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Lcy04g006100 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy04g006100
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionTranscription factor ORG2
Genome locationChr04:35353357..35354653
RNA-Seq ExpressionLcy04g006100
SyntenyLcy04g006100
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0090575 - RNA polymerase II transcription factor complex (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
InterPro domainsIPR015660 - Achaete-scute transcription factor-related


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN64266.1 hypothetical protein VITISV_031510 [Vitis vinifera]3.7e-1452.88Show/hide
Query:  RQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTF--HGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVM
        RQ + ++ +  +       L AVS NRLSD E+VVQISTF  H  PLS +LL LEEDGL  +N SS  SFGGRVF NLHLQVE   R  +E ++L EK++
Subjt:  RQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTF--HGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVM

Query:  RLYE
         L E
Subjt:  RLYE

CAN79614.1 hypothetical protein VITISV_027441 [Vitis vinifera]1.4e-1351.92Show/hide
Query:  RQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTF--HGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVM
        R+ + ++ +  + G     L AVS  RLSD E+VVQISTF  H  PLS +LL LEEDGL  +N SS  SFGGRVF NLHLQVE  Q   +E ++L EK++
Subjt:  RQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTF--HGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVM

Query:  RLYE
         L E
Subjt:  RLYE

XP_010653965.1 PREDICTED: transcription factor ORG2 [Vitis vinifera]3.7e-1452.88Show/hide
Query:  RQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTF--HGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVM
        RQ + ++ +  +       L AVS NRLSD E+VVQISTF  H  PLS +LL LEEDGL  +N SS  SFGGRVF NLHLQVE   R  +E ++L EK++
Subjt:  RQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTF--HGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVM

Query:  RLYE
         L E
Subjt:  RLYE

XP_034693284.1 transcription factor ORG2-like [Vitis riparia]4.8e-1452.88Show/hide
Query:  RQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTF--HGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVM
        RQ + ++ +  + G     L AVS NRLSD E+VVQISTF  H  PLS +LL L EDGL  +N SS  SFGGRVF NLHLQVE   R  +E ++L EK++
Subjt:  RQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTF--HGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVM

Query:  RLYE
         L E
Subjt:  RLYE

XP_038882376.1 transcription factor ORG2-like [Benincasa hispida]1.5e-2068.24Show/hide
Query:  MSMMTRRQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTFHGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQ
        +SM+TRR +EE          S   LLAVSTN LS++E+V  ISTFHGIPLSCILLGL+EDGLHPLNISSSLSFGGR+F  LHLQ
Subjt:  MSMMTRRQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTFHGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQ

TrEMBL top hitse value%identityAlignment
A0A438HXF1 Transcription factor ORG26.8e-1451.92Show/hide
Query:  RQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTF--HGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVM
        R+ + ++ +  + G     L AVS  RLSD E+VVQISTF  H  PLS +LL LEEDGL  +N SS  SFGGRVF NLHLQVE  Q   +E ++L EK++
Subjt:  RQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTF--HGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVM

Query:  RLYE
         L E
Subjt:  RLYE

A0A438I684 Transcription factor ORG21.8e-1452.88Show/hide
Query:  RQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTF--HGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVM
        RQ + ++ +  +       L AVS NRLSD E+VVQISTF  H  PLS +LL LEEDGL  +N SS  SFGGRVF NLHLQVE   R  +E ++L EK++
Subjt:  RQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTF--HGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVM

Query:  RLYE
         L E
Subjt:  RLYE

A5C2W4 BHLH domain-containing protein6.8e-1451.92Show/hide
Query:  RQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTF--HGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVM
        R+ + ++ +  + G     L AVS  RLSD E+VVQISTF  H  PLS +LL LEEDGL  +N SS  SFGGRVF NLHLQVE  Q   +E ++L EK++
Subjt:  RQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTF--HGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVM

Query:  RLYE
         L E
Subjt:  RLYE

A5C6G0 BHLH domain-containing protein1.8e-1452.88Show/hide
Query:  RQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTF--HGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVM
        RQ + ++ +  +       L AVS NRLSD E+VVQISTF  H  PLS +LL LEEDGL  +N SS  SFGGRVF NLHLQVE   R  +E ++L EK++
Subjt:  RQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTF--HGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVM

Query:  RLYE
         L E
Subjt:  RLYE

D7TIN8 BHLH domain-containing protein1.8e-1452.88Show/hide
Query:  RQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTF--HGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVM
        RQ + ++ +  +       L AVS NRLSD E+VVQISTF  H  PLS +LL LEEDGL  +N SS  SFGGRVF NLHLQVE   R  +E ++L EK++
Subjt:  RQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTF--HGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVM

Query:  RLYE
         L E
Subjt:  RLYE

SwissProt top hitse value%identityAlignment
A2WZ60 Protein IRON-RELATED TRANSCRIPTION FACTOR 22.8e-0438.71Show/hide
Query:  VSTNRLSDSEVVVQISTFHGI-----PLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQ
        VS   ++D E++VQ+S    +     PLS  +  LE +GLH ++ S+S  FG R F ++HLQ
Subjt:  VSTNRLSDSEVVVQISTFHGI-----PLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQ

Q9FYE6 Transcription factor bHLH1011.3e-0644.83Show/hide
Query:  VSTNRLSDSEVVVQISTFHGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQV
        ++ N L+D+E+ VQI+T     +S +LL LEE+GL+ +++SSS+S   R+F  LHLQ+
Subjt:  VSTNRLSDSEVVVQISTFHGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQV

Q9M1K0 Transcription factor ORG33.7e-0943.9Show/hide
Query:  VSTNRLSDSEVVVQIST--FHGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVMRLYE
        VS  RL D+EV+VQIS+   H   +S +L GLEED    +++SSS S G R+F  LHLQVE+ +   +  + L ++++ LYE
Subjt:  VSTNRLSDSEVVVQIST--FHGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVMRLYE

Q9M1K1 Transcription factor ORG27.5e-1044.71Show/hide
Query:  LLAVSTNRLSDSEVVVQIST--FHGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVMRLYE
        L  VS  RL D+EV+VQ+S+   H   +S +L G+EEDG   +++SSS S G R+F  LHLQVE      I  + L E+++ LYE
Subjt:  LLAVSTNRLSDSEVVVQIST--FHGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVMRLYE

Q9ZVB5 Transcription factor bHLH1001.0e-0641.46Show/hide
Query:  VSTNRLSDSEVVVQISTFHGIPLSC--ILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVMRLYE
        VS+ RLS++EV+VQIS+      S   +L G+EEDGL  +  SSS S G R+F ++HLQ++  Q   +  + L ++++ LYE
Subjt:  VSTNRLSDSEVVVQISTFHGIPLSC--ILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVMRLYE

Arabidopsis top hitse value%identityAlignment
AT2G41240.1 basic helix-loop-helix protein 1007.2e-0841.46Show/hide
Query:  VSTNRLSDSEVVVQISTFHGIPLSC--ILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVMRLYE
        VS+ RLS++EV+VQIS+      S   +L G+EEDGL  +  SSS S G R+F ++HLQ++  Q   +  + L ++++ LYE
Subjt:  VSTNRLSDSEVVVQISTFHGIPLSC--ILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVMRLYE

AT2G41240.2 basic helix-loop-helix protein 1007.2e-0841.46Show/hide
Query:  VSTNRLSDSEVVVQISTFHGIPLSC--ILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVMRLYE
        VS+ RLS++EV+VQIS+      S   +L G+EEDGL  +  SSS S G R+F ++HLQ++  Q   +  + L ++++ LYE
Subjt:  VSTNRLSDSEVVVQISTFHGIPLSC--ILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVMRLYE

AT3G56970.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein5.3e-1144.71Show/hide
Query:  LLAVSTNRLSDSEVVVQIST--FHGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVMRLYE
        L  VS  RL D+EV+VQ+S+   H   +S +L G+EEDG   +++SSS S G R+F  LHLQVE      I  + L E+++ LYE
Subjt:  LLAVSTNRLSDSEVVVQIST--FHGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVMRLYE

AT3G56980.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.6e-1043.9Show/hide
Query:  VSTNRLSDSEVVVQIST--FHGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVMRLYE
        VS  RL D+EV+VQIS+   H   +S +L GLEED    +++SSS S G R+F  LHLQVE+ +   +  + L ++++ LYE
Subjt:  VSTNRLSDSEVVVQIST--FHGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVMRLYE

AT5G04150.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein9.4e-0844.83Show/hide
Query:  VSTNRLSDSEVVVQISTFHGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQV
        ++ N L+D+E+ VQI+T     +S +LL LEE+GL+ +++SSS+S   R+F  LHLQ+
Subjt:  VSTNRLSDSEVVVQISTFHGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATGATGACGAGGAGACAAGAAGAAGAAGTAAACTGGAAAATAAACAAAGGTGGTCGGAGCTGTCGTCCCTTGTTGGCTGTCTCAACCAACAGGCTTAGTGACAG
TGAAGTTGTTGTCCAAATTTCCACCTTTCATGGAATCCCTTTGTCTTGCATCTTGCTTGGATTAGAGGAAGATGGGCTTCACCCTCTCAATATTTCTTCATCTTTGTCCT
TTGGTGGGAGGGTCTTCTGCAATTTACATCTTCAGGTTGAAAGGGCACAAAGAGGGTTGATTGAATACAAAATTCTTATTGAGAAAGTGATGCGATTATACGAGAATATT
AA
mRNA sequenceShow/hide mRNA sequence
ATGTCGATGATGACGAGGAGACAAGAAGAAGAAGTAAACTGGAAAATAAACAAAGGTGGTCGGAGCTGTCGTCCCTTGTTGGCTGTCTCAACCAACAGGCTTAGTGACAG
TGAAGTTGTTGTCCAAATTTCCACCTTTCATGGAATCCCTTTGTCTTGCATCTTGCTTGGATTAGAGGAAGATGGGCTTCACCCTCTCAATATTTCTTCATCTTTGTCCT
TTGGTGGGAGGGTCTTCTGCAATTTACATCTTCAGGTTGAAAGGGCACAAAGAGGGTTGATTGAATACAAAATTCTTATTGAGAAAGTGATGCGATTATACGAGAATATT
AA
Protein sequenceShow/hide protein sequence
MSMMTRRQEEEVNWKINKGGRSCRPLLAVSTNRLSDSEVVVQISTFHGIPLSCILLGLEEDGLHPLNISSSLSFGGRVFCNLHLQVERAQRGLIEYKILIEKVMRLYENI