CuGenDBv2

Gene ID	Lcy04g011920
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Pectin lyase-like superfamily protein
Genome location	Chr04:43730868..43732444
RNA-Seq Expression	Lcy04g011920
Synteny	Lcy04g011920
Gene Ontology terms	GO:0005975 - carbohydrate metabolic process (biological process) GO:0004650 - polygalacturonase activity (molecular function)
InterPro domains	IPR000743 - Glycoside hydrolase, family 28 IPR011050 - Pectin lyase fold/virulence factor IPR012334 - Pectin lyase fold

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008437531.1 PREDICTED: probable polygalacturonase [Cucumis melo]

1.0e-48

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Query:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT
        MPTEDL+IRRLTCIS DS  IALGSEM GGIRNVRIENVT INTQ AVRIKTA GRGGFVKDIFVRGM+LSTMKYVFWMTGNYKSHPD KFDP ALPEIT
Subjt:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT

Query:  NINYRDVVAENKIMYSYSYPLLRLPNIAIGFFGNI
        NINYRDVVAEN + YS      RL  I+   F NI
Subjt:  NINYRDVVAENKIMYSYSYPLLRLPNIAIGFFGNI

XP_011654644.1 probable polygalacturonase [Cucumis sativus]

1.2e-47

77.78

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Query:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT
        MPTEDL+I+RLTCIS DS  +ALGSEM GGIRNVRIEN T INTQ AVRIKTA GRGGFVKDIFVRGM+LSTMKYVFWMTGNYKSHPD KFDP ALPEIT
Subjt:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT

Query:  NINYRDVVAENKIMYSYSYPLLRLPNIAIGFFGNI
        NINYRDVVAEN + YS      RL  I+   F NI
Subjt:  NINYRDVVAENKIMYSYSYPLLRLPNIAIGFFGNI

XP_022996001.1 probable polygalacturonase [Cucurbita maxima]

4.0e-48

87.93

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Query:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT
        MPTEDLLIRRLTCIS DS  IALGSEM GGIRNVRIENVT INTQ AVRIKTA GRGG+VKDIFVR MFLSTMKYVFWMTGNYKSHPD KFDPKALPEI 
Subjt:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT

Query:  NINYRDVVAENKIMYS
        NINYRDVVAEN + YS
Subjt:  NINYRDVVAENKIMYS

XP_023532553.1 probable polygalacturonase [Cucurbita pepo subsp. pepo]

4.0e-48

87.93

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Query:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT
        MPTEDLLIRRLTCIS DS  IALGSEM GGIRNVRIENVT INTQ AVRIKTA GRGG+VKDIFVR MFLSTMKYVFWMTGNYKSHPD KFDPKALPEI 
Subjt:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT

Query:  NINYRDVVAENKIMYS
        NINYRDVVAEN + YS
Subjt:  NINYRDVVAENKIMYS

XP_038906749.1 probable polygalacturonase [Benincasa hispida]

4.0e-48

87.07

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Query:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT
        MPTEDL+IRRLTCIS DS  IALGSEM GGIRNVRIENVT INTQ AVRIKTA GRGGFVKDIFVRGM+LSTMKYVFWMTGNYKSHPD KFDP A+PEIT
Subjt:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT

Query:  NINYRDVVAENKIMYS
        NINYRDVVAEN + YS
Subjt:  NINYRDVVAENKIMYS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KNF9 Uncharacterized protein

5.6e-48

77.78

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Query:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT
        MPTEDL+I+RLTCIS DS  +ALGSEM GGIRNVRIEN T INTQ AVRIKTA GRGGFVKDIFVRGM+LSTMKYVFWMTGNYKSHPD KFDP ALPEIT
Subjt:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT

Query:  NINYRDVVAENKIMYSYSYPLLRLPNIAIGFFGNI
        NINYRDVVAEN + YS      RL  I+   F NI
Subjt:  NINYRDVVAENKIMYSYSYPLLRLPNIAIGFFGNI

A0A1S3AUV5 probable polygalacturonase

5.1e-49

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Query:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT
        MPTEDL+IRRLTCIS DS  IALGSEM GGIRNVRIENVT INTQ AVRIKTA GRGGFVKDIFVRGM+LSTMKYVFWMTGNYKSHPD KFDP ALPEIT
Subjt:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT

Query:  NINYRDVVAENKIMYSYSYPLLRLPNIAIGFFGNI
        NINYRDVVAEN + YS      RL  I+   F NI
Subjt:  NINYRDVVAENKIMYSYSYPLLRLPNIAIGFFGNI

A0A5D3C461 Putative polygalacturonase

5.1e-49

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Query:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT
        MPTEDL+IRRLTCIS DS  IALGSEM GGIRNVRIENVT INTQ AVRIKTA GRGGFVKDIFVRGM+LSTMKYVFWMTGNYKSHPD KFDP ALPEIT
Subjt:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT

Query:  NINYRDVVAENKIMYSYSYPLLRLPNIAIGFFGNI
        NINYRDVVAEN + YS      RL  I+   F NI
Subjt:  NINYRDVVAENKIMYSYSYPLLRLPNIAIGFFGNI

A0A6J1H0R5 probable polygalacturonase

7.3e-48

87.07

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Query:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT
        MPTEDLLIRRLTCIS DS  IALGSEM GGIRNVRIENVT INTQ AVRIKTA GRGG+VKDIFVR MFLSTMKYVFWMTG+YKSHPD KFDPKALPEI 
Subjt:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT

Query:  NINYRDVVAENKIMYS
        NINYRDVVAEN + YS
Subjt:  NINYRDVVAENKIMYS

A0A6J1K3G8 probable polygalacturonase

1.9e-48

87.93

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Query:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT
        MPTEDLLIRRLTCIS DS  IALGSEM GGIRNVRIENVT INTQ AVRIKTA GRGG+VKDIFVR MFLSTMKYVFWMTGNYKSHPD KFDPKALPEI 
Subjt:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT

Query:  NINYRDVVAENKIMYS
        NINYRDVVAEN + YS
Subjt:  NINYRDVVAENKIMYS

SwissProt top hits

e value

%identity

Alignment

A7PZL3 Probable polygalacturonase

1.2e-36

64.04

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Query:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT
        MPT+ L+IRRLTCIS  S  IALGSEM GGI++VR E++  IN++  +RIKT  GRGG+VKDI+VRGM + TMK+ FWMTGNY SH D  +DPKA P I 
Subjt:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT

Query:  NINYRDVVAENKIM
         INYRD+VAEN  M
Subjt:  NINYRDVVAENKIM

Arabidopsis top hits

e value

%identity

Alignment

AT2G23900.1 Pectin lyase-like superfamily protein

1.6e-39

67.57

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Query:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT
        MPT+ L IRRLTCIS DS  IALGSEM GGI++VRIE++T + TQ A+RIKTA GRGG+VKDIF R   + TMKYVFWM+G Y  HP + FDPKA+P IT
Subjt:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT

Query:  NINYRDVVAEN
        NINYRD+ A+N
Subjt:  NINYRDVVAEN

AT3G48950.1 Pectin lyase-like superfamily protein

2.9e-41

69.3

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Query:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT
        MPT+ L IRRLTCIS  S  +ALGSEM GGI++VRIE+VT  NT+ A+RIKTA GRG +VKDI+ R + + TMKYVFWM+GNY SHPD  FDPKALPEIT
Subjt:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT

Query:  NINYRDVVAENKIM
        NINYRD+ AEN  M
Subjt:  NINYRDVVAENKIM

AT3G61490.1 Pectin lyase-like superfamily protein

2.1e-39

67.54

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Query:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT
        MPT+ L+IRRLTCIS  S  IALGSEM GGI +VR E++T   T+  VRIKTA GRG FVK+I+V+GM L TMK+VFWMTGNYK+H D+ +DP ALPEIT
Subjt:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT

Query:  NINYRDVVAENKIM
         INYRD+VAEN  M
Subjt:  NINYRDVVAENKIM

AT3G61490.2 Pectin lyase-like superfamily protein

2.1e-39

67.54

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Query:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT
        MPT+ L+IRRLTCIS  S  IALGSEM GGI +VR E++T   T+  VRIKTA GRG FVK+I+V+GM L TMK+VFWMTGNYK+H D+ +DP ALPEIT
Subjt:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT

Query:  NINYRDVVAENKIM
         INYRD+VAEN  M
Subjt:  NINYRDVVAENKIM

AT4G23500.1 Pectin lyase-like superfamily protein

2.2e-41

68.42

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Query:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT
        MPT+ LLIRRLTCIS DS  IALGSEM GGI +VR E++  IN++  +RIKTA GRGG+VKD++VRGM + TMKYVFWMTG+Y SHPD  +DPKALP I 
Subjt:  MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEIT

Query:  NINYRDVVAENKIM
        NINY+D+VAEN  M
Subjt:  NINYRDVVAENKIM

Sequences

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CDS sequence

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ATGCCGACGGAGGATCTCCTCATCCGCCGTCTCACCTGCATCTCATCTGATTCCGTCGAAATCGCCCTCGGTAGCGAAATGTTCGGCGGAATCCGCAACGTCAGGATTGA
AAACGTCACCACGATCAACACTCAGTTCGCCGTCAGAATCAAAACCGCTGCCGGCAGAGGTGGATTCGTGAAGGACATTTTCGTCCGAGGGATGTTTCTCTCCACGATGA
AATACGTTTTCTGGATGACCGGAAACTACAAGTCGCATCCGGATACGAAGTTCGATCCGAAGGCACTGCCGGAGATTACGAACATTAATTACAGAGACGTGGTGGCGGAG
AATAAGATAATGTACAGTTATTCTTATCCACTTTTGCGGCTGCCTAACATAGCTATTGGTTTCTTTGGAAATATAACTCCACAAGAAGAATATTCCACATCAAACCCCTA
G

mRNA sequence

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Protein sequence

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MPTEDLLIRRLTCISSDSVEIALGSEMFGGIRNVRIENVTTINTQFAVRIKTAAGRGGFVKDIFVRGMFLSTMKYVFWMTGNYKSHPDTKFDPKALPEITNINYRDVVAE
NKIMYSYSYPLLRLPNIAIGFFGNITPQEEYSTSNP

Lcy04g011920 (gene) of Sponge gourd (P93075) v1 genome