CuGenDBv2

Gene ID	Lcy04g020030
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	chaperonin-like RBCX protein 1, chloroplastic
Genome location	Chr04:51654772..51655953
RNA-Seq Expression	Lcy04g020030
Synteny	Lcy04g020030
Gene Ontology terms	GO:0006270 - DNA replication initiation (biological process) GO:0009409 - response to cold (biological process) GO:0009414 - response to water deprivation (biological process) GO:0009651 - response to salt stress (biological process) GO:0015977 - carbon fixation (biological process) GO:0015979 - photosynthesis (biological process) GO:0110102 - chloroplast ribulose bisphosphate carboxylase complex assembly (biological process) GO:0033314 - mitotic DNA replication checkpoint (biological process) GO:0061077 - chaperone-mediated protein folding (biological process) GO:0005664 - nuclear origin of replication recognition complex (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0044183 - protein folding chaperone (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0003688 - DNA replication origin binding (molecular function)
InterPro domains	IPR038052 - Chaperonin-like RbcX superfamily IPR003435 - Chaperonin-like RbcX

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004134778.1 chaperonin-like RBCX protein 1, chloroplastic [Cucumis sativus]

1.7e-74

84.09

Show/hide

Query:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH
        MESSARILSPTQFPSLF LPN NR N+ PV P KP+A K MRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLESYN EAY ELMEFLDRH
Subjt:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK
        SLNDGDKFLASLMRESSRHK+L    +  + VRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTEK
Subjt:  SLNDGDKFLASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

XP_008440039.1 PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo]

9.3e-76

85.23

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Query:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH
        MESSARILSPTQFPS+F LPN NR N+ PV P KP+ASKSMRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLESYN EAY ELMEFLDRH
Subjt:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK
        SLNDGDKFLASLMRESSRHKSL    +  + VRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTEK
Subjt:  SLNDGDKFLASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

XP_023003335.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita maxima]

7.1e-76

85.8

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Query:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH
        MES ARILSPT FPSLFPLPN NRSN +PVWPKKP+ASKS+RLHC+KMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYN EA+TELMEFLDRH
Subjt:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK
        SLNDGDKFL++LMRESSRHKSL    +  + VRSAYCKNDFEWDNLKRLA KMV ESNTRLMREYVTETSP D EK
Subjt:  SLNDGDKFLASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

XP_023518339.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita pepo subsp. pepo]

5.1e-74

83.52

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Query:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH
        MES ARILSPT FPS+FPLPN NR N +PVWP+KP+ASKS+RLHC+KMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYN EA+ ELMEFLDRH
Subjt:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK
        SLNDGDKFL++LMRESSRHKSL    +  + VRSAYCKNDFEWDNLKRLA KMV ESNTRLMREYVTETSP D EK
Subjt:  SLNDGDKFLASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

XP_038881664.1 chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida]

4.0e-79

88.07

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Query:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH
        ME SARILS TQFPSLFPLPN NRSN+ PVWPKKPKA+KSMRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLESYN EAY ELMEFLDRH
Subjt:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK
        SLNDGDKFLASLMRESSRHKSL    +  + VRSAYCKNDFEWDNLKRLAFKMV ESNTRLMREYVTETSPSDTEK
Subjt:  SLNDGDKFLASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KMZ4 Uncharacterized protein

8.5e-75

84.09

Show/hide

Query:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH
        MESSARILSPTQFPSLF LPN NR N+ PV P KP+A K MRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLESYN EAY ELMEFLDRH
Subjt:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK
        SLNDGDKFLASLMRESSRHK+L    +  + VRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTEK
Subjt:  SLNDGDKFLASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

A0A1S3B054 uncharacterized protein LOC103484635

4.5e-76

85.23

Show/hide

Query:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH
        MESSARILSPTQFPS+F LPN NR N+ PV P KP+ASKSMRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLESYN EAY ELMEFLDRH
Subjt:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK
        SLNDGDKFLASLMRESSRHKSL    +  + VRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTEK
Subjt:  SLNDGDKFLASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

A0A5D3CNU4 Chaperonin-like RBCX protein 1

4.5e-76

85.23

Show/hide

Query:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH
        MESSARILSPTQFPS+F LPN NR N+ PV P KP+ASKSMRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLESYN EAY ELMEFLDRH
Subjt:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK
        SLNDGDKFLASLMRESSRHKSL    +  + VRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTEK
Subjt:  SLNDGDKFLASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

A0A6J1EFL9 chaperonin-like RBCX protein 1, chloroplastic

5.5e-74

84.09

Show/hide

Query:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH
        MES ARILSPT FPSLFP PN NRSN +PVWPKK +ASKS+RLHC+KMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYN EA+ ELMEFLDRH
Subjt:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK
        SLNDGDKFL++LMRESSRHKSL    +  + VRSAYCKNDFEWDNLKRLA KMV ESNTRLMREYVTETSP D EK
Subjt:  SLNDGDKFLASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

A0A6J1KRH1 chaperonin-like RBCX protein 1, chloroplastic

3.4e-76

85.8

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Query:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH
        MES ARILSPT FPSLFPLPN NRSN +PVWPKKP+ASKS+RLHC+KMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYN EA+TELMEFLDRH
Subjt:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRH

Query:  SLNDGDKFLASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK
        SLNDGDKFL++LMRESSRHKSL    +  + VRSAYCKNDFEWDNLKRLA KMV ESNTRLMREYVTETSP D EK
Subjt:  SLNDGDKFLASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

SwissProt top hits

e value

%identity

Alignment

Q94AU9 Chaperonin-like RBCX protein 1, chloroplastic

2.0e-49

64.67

Show/hide

Query:  LPNSNRSNLSPVWPKKPKAS----------KSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRHSLNDGDKF
        L +S  S L+P + K+P  S          K  R+  NKMYVPGFGEASPEAKAAK+LH+FFTYVAVRIV+AQLESYN EAY EL EFLD +S++DGDKF
Subjt:  LPNSNRSNLSPVWPKKPKAS----------KSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRHSLNDGDKF

Query:  LASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE
         A+LMR SSRH +L    +  + VRSAYCKNDFEWDN+KRLAFK VD+SNTRLMREYV ETS  +T+
Subjt:  LASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE

Arabidopsis top hits

e value

%identity

Alignment

AT4G04330.1 Chaperonin-like RbcX protein

1.4e-50

64.67

Show/hide

Query:  LPNSNRSNLSPVWPKKPKAS----------KSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRHSLNDGDKF
        L +S  S L+P + K+P  S          K  R+  NKMYVPGFGEASPEAKAAK+LH+FFTYVAVRIV+AQLESYN EAY EL EFLD +S++DGDKF
Subjt:  LPNSNRSNLSPVWPKKPKAS----------KSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRHSLNDGDKF

Query:  LASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE
         A+LMR SSRH +L    +  + VRSAYCKNDFEWDN+KRLAFK VD+SNTRLMREYV ETS  +T+
Subjt:  LASLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAATCATCTGCAAGGATTCTTTCCCCTACTCAATTCCCTTCTCTTTTCCCACTACCCAATTCGAACAGAAGCAATTTGTCTCCAGTTTGGCCAAAAAAGCCGAAAGC
CTCCAAGTCTATGCGCTTGCATTGCAATAAGATGTATGTCCCCGGGTTTGGAGAAGCGTCACCTGAAGCAAAGGCAGCCAAAAATCTGCACAATTTCTTCACGTATGTTG
CTGTTAGGATCGTGACTGCGCAGCTTGAGAGCTATAATCTAGAGGCGTACACAGAGTTAATGGAGTTTCTTGATAGACATTCACTGAATGATGGGGACAAGTTCCTGGCC
AGTTTGATGCGGGAATCGTCGAGGCATAAGAGTCTTGGTAAAACCCAAATCTATTCTATTTCTGTTCGATCTGCATACTGCAAAAACGATTTCGAATGGGACAACCTCAA
GCGATTAGCTTTCAAAATGGTTGATGAATCCAACACGAGACTGATGAGGGAATATGTCACAGAGACAAGTCCATCGGATACTGAGAAGTGA

mRNA sequence

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Protein sequence

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MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNLEAYTELMEFLDRHSLNDGDKFLA
SLMRESSRHKSLGKTQIYSISVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

Lcy04g020030 (gene) of Sponge gourd (P93075) v1 genome