CuGenDBv2

Gene ID	Lcy04g010700
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Mediator of RNA polymerase II transcription subunit 4
Genome location	Chr04:42068915..42071493
RNA-Seq Expression	Lcy04g010700
Synteny	Lcy04g010700
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016592 - mediator complex (cellular component) GO:0070847 - core mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR019258 - Mediator complex, subunit Med4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004142109.1 mediator of RNA polymerase II transcription subunit 4 [Cucumis sativus]

1.1e-201

92.87

Show/hide

Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL
        M+QHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQS HQNQSNLSS TPSSTLLPLLPPLPRAQALLLQMASL+SKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV
        TSQ+QSSPST LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQK+A+EIRAKDAALRAFANKLK+AEQVLDVLFDDYADYQRPRR KT+ D 
Subjt:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV

Query:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA
        ENESLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVE+TEKTIEPMIEPPAPV  DANP  
Subjt:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE
         LAAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS+E
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE

Query:  GSSDDDD
        GSS+DDD
Subjt:  GSSDDDD

XP_008449288.1 PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo]

1.4e-204

93.12

Show/hide

Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL
        M+QHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQS HQNQSN+SS TPSSTLLPLLPPLPRAQALLLQMASL+SKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV
        TSQ+QSSPST LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQK+A+EIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKT+   
Subjt:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV

Query:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA
        ENESLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVE+TEKTIEPMIEPPAPV  DANPL+
Subjt:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE
        N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS+E
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE

Query:  GSSDDDD
        GSS+DDD
Subjt:  GSSDDDD

XP_022143910.1 mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]

7.3e-209

94.85

Show/hide

Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL
        M+QHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQS HQNQ NLSSPTPSSTLLPLLPPLPRAQALLLQMA+L+SKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV
         SQ+QSSPSTPLD+TPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQK+A+EIRAKDAALRAFANKLKDAEQVLDVLFDDYADY+RP+RVKTKDDV
Subjt:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV

Query:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA
        EN+SLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVE+TEKTIEPMIEPPAPVPTDANPLA
Subjt:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSE
        NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPV RVDEP QLRPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTS+
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSE

Query:  EGSSDDDD
        EGSS+DDD
Subjt:  EGSSDDDD

XP_023518528.1 mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo]

4.6e-203

93.38

Show/hide

Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL
        M+QHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQS HQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASL+SKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV
         SQ+QS+PSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQK+A+E+RAKDAALRAFANKLKDAEQVLDVLFDDYADYQ  +RVKT DDV
Subjt:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV

Query:  ENESLC-STTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPL
        ENESLC STTVASQLKLSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLY+FADLDVGLPK+VE+TEKTIEPMIEPPAPVPTDANPL
Subjt:  ENESLC-STTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPL

Query:  ANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSE
        A LA IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLR NALPGLH+P EPIQVRHVQLDILDQDDDSSDY SE
Subjt:  ANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSE

Query:  EGSSDDDD
        EGSS+DDD
Subjt:  EGSSDDDD

XP_038882754.1 mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida]

4.3e-209

94.1

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Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL
        M+QHQIVQSPARLGL NPNSPSIQNPTPPKLPPSQQS HQNQ N+SSPTPSSTLLPLLPPLPRAQALLLQMASL+SKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV
        TSQ+QSSPST LDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQK+A+EIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVK KDD 
Subjt:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV

Query:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA
        ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LD+GLPKAVE+TEKTIEPMIEPPAPVPTDANPL+
Subjt:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE
        N+A+IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDEPQLRPNA PGLHKPPEPIQVRHVQLDILDQDDDSSDYTS+E
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE

Query:  GSSDDDD
        GSS+DDD
Subjt:  GSSDDDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KXB7 Mediator of RNA polymerase II transcription subunit 4

5.5e-202

92.87

Show/hide

Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL
        M+QHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQS HQNQSNLSS TPSSTLLPLLPPLPRAQALLLQMASL+SKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV
        TSQ+QSSPST LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQK+A+EIRAKDAALRAFANKLK+AEQVLDVLFDDYADYQRPRR KT+ D 
Subjt:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV

Query:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA
        ENESLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVE+TEKTIEPMIEPPAPV  DANP  
Subjt:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE
         LAAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS+E
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE

Query:  GSSDDDD
        GSS+DDD
Subjt:  GSSDDDD

A0A1S3BLP6 Mediator of RNA polymerase II transcription subunit 4

6.9e-205

93.12

Show/hide

Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL
        M+QHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQS HQNQSN+SS TPSSTLLPLLPPLPRAQALLLQMASL+SKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV
        TSQ+QSSPST LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQK+A+EIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKT+   
Subjt:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV

Query:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA
        ENESLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVE+TEKTIEPMIEPPAPV  DANPL+
Subjt:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE
        N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS+E
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE

Query:  GSSDDDD
        GSS+DDD
Subjt:  GSSDDDD

A0A5A7TZC1 Mediator of RNA polymerase II transcription subunit 4

6.9e-205

93.12

Show/hide

Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL
        M+QHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQS HQNQSN+SS TPSSTLLPLLPPLPRAQALLLQMASL+SKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV
        TSQ+QSSPST LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQK+A+EIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKT+   
Subjt:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV

Query:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA
        ENESLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVE+TEKTIEPMIEPPAPV  DANPL+
Subjt:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE
        N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTS+E
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEE

Query:  GSSDDDD
        GSS+DDD
Subjt:  GSSDDDD

A0A6J1CQ51 Mediator of RNA polymerase II transcription subunit 4

3.5e-209

94.85

Show/hide

Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL
        M+QHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQS HQNQ NLSSPTPSSTLLPLLPPLPRAQALLLQMA+L+SKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV
         SQ+QSSPSTPLD+TPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQK+A+EIRAKDAALRAFANKLKDAEQVLDVLFDDYADY+RP+RVKTKDDV
Subjt:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV

Query:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA
        EN+SLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVE+TEKTIEPMIEPPAPVPTDANPLA
Subjt:  ENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLA

Query:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSE
        NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPV RVDEP QLRPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTS+
Subjt:  NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSE

Query:  EGSSDDDD
        EGSS+DDD
Subjt:  EGSSDDDD

A0A6J1HH73 Mediator of RNA polymerase II transcription subunit 4

9.3e-202

92.89

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Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL
        M+QHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQS HQN SNLSSPTPSSTLLPLLPPLPRAQALLLQMASL+SKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV
         SQ+QS+PSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQK+A+E+RAKDAALRAFANKLKDAEQVLDVLFDDYADYQ  +RVKT DDV
Subjt:  TSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDV

Query:  ENESLCS-TTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPL
        ENESLCS TTVASQLKLSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLY FADLDVGLPK+VE+TEKTIEPMIE PAPVPTDANPL
Subjt:  ENESLCS-TTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPL

Query:  ANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSE
        A LA IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLR NALPGLH+P EPIQVRHVQLDILDQDDDSSDY SE
Subjt:  ANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSE

Query:  EGSSDDDD
        EGSS+DDD
Subjt:  EGSSDDDD

SwissProt top hits

e value

%identity

Alignment

Q54D00 Putative mediator of RNA polymerase II transcription subunit 4

2.1e-04

29.7

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Query:  LTSQSQSSPSTPLD--STPSTSKEILSLFNVL--QTQLFE-AVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRV
        L SQ       P+D  S  +T   +L L N L    ++++  + +L++   +Q    ++  EI  KD  +   A  LKD E  L+       D       
Subjt:  LTSQSQSSPSTPLD--STPSTSKEILSLFNVL--QTQLFE-AVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRV

Query:  KTKDDVENESL-----------CSTTVASQLKLSDILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQEEQMRASQL-----------YNFADLDVG
           D + NE L               V  ++   D++SYAH+IS TT AP  FG    APL     PPAPQ+E MR+S L           Y  A++DV 
Subjt:  KTKDDVENESL-----------CSTTVASQLKLSDILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQEEQMRASQL-----------YNFADLDVG

Query:  LP
         P
Subjt:  LP

Q9LZ00 Mediator of RNA polymerase II transcription subunit 4

8.3e-139

65.67

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Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSQH---QNQSNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLSSKL
        M+QHQIVQSPARLGLT P SPS+QNPTP     P    S QSQH   Q Q NL              S+   SS LL LLPPLPRAQALL QMA L+SKL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSQH---QNQSNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLSSKL

Query:  FEVSPNRSLWLTAFRGSLPTFLTSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVL
        F+VSPNR++WL+AFRGSLP+FL+S S   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQKVA EI++KD++L AFANKLKDAE+VL
Subjt:  FEVSPNRSLWLTAFRGSLPTFLTSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVL

Query:  DVLFDDYADYQRPRRVKTKDDVEN----ESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKA
        D+L DDY+DY++P+R K ++D E+     S  STTV+SQLKL DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY FADLD+GLPK 
Subjt:  DVLFDDYADYQRPRRVKTKDDVEN----ESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKA

Query:  VETTEKTIEPMIEPPAPVPTDANPLANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQ-LRPNALPGLHKP
        VE  EK +E +IEPP P         +++AI  LLPPNI VPSGWKPGMPVELPRDLP+PPPGWKPGDPV LPPL+S+   R ++ Q +RP+   GLH+P
Subjt:  VETTEKTIEPMIEPPAPVPTDANPLANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQ-LRPNALPGLHKP

Query:  PEPIQVRHVQLDILDQDDDSSDYTSEEGSSDDDD
        P+ IQVR VQLDIL +DDDSSDY+S++ SSDD+D
Subjt:  PEPIQVRHVQLDILDQDDDSSDYTSEEGSSDDDD

Arabidopsis top hits

e value

%identity

Alignment

AT5G02850.1 hydroxyproline-rich glycoprotein family protein

5.9e-140

65.67

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Query:  MIQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSQH---QNQSNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLSSKL
        M+QHQIVQSPARLGLT P SPS+QNPTP     P    S QSQH   Q Q NL              S+   SS LL LLPPLPRAQALL QMA L+SKL
Subjt:  MIQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSQH---QNQSNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLSSKL

Query:  FEVSPNRSLWLTAFRGSLPTFLTSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVL
        F+VSPNR++WL+AFRGSLP+FL+S S   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQKVA EI++KD++L AFANKLKDAE+VL
Subjt:  FEVSPNRSLWLTAFRGSLPTFLTSQSQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVL

Query:  DVLFDDYADYQRPRRVKTKDDVEN----ESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKA
        D+L DDY+DY++P+R K ++D E+     S  STTV+SQLKL DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY FADLD+GLPK 
Subjt:  DVLFDDYADYQRPRRVKTKDDVEN----ESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKA

Query:  VETTEKTIEPMIEPPAPVPTDANPLANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQ-LRPNALPGLHKP
        VE  EK +E +IEPP P         +++AI  LLPPNI VPSGWKPGMPVELPRDLP+PPPGWKPGDPV LPPL+S+   R ++ Q +RP+   GLH+P
Subjt:  VETTEKTIEPMIEPPAPVPTDANPLANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQ-LRPNALPGLHKP

Query:  PEPIQVRHVQLDILDQDDDSSDYTSEEGSSDDDD
        P+ IQVR VQLDIL +DDDSSDY+S++ SSDD+D
Subjt:  PEPIQVRHVQLDILDQDDDSSDYTSEEGSSDDDD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATTCAGCATCAAATTGTTCAGTCCCCAGCTCGATTGGGCTTGACGAATCCGAATTCTCCCTCTATTCAAAACCCTACCCCTCCAAAATTGCCCCCTTCTCAA
CAATCCCAACACCAAAATCAATCCAATCTCTCTTCTCCAACTCCCTCTTCCACCCTTCTCCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTTCAA
ATGGCTTCTTTATCCTCTAAGCTCTTTGAAGTTTCCCCAAATCGATCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTTCTTACTTCTCAATCTCAG
TCGTCTCCCTCTACGCCTCTTGATTCTACTCCGTCTACTTCGAAAGAAATTCTGTCCCTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCTGAGCTT
CAGGAGATTCTTGATCTTCAAGACTCTAAGCAGAAGGTTGCTTTTGAAATACGGGCTAAAGATGCTGCTCTTCGTGCTTTTGCTAATAAACTTAAGGATGCTGAG
CAGGTTCTTGATGTTTTGTTTGATGATTATGCGGATTATCAGCGTCCTCGACGGGTTAAAACGAAGGATGATGTTGAAAATGAGTCTTTGTGTTCTACTACTGTT
GCATCCCAGTTGAAATTATCTGATATATTGTCGTATGCTCATAGAATAAGCTATACTACTTTCGCACCACCTGAATTTGGGGCTGGACAAGCTCCGTTACGTGGG
GCACTTCCCCCCGCCCCACAAGAAGAGCAAATGCGTGCATCCCAGTTGTATAATTTTGCAGATCTTGATGTTGGCTTGCCTAAAGCAGTTGAAACCACTGAGAAA
ACTATTGAGCCAATGATTGAGCCTCCAGCTCCAGTGCCAACAGATGCTAATCCTCTTGCTAATCTGGCTGCTATTCAGGGCTTGCTTCCTCCAAATATCACTGTC
CCATCTGGTTGGAAGCCTGGAATGCCTGTGGAATTACCTAGAGATTTACCAATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTACCCCCATTGGAC
TCTCTTCCTGTTGCTAGAGTTGATGAGCCACAATTGAGGCCTAATGCTCTTCCAGGATTACACAAACCTCCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGAT
ATTCTTGATCAAGATGATGATAGCAGTGATTACACTAGTGAAGAAGGAAGCTCTGATGATGATGATTGA

mRNA sequence

Show/hide mRNA sequence

GCCGGCTCAGTGGCGCCGAATCGCCGATCTTCTCCTCCTCTCGATCTCAGGTTCTCTCAATTCCTATACTTTTCTTTCAAGTTTCAGATTGTTCTTCTTCTGTGT
TTTTCTGCATGAATTAAACCCTAATATGATCCATTGAAGCACACAACAATATGATTCAGCATCAAATTGTTCAGTCCCCAGCTCGATTGGGCTTGACGAATCCGA
ATTCTCCCTCTATTCAAAACCCTACCCCTCCAAAATTGCCCCCTTCTCAACAATCCCAACACCAAAATCAATCCAATCTCTCTTCTCCAACTCCCTCTTCCACCC
TTCTCCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTTCAAATGGCTTCTTTATCCTCTAAGCTCTTTGAAGTTTCCCCAAATCGATCCCTTTGGC
TCACTGCATTTCGGGGTTCTCTTCCCACTTTTCTTACTTCTCAATCTCAGTCGTCTCCCTCTACGCCTCTTGATTCTACTCCGTCTACTTCGAAAGAAATTCTGT
CCCTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCTGAGCTTCAGGAGATTCTTGATCTTCAAGACTCTAAGCAGAAGGTTGCTTTTGAAATACGGG
CTAAAGATGCTGCTCTTCGTGCTTTTGCTAATAAACTTAAGGATGCTGAGCAGGTTCTTGATGTTTTGTTTGATGATTATGCGGATTATCAGCGTCCTCGACGGG
TTAAAACGAAGGATGATGTTGAAAATGAGTCTTTGTGTTCTACTACTGTTGCATCCCAGTTGAAATTATCTGATATATTGTCGTATGCTCATAGAATAAGCTATA
CTACTTTCGCACCACCTGAATTTGGGGCTGGACAAGCTCCGTTACGTGGGGCACTTCCCCCCGCCCCACAAGAAGAGCAAATGCGTGCATCCCAGTTGTATAATT
TTGCAGATCTTGATGTTGGCTTGCCTAAAGCAGTTGAAACCACTGAGAAAACTATTGAGCCAATGATTGAGCCTCCAGCTCCAGTGCCAACAGATGCTAATCCTC
TTGCTAATCTGGCTGCTATTCAGGGCTTGCTTCCTCCAAATATCACTGTCCCATCTGGTTGGAAGCCTGGAATGCCTGTGGAATTACCTAGAGATTTACCAATGC
CCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTACCCCCATTGGACTCTCTTCCTGTTGCTAGAGTTGATGAGCCACAATTGAGGCCTAATGCTCTTCCAG
GATTACACAAACCTCCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGATATTCTTGATCAAGATGATGATAGCAGTGATTACACTAGTGAAGAAGGAAGCTCTG
ATGATGATGATTGAGGGAAACAGCCTGGATCGCCAACTATGACGCCTAAATGACTGCCTGGTGACAAAAGATGCATGAGTGTAGAAACAATCAAAAGATTTGCCT
ACTAGCAGCAACCCTTTAAAGAGTGTGCAATAGTTCACTGATCACTGAATATGGATGAGGCTAAGCGATCTGCCTGAGGAAAGGTTAAATTTCGTACTTTCAAGC
TTACATGATACTGATGATTTGTTTTGCATTCACAGGGTCAACTTGAAACACACAAATCTTTTCAACTTTTTAATTGAAAAGCTATAACTTTCCTGACTTGAGTTC
TTTTACACATGTTTCCCTTGTTTTGAATGTGAGCTTACACAAACTTTCTTAGGATATTTTAAACCTGAGTAAAGAGTGTCCTAACTGTAATACCATGTCGCCGTT
GAATCAAGTATTGACCGAGGATTATGATTTGAAGGAAATTGATTAGATTATTTTATGTTGGTGGCATTCCTAGTAAAATCTGTGTAGTACAAGTTTTTATGAGAT
TCTGTTTGATATGACTTGGTACTTTGAAAGAAAATGCTCTGAAATGAAGATTGCTGTTGTCGAAGCTTTTTCTCATATGATGAAGAACAGTGGTGTAGAAGATGA
AGATTTAGGAATTTCTGAAAAAGCTATAGTGCGTAGTATTTTCTATGACATCCTTGGCTGTTTTAGAAGAGGCTTCAAATTCGGAAAGTTTTGAAGCTGCTGGAA
GGTATGGATTTTAATCTTTTATGAGGTCCATGAAATAAACGTAAGAGTTTATTGGTTTTCAAGATGGTTCAAGAACATGTTATGGGCTTAGACTCATATAAAGTA
CATGTATGACTTGTGGAGGCATGAACATTATTTCTAACCTTCAGCTATTGCAGCCTGCAATTCTTTTGGTATACAATTTTCTTTAGTTTTTGTTTTGTAACTTGT
AGGGTTGAAATGTTTAGATTTTTTTTTTGGGGGCGGGTGCGGGTGGAAGATTTGAACTACAAACCGCTTGGTCATTAGTACGAACTTTATACAAGTTGAGTTATG
TTCATGTTTGTGAAAAGTTTAGATTTCTGTTGCTAGTGTTTGAAACTTTTTATCATGTTCTAATCACATTGAATTTTATCCCATGTATTATCACATGACAAATAA
ATGCAGTCTAATAACAAATGTTATTTTTTTCTTCGGTTCATACGCAAAATTAAGCTACA

Protein sequence

Show/hide protein sequence

MIQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSQHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLSSKLFEVSPNRSLWLTAFRGSLPTFLTSQSQ
SSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKVAFEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDVENESLCSTTV
ASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVETTEKTIEPMIEPPAPVPTDANPLANLAAIQGLLPPNITV
PSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSEEGSSDDDD

Lcy04g010700 (gene) of Sponge gourd (P93075) v1 genome