
Query:  NVENFGEIPSQCLEPSQCIDPEPKSVAPPC----DGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQRDGHTVDSTIEHDLVVAPVPVQNDL
        NV    E PSQCLE SQC+D EP+ V PP     +  D++  + F ELR  T DEF++L+ +  EH  PS  F       V+   EHD ++ P+P +ND+
Subjt:  NVENFGEIPSQCLEPSQCIDPEPKSVAPPC----DGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQRDGHTVDSTIEHDLVVAPVPVQNDL

Query:  LYKGLICQDKEILQHVVKRFSIKCHSPYEVVVSTPTIWAIRCIKWEDGCK
        LYK  +C DKE +QH+VK F+++ H PY++V S P+ W IRC KW+DGCK
Subjt:  LYKGLICQDKEILQHVVKRFSIKCHSPYEVVVSTPTIWAIRCIKWEDGCK

TrEMBL top hitse value%identityAlignment
A0A1S3C4J7 uncharacterized protein LOC1034963973.7e-2850.39Show/hide
Query:  IDPEPKSVAPP-CDGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQRDGHTVDSTIEHDLVVAPVPVQNDLLYKGLICQDKEILQHVVKRFS
        +D +P+S APP C  E++V  N + E R +T DEFE+++FD  E+  PS  FT  D   VD   EHD ++ P+ + N  LY G+IC++KE+LQH+VK F+
Subjt:  IDPEPKSVAPP-CDGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQRDGHTVDSTIEHDLVVAPVPVQNDLLYKGLICQDKEILQHVVKRFS

Query:  IKCHSPYEVVVSTPTIWAIRCIKWEDGCK
        IK H+PYEVV STPT W IRC K   GCK
Subjt:  IKCHSPYEVVVSTPTIWAIRCIKWEDGCK

A0A5A7SS31 DBD_Tnp_Mut domain-containing protein4.3e-2951.16Show/hide
Query:  IDPEPKSVAPP-CDGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQRDGHTVDSTIEHDLVVAPVPVQNDLLYKGLICQDKEILQHVVKRFS
        +D EP+S APP C  E++V  N + E R ET DEFE+++FD  E+  PS  FT  D + VD+  EHD ++ P+   N  LY G+IC++KE++QH+VK F+
Subjt:  IDPEPKSVAPP-CDGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQRDGHTVDSTIEHDLVVAPVPVQNDLLYKGLICQDKEILQHVVKRFS

Query:  IKCHSPYEVVVSTPTIWAIRCIKWEDGCK
        IK H+PYEVV STPT W IRC K  +GCK
Subjt:  IKCHSPYEVVVSTPTIWAIRCIKWEDGCK

A0A5D3BAB0 Serine/threonine-protein phosphatase 7 long form-like protein1.6e-2851.16Show/hide
Query:  IDPEPKSVAPP-CDGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQRDGHTVDSTIEHDLVVAPVPVQNDLLYKGLICQDKEILQHVVKRFS
        +D EP+S APP C  E++V  N + E R ET DEFE+++FD  E+  PS  FT  D + VD   EHD ++ P+   N  LY G+IC++K++LQH+VK F+
Subjt:  IDPEPKSVAPP-CDGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQRDGHTVDSTIEHDLVVAPVPVQNDLLYKGLICQDKEILQHVVKRFS

Query:  IKCHSPYEVVVSTPTIWAIRCIKWEDGCK
        IK H+PYEVV STPT W IRC K  +GCK
Subjt:  IKCHSPYEVVVSTPTIWAIRCIKWEDGCK

A0A5D3DIM2 Serine/threonine-protein phosphatase 7 long form-like protein7.4e-2951.16Show/hide
Query:  IDPEPKSVAPP-CDGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQRDGHTVDSTIEHDLVVAPVPVQNDLLYKGLICQDKEILQHVVKRFS
        +D EP+S APP C  E++V  N + E R ET DEFE+++FD  E+  PS  FT  D + VD   EHD ++ P+   N  LY G+IC++KE+LQH++K F+
Subjt:  IDPEPKSVAPP-CDGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQRDGHTVDSTIEHDLVVAPVPVQNDLLYKGLICQDKEILQHVVKRFS

Query:  IKCHSPYEVVVSTPTIWAIRCIKWEDGCK
        IK H+PYEVV STPT W IRC K  +GCK
Subjt:  IKCHSPYEVVVSTPTIWAIRCIKWEDGCK

A0A6J1CQN0 uncharacterized protein LOC1110134352.3e-3046Show/hide
Query:  NVENFGEIPSQCLEPSQCIDPEPKSVAPPC----DGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQRDGHTVDSTIEHDLVVAPVPVQNDL
        NV    E PSQCLE SQC+D EP+ V PP     +  D++  + F ELR  T DEF++L+ +  EH  PS  F       V+   EHD ++ P+P +ND+
Subjt:  NVENFGEIPSQCLEPSQCIDPEPKSVAPPC----DGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQRDGHTVDSTIEHDLVVAPVPVQNDL

Query:  LYKGLICQDKEILQHVVKRFSIKCHSPYEVVVSTPTIWAIRCIKWEDGCK
        LYK  +C DKE +QH+VK F+++ H PY++V S P+ W IRC KW+DGCK
Subjt:  LYKGLICQDKEILQHVVKRFSIKCHSPYEVVVSTPTIWAIRCIKWEDGCK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGATCGAACGCCCAGCTCACCGTCGTTCCACGAACCGACGCCCAGCTCGCCGCCGCTCGTTCAGTTTCGCCCAGATCGAACGCCCTCCTTCTTCAGTCGAAGAAT
AGAAGATAATGTAGAAAACTTTGGAGAAATTCCCAGCCAATGTTTGGAACCTAGCCAATGCATCGATCCTGAGCCTAAATCAGTAGCACCACCATGTGATGGTGAAGATG
TAGTTTTTTATAATACATTTAAAGAGTTAAGGATCGAAACATATGATGAATTTGAAGATTTGGAATTTGATGATCGTGAACATACCAGCCCTTCAGTAGTATTCACCCAA
CGAGATGGTCACACGGTAGATAGCACTATAGAACACGACCTAGTTGTAGCACCAGTGCCAGTTCAAAATGATCTGTTGTACAAGGGTTTGATTTGTCAAGACAAAGAGAT
TCTTCAACATGTGGTGAAACGTTTTTCTATTAAGTGTCACTCACCTTATGAAGTTGTCGTGTCAACGCCGACGATTTGGGCAATAAGATGTATAAAGTGGGAAGATGGTT
GCAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAGATCGAACGCCCAGCTCACCGTCGTTCCACGAACCGACGCCCAGCTCGCCGCCGCTCGTTCAGTTTCGCCCAGATCGAACGCCCTCCTTCTTCAGTCGAAGAAT
AGAAGATAATGTAGAAAACTTTGGAGAAATTCCCAGCCAATGTTTGGAACCTAGCCAATGCATCGATCCTGAGCCTAAATCAGTAGCACCACCATGTGATGGTGAAGATG
TAGTTTTTTATAATACATTTAAAGAGTTAAGGATCGAAACATATGATGAATTTGAAGATTTGGAATTTGATGATCGTGAACATACCAGCCCTTCAGTAGTATTCACCCAA
CGAGATGGTCACACGGTAGATAGCACTATAGAACACGACCTAGTTGTAGCACCAGTGCCAGTTCAAAATGATCTGTTGTACAAGGGTTTGATTTGTCAAGACAAAGAGAT
TCTTCAACATGTGGTGAAACGTTTTTCTATTAAGTGTCACTCACCTTATGAAGTTGTCGTGTCAACGCCGACGATTTGGGCAATAAGATGTATAAAGTGGGAAGATGGTT
GCAAATGA
Protein sequenceShow/hide protein sequence
MPDRTPSSPSFHEPTPSSPPLVQFRPDRTPSFFSRRIEDNVENFGEIPSQCLEPSQCIDPEPKSVAPPCDGEDVVFYNTFKELRIETYDEFEDLEFDDREHTSPSVVFTQ
RDGHTVDSTIEHDLVVAPVPVQNDLLYKGLICQDKEILQHVVKRFSIKCHSPYEVVVSTPTIWAIRCIKWEDGCK