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Lcy04g018120 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy04g018120
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr04:50055655..50056120
RNA-Seq ExpressionLcy04g018120
SyntenyLcy04g018120
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8733199.1 hypothetical protein F3Y22_tig00001478pilonHSYRG00382 [Hibiscus syriacus]3.2e-0633.02Show/hide
Query:  AEAVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLESYPEWMVS
        AEA+A    LRLA +L   +L +  ++LT+I  IN   + +S I  +I +I+E  +SFE+++F  + RK N+  H ++ VG + ++P +W+E  P  M  
Subjt:  AEAVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLESYPEWMVS

Query:  LSLNER
         ++ ++
Subjt:  LSLNER

KAF7831475.1 F-box protein interaction domain protein [Senna tora]2.5e-0634.51Show/hide
Query:  GDRGTSGAEAVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLES
        G  G    EA A+L G+  A+EL   ++ I  ++  ++  +N+E +  S + +VI DI  +R SF+ +SF ++SR  N  AH+++ +G  S S  +WLE 
Subjt:  GDRGTSGAEAVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLES

Query:  YP-EWMVSLSLNE
         P E M  L+L +
Subjt:  YP-EWMVSLSLNE

MBA0605455.1 hypothetical protein [Gossypium davidsonii]1.6e-0536.46Show/hide
Query:  AEAVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLESYPE
        AEA+AV+ GLR A +LD   + +   S ++I+ I +  +  S I+T+ W+ +E+ KSF    F F+ R  N  AH M+R GL       W+E  P+
Subjt:  AEAVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLESYPE

MBA0829884.1 hypothetical protein [Gossypium armourianum]2.1e-0537.25Show/hide
Query:  RGTSG--AEAVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLES
        RG SG   EAVAV+ GLR A+EL    + +  +S ++ K IN   Q  S  + + W  +E+   F+  +F FI R  N  AH M++ GLS      W+E 
Subjt:  RGTSG--AEAVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLES

Query:  YP
         P
Subjt:  YP

XP_019150693.1 PREDICTED: uncharacterized protein LOC109147547 [Ipomoea nil]1.6e-0531.68Show/hide
Query:  AEAVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLESYPEWMVS
        AEA A+ E L  A+  D+ ++ +  +   +  ++N  +   S    VI D RE+++ F+MVSF ++SR  N  AH ++R   S + P  W+ ++P  + S
Subjt:  AEAVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLESYPEWMVS

Query:  L
        L
Subjt:  L

TrEMBL top hitse value%identityAlignment
A0A2N9H705 Uncharacterized protein2.3e-0531.31Show/hide
Query:  AVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLESYPEWMVSL
        A+AVL GL+ A ++ +  + + + S  L+ ++     C + +  ++ DI  ++KSF ++ F F+S+  N  AH ++   LSS++  +WLE YP  ++SL
Subjt:  AVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLESYPEWMVSL

A0A6A3D1Q4 RNase H domain-containing protein1.6e-0633.02Show/hide
Query:  AEAVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLESYPEWMVS
        AEA+A    LRLA +L   +L +  ++LT+I  IN   + +S I  +I +I+E  +SFE+++F  + RK N+  H ++ VG + ++P +W+E  P  M  
Subjt:  AEAVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLESYPEWMVS

Query:  LSLNER
         ++ ++
Subjt:  LSLNER

A0A7J8QVB8 RNase H domain-containing protein7.8e-0636.46Show/hide
Query:  AEAVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLESYPE
        AEA+AV+ GLR A +LD   + +   S ++I+ I +  +  S I+T+ W+ +E+ KSF    F F+ R  N  AH M+R GL       W+E  P+
Subjt:  AEAVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLESYPE

A0A7J9J7L7 RNase H domain-containing protein1.0e-0537.25Show/hide
Query:  RGTSG--AEAVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLES
        RG SG   EAVAV+ GLR A+EL    + +  +S ++ K IN   Q  S  + + W  +E+   F+  +F FI R  N  AH M++ GLS      W+E 
Subjt:  RGTSG--AEAVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLES

Query:  YP
         P
Subjt:  YP

A0A7J9KM45 RNase H domain-containing protein2.3e-0534.38Show/hide
Query:  AEAVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLESYPE
        AEA+AV+ GLR A +LD   + +      +I+ I + ++  S I+ + W+ +E+ KSF    F F+ R  N  AH M+R GL       W+E  P+
Subjt:  AEAVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLESYPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGATAGGGGTACAAGTGGGGCGGAAGCGGTTGCAGTGCTAGAAGGACTCCGTCTGGCTCGGGAGTTGGATGTGCATCAATTAACGATTTTGTTGAATTCGTTGAC
TTTAATCAAAATTATTAACGAGGAAATCCAATGTCAGTCTTGCATTACTACAGTGATCTGGGATATTAGAGAAGTCAGAAAATCTTTTGAGATGGTCAGTTTTAAATTCA
TTAGCCGTAAATTCAATAGTTTTGCTCATAAGATGTCCCGTGTGGGTCTCTCGTCTTCATCGCCTTTTTTGTGGCTAGAAAGTTATCCTGAATGGATGGTTAGTTTATCG
CTCAATGAGCGAGGTCTGTTTGTTTCCCATCGGGATTCTAGTGCTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGATAGGGGTACAAGTGGGGCGGAAGCGGTTGCAGTGCTAGAAGGACTCCGTCTGGCTCGGGAGTTGGATGTGCATCAATTAACGATTTTGTTGAATTCGTTGAC
TTTAATCAAAATTATTAACGAGGAAATCCAATGTCAGTCTTGCATTACTACAGTGATCTGGGATATTAGAGAAGTCAGAAAATCTTTTGAGATGGTCAGTTTTAAATTCA
TTAGCCGTAAATTCAATAGTTTTGCTCATAAGATGTCCCGTGTGGGTCTCTCGTCTTCATCGCCTTTTTTGTGGCTAGAAAGTTATCCTGAATGGATGGTTAGTTTATCG
CTCAATGAGCGAGGTCTGTTTGTTTCCCATCGGGATTCTAGTGCTTCTTAA
Protein sequenceShow/hide protein sequence
MGDRGTSGAEAVAVLEGLRLARELDVHQLTILLNSLTLIKIINEEIQCQSCITTVIWDIREVRKSFEMVSFKFISRKFNSFAHKMSRVGLSSSSPFLWLESYPEWMVSLS
LNERGLFVSHRDSSAS