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Lcy04g021090 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy04g021090
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr04:52456023..52456673
RNA-Seq ExpressionLcy04g021090
SyntenyLcy04g021090
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019172068.1 PREDICTED: uncharacterized protein LOC109167502 [Ipomoea nil]2.1e-1329.19Show/hide
Query:  WLQ--LSSCQENNLDLIYVGAWAIWNDRNHVLHNRPISSIEARCVWIHDYLAEFSKANGVSVSYNLSTVAFQYLIDKGEETI-MHTDAAFDEPTRRSGFG
        WL+   SS  + ++ LI    W +W  RN  L N  I +    C+ + +++ E+ K N  +VS   ST +           + ++ DAA D   +R GFG
Subjt:  WLQ--LSSCQENNLDLIYVGAWAIWNDRNHVLHNRPISSIEARCVWIHDYLAEFSKANGVSVSYNLSTVAFQYLIDKGEETI-MHTDAAFDEPTRRSGFG

Query:  IVLRDRQGVLKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFCHVRQHYNIV
         +LRD  G L A   LP      P  AEA AV E L+++R   ++   + +D + +V ++  S   +  S   ++ D++S  + F+ + F   ++  N V
Subjt:  IVLRDRQGVLKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFCHVRQHYNIV

Query:  AHKLAHVGL
        AH LA   L
Subjt:  AHKLAHVGL

XP_023888364.1 uncharacterized protein LOC112000452 [Quercus suber]4.7e-1328.77Show/hide
Query:  MDIKDRWLQLSSCQENNLDLIYVGAWAIWNDRNHVLHN--RPISSIEARCVWIHDYLAEFSKANGVSVSYNLSTVAFQ--YLIDKGEETIMHTDAAFDEP
        M++  + + +  C EN   L+   AW +W +RN + HN  + ++++E  C     +L EF +AN  ++ + LS  A Q  +L    +   ++ D A  + 
Subjt:  MDIKDRWLQLSSCQENNLDLIYVGAWAIWNDRNHVLHN--RPISSIEARCVWIHDYLAEFSKANGVSVSYNLSTVAFQ--YLIDKGEETIMHTDAAFDEP

Query:  TRRSGFGIVLRDRQGVLKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFCHV
           SG G+++RD   ++ A +S        PL  EA A   GL+F +++ ++   +  DS+++V+A+QG  P   +S++ +I  IQS+      + F HV
Subjt:  TRRSGFGIVLRDRQGVLKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFCHV

Query:  RQHYNIVAHKLA
         ++ N  AH LA
Subjt:  RQHYNIVAHKLA

XP_030479177.1 uncharacterized protein LOC115696415 [Cannabis sativa]4.7e-1325.58Show/hide
Query:  MDIKDRWLQL-SSCQENNLDLIYVGAWAIWNDRNHVLHNRPISSIEARCVWIHDYLAEF--SKANGVSVSYNLSTVAFQYLIDKGEETIMHTDAAFDEPT
        +DI + +L L ++  +N++ +++   WA+WN RN++++N+     +    W  +Y  +F  ++   V+ S   S  A    I       + TDAA D   
Subjt:  MDIKDRWLQL-SSCQENNLDLIYVGAWAIWNDRNHVLHNRPISSIEARCVWIHDYLAEF--SKANGVSVSYNLSTVAFQYLIDKGEETIMHTDAAFDEPT

Query:  RRSGFGIVLRDRQGVLKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFCHVR
        R+   G+V+ D    +KA  S P      P  AEA A+ + +Q+ + + + +  +++D  S+V  +      ++  +  V+ +IQ+ +S    +   +V 
Subjt:  RRSGFGIVLRDRQGVLKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFCHVR

Query:  QHYNIVAHKLAHVGL
        +  N++AHKLA  GL
Subjt:  QHYNIVAHKLAHVGL

XP_030495037.1 uncharacterized protein LOC115710826 [Cannabis sativa]1.2e-1331.34Show/hide
Query:  MDIKDRWLQ-LSSCQENNLDLIYVGAWAIWNDRNHVLH-NRPISSIEARCVWIHDYLAEFSKANGVSVSYNLSTVAFQYLIDKGEET---IMHTDAAFDE
        +DIK+  +   S   + +L L+    WAIWN RN  L  N  +SS++    WI+ YL++++ A       + S +   +   K        ++TDAA   
Subjt:  MDIKDRWLQ-LSSCQENNLDLIYVGAWAIWNDRNHVLH-NRPISSIEARCVWIHDYLAEFSKANGVSVSYNLSTVAFQYLIDKGEET---IMHTDAAFDE

Query:  PTRRSGFGIVLRDRQGVLKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFCH
           + GFG V+ D +G + A LS+P+     PL AEA A+ E L +   + + IA + +DS  LV  + G    D  ++  V+ DI +++S F  ++  H
Subjt:  PTRRSGFGIVLRDRQGVLKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFCH

Query:  VRQHYNIVAHKLAHVGL
        V + YN  AH LA   L
Subjt:  VRQHYNIVAHKLAHVGL

XP_040960280.1 uncharacterized protein LOC121223215 [Gossypium hirsutum]1.1e-1434.97Show/hide
Query:  WAIWNDRNHVLHNRPISSIEARCVWIHDYLAEFSKANGVSVSYNLSTVAFQYLIDKGEETIMHTDAAFDEPTRRSGFGIVLRDRQGVLKARLSLPSQICT
        WAIWN RN ++H R I S       I  YLAE            L TV  Q   +      +H DAAFD    RS  G+++RD +G L+A  +      +
Subjt:  WAIWNDRNHVLHNRPISSIEARCVWIHDYLAEFSKANGVSVSYNLSTVAFQYLIDKGEETIMHTDAAFDEPTRRSGFGIVLRDRQGVLKARLSLPSQICT

Query:  TPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFCHVRQHYNIVAHKLA
        +P  AEA A L+ ++    + +   T+M DS +++K  Q  G +D   I +VI DIQ   S F  I F  +++  N  AHKLA
Subjt:  TPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFCHVRQHYNIVAHKLA

TrEMBL top hitse value%identityAlignment
A0A803NM27 Uncharacterized protein9.9e-1730.37Show/hide
Query:  MDIKDRWLQLSSC-QENNLDLIYVGAWAIWNDRNHVLHNRPISSIEARCVWIHDYLAEFSKANGVSVSYNLS-----TVAFQYLIDKGEETIMHTDAAFD
        M I+D   Q+S C  ++ L++I+   W+IW+DRN+VLH +              +L+ F  A  +S+   L+     T    +         ++ DAAFD
Subjt:  MDIKDRWLQLSSC-QENNLDLIYVGAWAIWNDRNHVLHNRPISSIEARCVWIHDYLAEFSKANGVSVSYNLS-----TVAFQYLIDKGEETIMHTDAAFD

Query:  EPTRRSGFGIVLRDRQGVLKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFC
        +  +R GFG ++RD  G +KA +S P   C  P   EA  +   L++ R+L  ++  V +DS+ LV A++ S      S   +I D+Q+ +S    +   
Subjt:  EPTRRSGFGIVLRDRQGVLKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFC

Query:  HVRQHYNIVAHKLA
        HV +  N  AH LA
Subjt:  HVRQHYNIVAHKLA

A0A803P2U6 Uncharacterized protein3.0e-1328Show/hide
Query:  ENNLDLIYVGAWAIWNDRNHVLHNRPISSIEARCVWIHDYLAEFSKANG--VSVSYNLSTVAFQYLIDKGEETIMHTDAAFDEPTRRSGFGIVLRDRQGV
        +N++ +++   WA+WN RN+++HN+   S +    W  +Y  +F  A    VS S +    A    I       + TDAA D   ++   G+V+ D    
Subjt:  ENNLDLIYVGAWAIWNDRNHVLHNRPISSIEARCVWIHDYLAEFSKANG--VSVSYNLSTVAFQYLIDKGEETIMHTDAAFDEPTRRSGFGIVLRDRQGV

Query:  LKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFCHVRQHYNIVAHKLAHVGL
        +KA  S P      P  AEA AV + +Q+ + + + +  +++D  S+V  +  S   ++  +  V+ +IQ+ +S    +T  +V +  N +AHKLA  GL
Subjt:  LKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFCHVRQHYNIVAHKLAHVGL

A0A803P4P2 Uncharacterized protein6.0e-1431.34Show/hide
Query:  MDIKDRWLQ-LSSCQENNLDLIYVGAWAIWNDRNHVLH-NRPISSIEARCVWIHDYLAEFSKANGVSVSYNLSTVAFQYLIDKGEET---IMHTDAAFDE
        +DIK+  +   S   + +L L+    WAIWN RN  L  N  +SS++    WI+ YL++++ A       + S +   +   K        ++TDAA   
Subjt:  MDIKDRWLQ-LSSCQENNLDLIYVGAWAIWNDRNHVLH-NRPISSIEARCVWIHDYLAEFSKANGVSVSYNLSTVAFQYLIDKGEET---IMHTDAAFDE

Query:  PTRRSGFGIVLRDRQGVLKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFCH
           + GFG V+ D +G + A LS+P+     PL AEA A+ E L +   + + IA + +DS  LV  + G    D  ++  V+ DI +++S F  ++  H
Subjt:  PTRRSGFGIVLRDRQGVLKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFCH

Query:  VRQHYNIVAHKLAHVGL
        V + YN  AH LA   L
Subjt:  VRQHYNIVAHKLAHVGL

A0A803Q8J4 Uncharacterized protein1.6e-1427.98Show/hide
Query:  MDIKDRWLQLS-SCQENNLDLIYVGAWAIWNDRNHVLHNRPISSIEARCVWIHDYLAEFSKANGVSVSYNLSTVAFQYLIDKGEE-----TIMHTDAAFD
        M+I+D   Q+S +  ++ L+ I+   W+IW+DRN+V+H +             ++L  +     +S+   LS  A   +             ++ DAAFD
Subjt:  MDIKDRWLQLS-SCQENNLDLIYVGAWAIWNDRNHVLHNRPISSIEARCVWIHDYLAEFSKANGVSVSYNLSTVAFQYLIDKGEE-----TIMHTDAAFD

Query:  EPTRRSGFGIVLRDRQGVLKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFC
        E   + GFG ++RD  G +KA +S P   C  P   EA  +   L++ R+L  ++  V +DS+ L  A++ +   +  S   +I D+Q+ +S    +   
Subjt:  EPTRRSGFGIVLRDRQGVLKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFC

Query:  HVRQHYNIVAHKLAHVGL
        HV +  N  AH LA   L
Subjt:  HVRQHYNIVAHKLAHVGL

A0A803QAH8 Uncharacterized protein4.4e-1729.91Show/hide
Query:  MDIKDRWLQLSSC-QENNLDLIYVGAWAIWNDRNHVLHNRPISSIEARCVWIHDYLAEFSKANGVSVSYNLS-----TVAFQYLIDKGEETIMHTDAAFD
        M I+D   Q+S C  ++ L++I+   W+IW+DRN+V+H +              +L+ F  A+ +S+   L+     T    +         ++ DAAFD
Subjt:  MDIKDRWLQLSSC-QENNLDLIYVGAWAIWNDRNHVLHNRPISSIEARCVWIHDYLAEFSKANGVSVSYNLS-----TVAFQYLIDKGEETIMHTDAAFD

Query:  EPTRRSGFGIVLRDRQGVLKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFC
        +  +R GFG ++RD  G +KA +S P   C  P   EA  +   L++ R+L  ++  V +DS+ LV A++ S      S   +I D+Q+ +S   ++   
Subjt:  EPTRRSGFGIVLRDRQGVLKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFC

Query:  HVRQHYNIVAHKLA
        HV +  N  AH LA
Subjt:  HVRQHYNIVAHKLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.5e-0627.69Show/hide
Query:  EETIMHTDAAFDEPTRRSGFGIVLRDRQGVLKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQ
        +   + TDAA+   T+  GFG V+R+   +        ++    PL AEA A+   LQ+ + + +   ++ SDS  L+ A+    P        +I DI 
Subjt:  EETIMHTDAAFDEPTRRSGFGIVLRDRQGVLKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQ

Query:  STMSSFNMITFCHVRQHYNIVAHKLAHVGL
        +    F  ++F  V +  N VA +LA   L
Subjt:  STMSSFNMITFCHVRQHYNIVAHKLAHVGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATAAAAGACCGATGGCTCCAACTTAGTAGCTGTCAGGAGAACAACCTGGATCTCATATATGTTGGTGCTTGGGCGATTTGGAATGATAGAAATCATGTG
TTACATAATCGTCCTATATCGAGCATTGAAGCCAGATGTGTGTGGATACATGATTATCTAGCGGAGTTTAGCAAGGCGAACGGGGTTAGTGTTTCTTATAACTTG
TCAACAGTTGCATTCCAATACCTGATTGACAAAGGCGAGGAGACAATTATGCATACTGATGCTGCCTTTGATGAGCCAACTCGGAGATCTGGTTTTGGGATCGTC
CTTCGAGATAGGCAGGGTGTATTGAAGGCGAGATTATCCTTGCCTTCCCAAATTTGCACTACCCCATTATGTGCTGAAGCGGGAGCAGTGCTCGAAGGGCTTCAG
TTTGTAAGGAAATTAGAAGTGGAAATAGCGACGGTAATGTCTGATTCTATATCATTGGTTAAAGCCGTTCAGGGGAGTGGTCCAGTTGATCATTTGAGCATTATA
TCCGTTATATGTGATATTCAAAGTACTATGTCTTCCTTCAACATGATTACCTTTTGTCATGTTCGTCAGCATTATAACATAGTGGCCCATAAGTTGGCCCACGTA
GGTCTTTATTTTGCTCCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATATAAAAGACCGATGGCTCCAACTTAGTAGCTGTCAGGAGAACAACCTGGATCTCATATATGTTGGTGCTTGGGCGATTTGGAATGATAGAAATCATGTG
TTACATAATCGTCCTATATCGAGCATTGAAGCCAGATGTGTGTGGATACATGATTATCTAGCGGAGTTTAGCAAGGCGAACGGGGTTAGTGTTTCTTATAACTTG
TCAACAGTTGCATTCCAATACCTGATTGACAAAGGCGAGGAGACAATTATGCATACTGATGCTGCCTTTGATGAGCCAACTCGGAGATCTGGTTTTGGGATCGTC
CTTCGAGATAGGCAGGGTGTATTGAAGGCGAGATTATCCTTGCCTTCCCAAATTTGCACTACCCCATTATGTGCTGAAGCGGGAGCAGTGCTCGAAGGGCTTCAG
TTTGTAAGGAAATTAGAAGTGGAAATAGCGACGGTAATGTCTGATTCTATATCATTGGTTAAAGCCGTTCAGGGGAGTGGTCCAGTTGATCATTTGAGCATTATA
TCCGTTATATGTGATATTCAAAGTACTATGTCTTCCTTCAACATGATTACCTTTTGTCATGTTCGTCAGCATTATAACATAGTGGCCCATAAGTTGGCCCACGTA
GGTCTTTATTTTGCTCCGTAG
Protein sequenceShow/hide protein sequence
MDIKDRWLQLSSCQENNLDLIYVGAWAIWNDRNHVLHNRPISSIEARCVWIHDYLAEFSKANGVSVSYNLSTVAFQYLIDKGEETIMHTDAAFDEPTRRSGFGIV
LRDRQGVLKARLSLPSQICTTPLCAEAGAVLEGLQFVRKLEVEIATVMSDSISLVKAVQGSGPVDHLSIISVICDIQSTMSSFNMITFCHVRQHYNIVAHKLAHV
GLYFAP