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Lcy04g018190 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy04g018190
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr04:50114499..50114912
RNA-Seq ExpressionLcy04g018190
SyntenyLcy04g018190
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR40694.1 hypothetical protein CICLE_v10027161mg, partial [Citrus clementina]3.8e-0833.61Show/hide
Query:  MLTFLKVVSFVVDVDLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRG-HFSLCRRELNRVAHEAARVAVE
        M   +  V F  D++ VEA+ + + L +V D G    ++E DS  VV+LI  K  S  E+G LI +++E+    +         R  N VAH  +++A+ 
Subjt:  MLTFLKVVSFVVDVDLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRG-HFSLCRRELNRVAHEAARVAVE

Query:  DGMEGVWLEEYPSSLATVVRRE
        + ME VWLEE P+ +A  V ++
Subjt:  DGMEGVWLEEYPSSLATVVRRE

XP_010681975.1 PREDICTED: uncharacterized protein LOC104896887 [Beta vulgaris subsp. vulgaris]1.1e-1040.19Show/hide
Query:  VDVDLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRGHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYP
        +DV L EA+ +R  L +  ++GF +LV+EMD+ TV S ++ +K  AS LG ++ +I  +A Q     FS  +RE N VAH  A+++ +     VWLEEYP
Subjt:  VDVDLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRGHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYP

Query:  SSLATVV
        S +   V
Subjt:  SSLATVV

XP_021739472.1 uncharacterized protein LOC110705848 [Chenopodium quinoa]6.4e-0834.91Show/hide
Query:  DVDLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRGHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPS
        DVD+VEAM MR +L +  +SGFL + +E D+  +   + ++K   +  GL+ ++I ++A       F+  +R  N+VAH  A+++ +     VWLEEYP 
Subjt:  DVDLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRGHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPS

Query:  SLATVV
         +  VV
Subjt:  SLATVV

XP_021744201.1 uncharacterized protein LOC110710236 [Chenopodium quinoa]5.8e-0936.79Show/hide
Query:  DVDLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRGHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPS
        DVD+ EA+ MR +L +  DSGF N+ +E DS  + + + ++ S A+  G +I +I +++      +FS  +R  NRVAH  A++        VW++E PS
Subjt:  DVDLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRGHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPS

Query:  SLATVV
        S+A VV
Subjt:  SLATVV

XP_021748542.1 uncharacterized protein LOC110714345 [Chenopodium quinoa]1.7e-0836.54Show/hide
Query:  DLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRGHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPSSL
        D+ EA+ MR +LC+  +SGF  + VE D   + S + +  +  +E G ++ +I  IA   Q   F+  +R  NRVAHE A++A+      VWLEE P  +
Subjt:  DLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRGHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPSSL

Query:  ATVV
        A  V
Subjt:  ATVV

TrEMBL top hitse value%identityAlignment
A0A2K2D3A0 RNase H domain-containing protein1.2e-0735.09Show/hide
Query:  MLTFLKVVSFVVDVDLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRGHFSLCRRELNRVAHEAARVAVED
        M+   +V   + D  +VEA+ +RD+ C+  +  F  +++E D A +V L R + S  S +G +++EI E +  F        RRE N VAHE AR AV +
Subjt:  MLTFLKVVSFVVDVDLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRGHFSLCRRELNRVAHEAARVAVED

Query:  GMEGVWLEEYPSSL
        G+   W+   PS L
Subjt:  GMEGVWLEEYPSSL

A0A2N9GJV1 Uncharacterized protein2.4e-0838.39Show/hide
Query:  VVDVDLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRGHFSLCRRELNRVAHEAARVAVEDGMEG-VWLEE
        V  VD VEA+  R +L + WD G +N+ VE DS  V+S +++K+   +  G +I +I+ +A  FQR  +   RRE N  AH  AR  V+   +  VWLE+
Subjt:  VVDVDLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRGHFSLCRRELNRVAHEAARVAVEDGMEG-VWLEE

Query:  YPSSLATVVRRE
         PS L  V++ +
Subjt:  YPSSLATVVRRE

A0A803LHG6 Uncharacterized protein5.7e-1035.45Show/hide
Query:  DVDLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRGHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPS
        DVD+VEAM MR +L +  +SGF+ L +E D+  + S +++ K   +  G+++++I  +A       F   +RE N+VAH  A+++       VWLEEYPS
Subjt:  DVDLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRGHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPS

Query:  SLATVVRRES
         +  +V  +S
Subjt:  SLATVVRRES

A0A803LYX2 Uncharacterized protein2.8e-0936.79Show/hide
Query:  DVDLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRGHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPS
        DVD+ EA+ MR +L +  DSGF N+ +E DS  + + + ++ S A+  G +I +I +++      +FS  +R  NRVAH  A++        VW++E PS
Subjt:  DVDLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRGHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEYPS

Query:  SLATVV
        S+A VV
Subjt:  SLATVV

V4UMR3 RNase H domain-containing protein (Fragment)1.8e-0833.61Show/hide
Query:  MLTFLKVVSFVVDVDLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRG-HFSLCRRELNRVAHEAARVAVE
        M   +  V F  D++ VEA+ + + L +V D G    ++E DS  VV+LI  K  S  E+G LI +++E+    +         R  N VAH  +++A+ 
Subjt:  MLTFLKVVSFVVDVDLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRG-HFSLCRRELNRVAHEAARVAVE

Query:  DGMEGVWLEEYPSSLATVVRRE
        + ME VWLEE P+ +A  V ++
Subjt:  DGMEGVWLEEYPSSLATVVRRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.3e-0534.18Show/hide
Query:  EAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRGHFSLCRRELNRVAHEAARV
        E   +  +L   W  G+L +++E D  T+ +L+    SS + L  L+++IR  A +F    FS  RR  N+VAHE A++
Subjt:  EAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRGHFSLCRRELNRVAHEAARV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTACCTTTCTCAAAGTGGTGTCGTTTGTTGTTGATGTGGACCTTGTCGAAGCCATGGTTATGCGTGATAGCTTGTGTGTGGTGTGGGACAGTGGCTTCTTGAATCT
TGTAGTAGAGATGGACTCGGCGACGGTGGTGAGTCTGATTAGAGAGAAGAAATCGAGTGCATCGGAGCTTGGCTTGCTGATTGAGGAGATTCGTGAAATCGCGGGCCAGT
TTCAACGGGGCCACTTCTCCTTGTGCCGTCGGGAGCTGAATAGGGTGGCGCACGAGGCGGCACGAGTGGCGGTAGAGGACGGAATGGAGGGGGTGTGGCTGGAGGAGTAC
CCATCATCTCTAGCAACTGTTGTCCGAAGGGAGAGTGTTTTCGAAGAGGCTCCTAGAGTGAATGTAAATGGGCTTGCCGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTACCTTTCTCAAAGTGGTGTCGTTTGTTGTTGATGTGGACCTTGTCGAAGCCATGGTTATGCGTGATAGCTTGTGTGTGGTGTGGGACAGTGGCTTCTTGAATCT
TGTAGTAGAGATGGACTCGGCGACGGTGGTGAGTCTGATTAGAGAGAAGAAATCGAGTGCATCGGAGCTTGGCTTGCTGATTGAGGAGATTCGTGAAATCGCGGGCCAGT
TTCAACGGGGCCACTTCTCCTTGTGCCGTCGGGAGCTGAATAGGGTGGCGCACGAGGCGGCACGAGTGGCGGTAGAGGACGGAATGGAGGGGGTGTGGCTGGAGGAGTAC
CCATCATCTCTAGCAACTGTTGTCCGAAGGGAGAGTGTTTTCGAAGAGGCTCCTAGAGTGAATGTAAATGGGCTTGCCGTTTAG
Protein sequenceShow/hide protein sequence
MLTFLKVVSFVVDVDLVEAMVMRDSLCVVWDSGFLNLVVEMDSATVVSLIREKKSSASELGLLIEEIREIAGQFQRGHFSLCRRELNRVAHEAARVAVEDGMEGVWLEEY
PSSLATVVRRESVFEEAPRVNVNGLAV