; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy04g023630 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy04g023630
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr04:54768318..54769301
RNA-Seq ExpressionLcy04g023630
SyntenyLcy04g023630
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021774242.1 uncharacterized protein LOC110738174 [Chenopodium quinoa]5.0e-1928.04Show/hide
Query:  LSLEEIQTVAVTCWAIWTDRNNSFNEKPIPPQIIRSNWIKKYIPEYLQANNKPSTTSNQSFEIRAHPSNWIPPPEGCWKLNVDVAWISGLPRTGIGVLCK
        L + +++ +   CWA W+ RN    E   P  +   N+  K   E  +          Q  ++ +HP +W  P  GC KLNVD A + G   +G G + +
Subjt:  LSLEEIQTVAVTCWAIWTDRNNSFNEKPIPPQIIRSNWIKKYIPEYLQANNKPSTTSNQSFEIRAHPSNWIPPPEGCWKLNVDVAWISGLPRTGIGVLCK

Query:  DSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVVEEIRDRASSFSEISFSYISSNFNVVAFAIA
        D  G++ G +A      + + + E K I+ G+      G KN+ +ESDCLQ I  + K    ++    +++++    SSF  IS+S++  + N VA  +A
Subjt:  DSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVVEEIRDRASSFSEISFSYISSNFNVVAFAIA

Query:  KWAKSEGRNDVWIH
         +   E    VW++
Subjt:  KWAKSEGRNDVWIH

XP_021808158.1 uncharacterized protein LOC110751913 [Prunus avium]1.4e-1628.18Show/hide
Query:  EEIQTVAVTCWAIWTDRNNSFNEKPIPPQIIRSNWIKKYIPEYLQANNKPSTTSNQSFEIRAHPSNWIPPPEGCWKLNVDVAWISGLPRTGIG-------
        E IQ      W IW  RN +  E      I  ++ +   + EY  A  +     +Q+    +   +W  PP    K+N DVAW + L R G+G       
Subjt:  EEIQTVAVTCWAIWTDRNNSFNEKPIPPQIIRSNWIKKYIPEYLQANNKPSTTSNQSFEIRAHPSNWIPPPEGCWKLNVDVAWISGLPRTGIG-------

Query:  --VLCKDSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVVEEIRDRASSFSEISFSYISSNFNV
          +LC    G L+G+SA         L+ EL AI   L     F   ++ +ESD  + I++++ +  V +++E +V +I+   ++FS++SF +   + N 
Subjt:  --VLCKDSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVVEEIRDRASSFSEISFSYISSNFNV

Query:  VAFAIAKWAKSEGRNDVWIH
        VA  +A +    G N VW H
Subjt:  VAFAIAKWAKSEGRNDVWIH

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]1.0e-1632.94Show/hide
Query:  LSLEEIQTVAVTCWAIWTDRNNSFNEKPIPPQIIRSNWIKKYIPEYLQANNKPSTTSNQSFEIRAHPSNWIPPPEGCWKLNVDVAWISGLPRTGIGVLCK
        L+ ++    A T WAIW DRN+  +   +    +R NWI  Y   Y QA      +  QS  +      W+PP +   K+N D A  S    TG+G++ +
Subjt:  LSLEEIQTVAVTCWAIWTDRNNSFNEKPIPPQIIRSNWIKKYIPEYLQANNKPSTTSNQSFEIRAHPSNWIPPPEGCWKLNVDVAWISGLPRTGIGVLCK

Query:  DSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVV
        D  G L  A +++L M    L  E++ ILE LKL  S     + +ESDC +AI L+  +GD+ +  E ++
Subjt:  DSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVV

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.9e-1832.68Show/hide
Query:  LSLEEIQTVAVTCWAIWTDRNNSFNEKPIPPQIIRSNWIKKYIPEYLQA---NNKPSTTSNQSFEIRAHPSNWIPPPEGCWKLNVDVAWISGLPRTGIGV
        L  +++   A+T W IW DRN+  + K + P   +  W+  ++  + QA   N  P T SN     R     W P      KLN D A       T  G 
Subjt:  LSLEEIQTVAVTCWAIWTDRNNSFNEKPIPPQIIRSNWIKKYIPEYLQA---NNKPSTTSNQSFEIRAHPSNWIPPPEGCWKLNVDVAWISGLPRTGIGV

Query:  LCKDSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVVEEIRDRASSFSEISFSYISSNFNVVAF
        + +DSS SL  A+++ +      L+ E++ ILEGLK   +    ++ +ESD L AI LI  E   R + +  V EI+     F+ ISFS+ S   N  A 
Subjt:  LCKDSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVVEEIRDRASSFSEISFSYISSNFNVVAF

Query:  AIAKW
         +AKW
Subjt:  AIAKW

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]2.2e-1932.34Show/hide
Query:  LSLEEIQTVAVTCWAIWTDRNNSFNEKPIPPQIIRSNWIKKYIPEYLQANNKPSTTSNQSFEIRAHPSNWIPPPEGCWKLNVDVAWISGLPRTGIGVLCK
        LS  E++   +TCWA+W DR+   N+K IP  +I+  WI KY  E     +      N         + W PP  G  K+N D A       +G+GVL +
Subjt:  LSLEEIQTVAVTCWAIWTDRNNSFNEKPIPPQIIRSNWIKKYIPEYLQANNKPSTTSNQSFEIRAHPSNWIPPPEGCWKLNVDVAWISGLPRTGIGVLCK

Query:  DSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVVEEIRDRASSFSEISFSYISSNFNVVAFAIA
        + +  + GA  V   M    L+ ++ AI EGL L    G   + +E+D L+A+NLI  +   + E  + VE+IR  A  F EI F ++    N VA+ + 
Subjt:  DSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVVEEIRDRASSFSEISFSYISSNFNVVAFAIA

Query:  K
        +
Subjt:  K

TrEMBL top hitse value%identityAlignment
A0A1R3FZL6 Reverse transcriptase1.1e-1632.68Show/hide
Query:  ALSLEEIQTVAVTCWAIWTDRNNSFNE-KPIPPQIIRSNWIKKYIPEYLQANNKPSTTSNQSFEIRAHPS---NWIPPPEGCWKLNVDVAWISGLPRTGI
        A S+ +I  V VT W IW +RN +  E   + P  +  ++   YI E L++NN+      + ++I   P+   NWIPPP G +K+N + A+ SG    G+
Subjt:  ALSLEEIQTVAVTCWAIWTDRNNSFNE-KPIPPQIIRSNWIKKYIPEYLQANNKPSTTSNQSFEIRAHPS---NWIPPPEGCWKLNVDVAWISGLPRTGI

Query:  GVLCKDSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVVEEIRDRASSFSEISFSYISSNFNVV
        GV+ +DS   +    +  L+    SL   + AIL   +L    G      ESD L A+NLI+K G V  E   +++EIRD A+ F+  +  ++    N +
Subjt:  GVLCKDSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVVEEIRDRASSFSEISFSYISSNFNVV

Query:  AFAIA
        A  +A
Subjt:  AFAIA

A0A1R3H2R0 Reverse transcriptase1.1e-1629.41Show/hide
Query:  ALSLEEIQTVAVTCWAIWTDRNNSFNEKPIPPQIIRSNWIKKYIPEYLQANNKPSTTSNQSFEIRAHPSNWIPPPEGCWKLNVDVAWISGLPRTGIGVLC
        A  L  +  V +T W +W +RN  ++++    +   S  I+ ++ +  +   +   T     EI      W PP EG  K+NVD A+++     G+  + 
Subjt:  ALSLEEIQTVAVTCWAIWTDRNNSFNEKPIPPQIIRSNWIKKYIPEYLQANNKPSTTSNQSFEIRAHPSNWIPPPEGCWKLNVDVAWISGLPRTGIGVLC

Query:  KDSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVVEEIRDRASSFSEISFSYISSNFNVVAFAI
        +DS+G +  + A        SL  E+  +  G+ +    G  +  +ESDCL  +  ++K+G V  E + V+EEIRD AS F  ISF ++    NV A ++
Subjt:  KDSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVVEEIRDRASSFSEISFSYISSNFNVVAFAI

Query:  AKWA
        AK A
Subjt:  AKWA

A0A6J1DX30 uncharacterized protein LOC1110248749.2e-1932.68Show/hide
Query:  LSLEEIQTVAVTCWAIWTDRNNSFNEKPIPPQIIRSNWIKKYIPEYLQA---NNKPSTTSNQSFEIRAHPSNWIPPPEGCWKLNVDVAWISGLPRTGIGV
        L  +++   A+T W IW DRN+  + K + P   +  W+  ++  + QA   N  P T SN     R     W P      KLN D A       T  G 
Subjt:  LSLEEIQTVAVTCWAIWTDRNNSFNEKPIPPQIIRSNWIKKYIPEYLQA---NNKPSTTSNQSFEIRAHPSNWIPPPEGCWKLNVDVAWISGLPRTGIGV

Query:  LCKDSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVVEEIRDRASSFSEISFSYISSNFNVVAF
        + +DSS SL  A+++ +      L+ E++ ILEGLK   +    ++ +ESD L AI LI  E   R + +  V EI+     F+ ISFS+ S   N  A 
Subjt:  LCKDSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVVEEIRDRASSFSEISFSYISSNFNVVAF

Query:  AIAKW
         +AKW
Subjt:  AIAKW

A0A6J1DZK3 uncharacterized protein LOC1110249681.1e-1932.34Show/hide
Query:  LSLEEIQTVAVTCWAIWTDRNNSFNEKPIPPQIIRSNWIKKYIPEYLQANNKPSTTSNQSFEIRAHPSNWIPPPEGCWKLNVDVAWISGLPRTGIGVLCK
        LS  E++   +TCWA+W DR+   N+K IP  +I+  WI KY  E     +      N         + W PP  G  K+N D A       +G+GVL +
Subjt:  LSLEEIQTVAVTCWAIWTDRNNSFNEKPIPPQIIRSNWIKKYIPEYLQANNKPSTTSNQSFEIRAHPSNWIPPPEGCWKLNVDVAWISGLPRTGIGVLCK

Query:  DSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVVEEIRDRASSFSEISFSYISSNFNVVAFAIA
        + +  + GA  V   M    L+ ++ AI EGL L    G   + +E+D L+A+NLI  +   + E  + VE+IR  A  F EI F ++    N VA+ + 
Subjt:  DSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVVEEIRDRASSFSEISFSYISSNFNVVAFAIA

Query:  K
        +
Subjt:  K

A0A6P5S2T0 uncharacterized protein LOC1107519136.6e-1728.18Show/hide
Query:  EEIQTVAVTCWAIWTDRNNSFNEKPIPPQIIRSNWIKKYIPEYLQANNKPSTTSNQSFEIRAHPSNWIPPPEGCWKLNVDVAWISGLPRTGIG-------
        E IQ      W IW  RN +  E      I  ++ +   + EY  A  +     +Q+    +   +W  PP    K+N DVAW + L R G+G       
Subjt:  EEIQTVAVTCWAIWTDRNNSFNEKPIPPQIIRSNWIKKYIPEYLQANNKPSTTSNQSFEIRAHPSNWIPPPEGCWKLNVDVAWISGLPRTGIG-------

Query:  --VLCKDSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVVEEIRDRASSFSEISFSYISSNFNV
          +LC    G L+G+SA         L+ EL AI   L     F   ++ +ESD  + I++++ +  V +++E +V +I+   ++FS++SF +   + N 
Subjt:  --VLCKDSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVVEEIRDRASSFSEISFSYISSNFNV

Query:  VAFAIAKWAKSEGRNDVWIH
        VA  +A +    G N VW H
Subjt:  VAFAIAKWAKSEGRNDVWIH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.6e-0727.74Show/hide
Query:  HPSNWIPPPEGCWKLNVDVAW-ISGLPRTGIGVLCKDSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRN
        H + W  PP+   K N D  + +  L  T   ++ ++  G  +   ++ LD     L  E KA+L  L+     G   + +E DC    NL+S      N
Subjt:  HPSNWIPPPEGCWKLNVDVAW-ISGLPRTGIGVLCKDSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRN

Query:  EMETVVEEIRDRASSFSEISFSYISSNFNVVAFAIAK
         +  ++++IR  A  FS + FS++    N VA  +AK
Subjt:  EMETVVEEIRDRASSFSEISFSYISSNFNVVAFAIAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCCCAATTTATGTGTTCCACACGCCAAAATTGGGAATTATTCCCATTCATTGACTCATTTTAGACATGCTAATATATTGGCACTGTCATTGGAAGAGATT
CAGACTGTTGCTGTCACCTGTTGGGCAATTTGGACAGATAGGAACAATTCATTCAATGAAAAACCAATTCCTCCCCAAATTATTCGAAGCAATTGGATTAAAAAG
TACATACCAGAGTACTTACAAGCGAATAACAAACCTTCTACTACTTCAAACCAGAGTTTTGAGATTAGGGCCCATCCATCGAACTGGATTCCGCCGCCGGAGGGT
TGTTGGAAGCTAAATGTTGATGTGGCCTGGATTTCTGGCCTTCCTCGCACTGGTATAGGAGTATTATGCAAGGATTCATCTGGTTCCCTGAAGGGAGCTTCCGCG
GTTTATCTTGACATGGATTTCGTCTCCCTAATGACTGAATTGAAAGCGATCCTGGAAGGCTTGAAGCTGGTCGATTCCTTTGGATGCAAGAATATAACGTTGGAA
TCTGATTGCCTCCAAGCGATCAATTTAATATCAAAGGAAGGGGATGTGAGAAATGAGATGGAAACTGTGGTGGAAGAAATTCGTGATCGAGCTTCGTCCTTCTCT
GAGATTTCATTCTCATATATTTCTAGTAATTTCAATGTTGTAGCATTCGCAATTGCCAAATGGGCTAAGAGTGAAGGGAGAAATGATGTATGGATCCACTGGTTT
TAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTCCCAATTTATGTGTTCCACACGCCAAAATTGGGAATTATTCCCATTCATTGACTCATTTTAGACATGCTAATATATTGGCACTGTCATTGGAAGAGATT
CAGACTGTTGCTGTCACCTGTTGGGCAATTTGGACAGATAGGAACAATTCATTCAATGAAAAACCAATTCCTCCCCAAATTATTCGAAGCAATTGGATTAAAAAG
TACATACCAGAGTACTTACAAGCGAATAACAAACCTTCTACTACTTCAAACCAGAGTTTTGAGATTAGGGCCCATCCATCGAACTGGATTCCGCCGCCGGAGGGT
TGTTGGAAGCTAAATGTTGATGTGGCCTGGATTTCTGGCCTTCCTCGCACTGGTATAGGAGTATTATGCAAGGATTCATCTGGTTCCCTGAAGGGAGCTTCCGCG
GTTTATCTTGACATGGATTTCGTCTCCCTAATGACTGAATTGAAAGCGATCCTGGAAGGCTTGAAGCTGGTCGATTCCTTTGGATGCAAGAATATAACGTTGGAA
TCTGATTGCCTCCAAGCGATCAATTTAATATCAAAGGAAGGGGATGTGAGAAATGAGATGGAAACTGTGGTGGAAGAAATTCGTGATCGAGCTTCGTCCTTCTCT
GAGATTTCATTCTCATATATTTCTAGTAATTTCAATGTTGTAGCATTCGCAATTGCCAAATGGGCTAAGAGTGAAGGGAGAAATGATGTATGGATCCACTGGTTT
TAG
Protein sequenceShow/hide protein sequence
MVPNLCVPHAKIGNYSHSLTHFRHANILALSLEEIQTVAVTCWAIWTDRNNSFNEKPIPPQIIRSNWIKKYIPEYLQANNKPSTTSNQSFEIRAHPSNWIPPPEG
CWKLNVDVAWISGLPRTGIGVLCKDSSGSLKGASAVYLDMDFVSLMTELKAILEGLKLVDSFGCKNITLESDCLQAINLISKEGDVRNEMETVVEEIRDRASSFS
EISFSYISSNFNVVAFAIAKWAKSEGRNDVWIHWF