CuGenDBv2

Gene ID	Lcy05g001040
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DNA-directed RNA polymerase I subunit rpa49-like
Genome location	Chr05:1046532..1051880
RNA-Seq Expression	Lcy05g001040
Synteny	Lcy05g001040
Gene Ontology terms	GO:0001188 - RNA polymerase I preinitiation complex assembly (biological process) GO:0006362 - transcription elongation from RNA polymerase I promoter (biological process) GO:0042790 - nucleolar large rRNA transcription by RNA polymerase I (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR009668 - RNA polymerase I associated factor, A49-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7025877.1 DNA-directed RNA polymerase I subunit rpa49 [Cucurbita argyrosperma subsp. argyrosperma]

1.1e-221

90.87

Show/hide

Query:  MAEDSRSFELEETHYTEPEANSQSPAKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQLV
        MA DS+ F  EETHY EPEANSQ PAKKKKSEKKKKRVPPV  KIQVLSNHPEK PPLVGYFPSG+DP+KD +EE VEEQNSVRA+VYRHK KPNRMQLV
Subjt:  MAEDSRSFELEETHYTEPEANSQSPAKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQLV

Query:  VSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQA
        VSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPE ESP VANDELSVQEKADRMREL+NLYGTK+SIKQA
Subjt:  VSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQA

Query:  KKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKLQ
        KKL SLKQEDDP+TKKDLD KMKNVVVNKEALES+NAQI+RNIPTYNASATTPQEAYPLDKIILKGEW FLEDLYFLLQ E+EISANYPSFVRNRIYKLQ
Subjt:  KKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKLQ

Query:  DVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFT
        D+QDEEEKKKLCCI+SYITHL+KYKDQHSMDGVSS KGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVL LFADEFSSDPSDIA+DLRTSPFT
Subjt:  DVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFT

Query:  LRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR
        LR+H+DNLGCKFIRKNNLSLVTLP+PLQFPELR+KRRR
Subjt:  LRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

XP_022151610.1 DNA-directed RNA polymerase I subunit rpa49 [Momordica charantia]

1.2e-217

89.98

Show/hide

Query:  MAEDSRSFELEETHYTEPEANSQSPAKK-KKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL
        MA D++SFELEETHY EPEANSQSPAKK +KSEKKKKRV  V A IQVLSNHPEKTPPLVGYFPSGF+PHKDADEEAV+EQ S+RARVYR+KNKPNRMQL
Subjt:  MAEDSRSFELEETHYTEPEANSQSPAKK-KKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIA+NMIFRLDPKVRGSDV EKESP V +DELSVQEKADRMRELTNLYGTKRSIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL
        AKKLHSLKQ DD DT+KDLD KMKNVVVNKEALE TNA+IARNIPTYNASATTPQEAYPLDKIIL GEWS+LED+Y LL+ EAEISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL

Query:  QDVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKKKLCCIFSYITHLIK+KDQ+SMDGVSSAKGHKIPSMLRQKFSSMFS  ESRRLS EK+DLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
Subjt:  QDVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR
        TLRLHFDNLGCKFIRKNNLSLVTLP+PL+FP+L  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

XP_022964095.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita moschata]

1.5e-220

90.89

Show/hide

Query:  MAEDSRSFELEETHYTEPEANSQSPA-KKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL
        MA DS+ F  EETHY EPEANSQSPA KKKKSEKKKKRVPPV  KIQVLSNHPEK PPLVGYFPSG+DP+KD +EE VEEQNSVRA+VYRHK KPNRMQL
Subjt:  MAEDSRSFELEETHYTEPEANSQSPA-KKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPE ESP VANDELSVQEKADRMREL+NLYGTK+SIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL
        AKKL SLKQEDDP+TKKDLD KMKNVVVNKEALES+NAQI+RNIPTYNASATTPQEAYPLDKIILKGEW FLEDLYFLLQ E+EISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL

Query:  QDVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKKKLCCI+SYITHLIKYKDQHSMDGVSS KGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVL LF DEFSSDPSDIA+DLRTSPF
Subjt:  QDVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR
        TLR+H+DNLGCKFIRKNNLSLVTLP+PLQFPELR+KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

XP_023000003.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita maxima]

9.0e-221

90.64

Show/hide

Query:  MAEDSRSFELEETHYTEPEANSQSPAKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQLV
        MA DS+ F  EETHY  PEANSQSP KKKKSEKKKKRVPPV  KIQVLSNHPEK PPLVGYFPSG+DP+KD +EEAVEEQNSVRA+VYRHK KPNRMQL+
Subjt:  MAEDSRSFELEETHYTEPEANSQSPAKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQLV

Query:  VSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQA
        VSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIASNMIFRLDPKV GSDVPE ESP VANDELSVQEKADRMREL+NLYGTK+SIKQA
Subjt:  VSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQA

Query:  KKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKLQ
        KKL SLKQEDDP+TKKDLD KMKNVVVNKEALES+NAQI+RNIPTYNASATTPQEAYPLDKIILKGEW FLEDLYFLLQ E+EISANYPSFVRNRIYKLQ
Subjt:  KKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKLQ

Query:  DVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFT
        D+QDEEEKKKLCCI+SYITHLIKYKDQHSMDGVSS +GHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIA+DLRTSPFT
Subjt:  DVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFT

Query:  LRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR
        LR+H+DNLGCKFIRKNNLS VTLP+PLQFPELRQKRRR
Subjt:  LRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

XP_023514670.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita pepo subsp. pepo]

5.3e-221

91.12

Show/hide

Query:  MAEDSRSFELEETHYTEPEANSQSPA-KKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL
        MA DS+ F  EETHY EPEANSQSPA KKKKSEKKKKRVPPV  KIQVLSNHPEK PPLVGYFPSG+DP+KD +EEAVEEQNSVRA+VYRHK KPNRMQL
Subjt:  MAEDSRSFELEETHYTEPEANSQSPA-KKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTG NVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPE ESP VANDELSVQEKADRMREL+NLYGTK+SIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL
        AKKL SLKQEDDP+TKKDLD KMKNVVVNKEALES+NAQI+RNIPTYNASATTPQEAYPLDKIILKGEW FLEDLYFLLQ E+EISANYP+FVRNRIYKL
Subjt:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL

Query:  QDVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKKKLCCI+SYITHLIKYKDQHSMDGVSS KGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVL LFADEFSSDPSDIA+DLRTSPF
Subjt:  QDVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR
        TLR+H+DNLGCKFIRKNNLSLVTLP+PLQFPELRQKRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DBN9 DNA-directed RNA polymerase I subunit rpa49

5.9e-218

89.98

Show/hide

Query:  MAEDSRSFELEETHYTEPEANSQSPAKK-KKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL
        MA D++SFELEETHY EPEANSQSPAKK +KSEKKKKRV  V A IQVLSNHPEKTPPLVGYFPSGF+PHKDADEEAV+EQ S+RARVYR+KNKPNRMQL
Subjt:  MAEDSRSFELEETHYTEPEANSQSPAKK-KKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIA+NMIFRLDPKVRGSDV EKESP V +DELSVQEKADRMRELTNLYGTKRSIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL
        AKKLHSLKQ DD DT+KDLD KMKNVVVNKEALE TNA+IARNIPTYNASATTPQEAYPLDKIIL GEWS+LED+Y LL+ EAEISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL

Query:  QDVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKKKLCCIFSYITHLIK+KDQ+SMDGVSSAKGHKIPSMLRQKFSSMFS  ESRRLS EK+DLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
Subjt:  QDVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR
        TLRLHFDNLGCKFIRKNNLSLVTLP+PL+FP+L  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

A0A6J1GQS4 DNA-directed RNA polymerase I subunit rpa49-like

8.2e-212

87.24

Show/hide

Query:  MAEDSRSFELEETHYTEPEANSQSPA-KKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL
        MAED++SFELE+ HY+EP++N QSPA KKKKSEKKKKRVP V AKIQVLSNHP+KTPPLV YFPSGFDPHKD +EEAVEEQ+SVRARVYRHKNKPNRMQL
Subjt:  MAEDSRSFELEETHYTEPEANSQSPA-KKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMIFRLDP++RGSDV E ESP V N+ELSVQEKA++MRELTNLYGTK+SI Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL
        AKKL SLKQEDDPDTKKDLD KMKNVVVNKEALEST AQIARNIPTYN SATTP+EAYPLDKIILKGEWS+LEDLY LLQEEAEISA YPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL

Query:  QDVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDVQDEEEKK+LC IFSYITHLIKYKDQHSM  V+SAK HK PSM+RQKFSSMF T+E+RRLS E  +LLISHVLVLTLFADEFSSDPSDIAKDLRTSP+
Subjt:  QDVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR
         LRLHFDNLGCKFIRKNNLSLVTLP PL+FPELRQKRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

A0A6J1HM51 DNA-directed RNA polymerase I subunit rpa49-like

7.4e-221

90.89

Show/hide

Query:  MAEDSRSFELEETHYTEPEANSQSPA-KKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL
        MA DS+ F  EETHY EPEANSQSPA KKKKSEKKKKRVPPV  KIQVLSNHPEK PPLVGYFPSG+DP+KD +EE VEEQNSVRA+VYRHK KPNRMQL
Subjt:  MAEDSRSFELEETHYTEPEANSQSPA-KKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPE ESP VANDELSVQEKADRMREL+NLYGTK+SIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL
        AKKL SLKQEDDP+TKKDLD KMKNVVVNKEALES+NAQI+RNIPTYNASATTPQEAYPLDKIILKGEW FLEDLYFLLQ E+EISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL

Query:  QDVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKKKLCCI+SYITHLIKYKDQHSMDGVSS KGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVL LF DEFSSDPSDIA+DLRTSPF
Subjt:  QDVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR
        TLR+H+DNLGCKFIRKNNLSLVTLP+PLQFPELR+KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

A0A6J1JX25 DNA-directed RNA polymerase I subunit rpa49-like

2.0e-213

87.93

Show/hide

Query:  MAEDSRSFELEETHYTEPEANSQSPA-KKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL
        MAED++SFELE+ HY+EP+ANSQSPA KKKKSEKKKKRVP V AKIQVLSNHP+KTPPLV YFPSGFDPHKDA+EEAVEEQ+SVRARVYRHKNKPNRMQL
Subjt:  MAEDSRSFELEETHYTEPEANSQSPA-KKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMIFRLDP++RGSDV E ES  V N+ELSVQEKA++MRELTNLYGTK+SI Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL
        AKKLHSLKQEDDPDTKKDLD KMKNVVVNKEALEST AQIARNIPTYN SATTP+EAYPLDKIILKGEWSFLED+Y LLQEEAEISA YPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL

Query:  QDVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDVQDEEEKK+LC IFSYITHLIKYKDQHSM  V+SAK HK PSM+RQKFSSMF T+E+RRLS E  +LLISHVLVLTLFADEFSSDPSDIAKDLRTSP+
Subjt:  QDVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR
         LRLHFDNLGCKFIRKNNLSLVTLP PL+FPELRQKRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

A0A6J1KIP6 DNA-directed RNA polymerase I subunit rpa49-like

4.3e-221

90.64

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Query:  MAEDSRSFELEETHYTEPEANSQSPAKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQLV
        MA DS+ F  EETHY  PEANSQSP KKKKSEKKKKRVPPV  KIQVLSNHPEK PPLVGYFPSG+DP+KD +EEAVEEQNSVRA+VYRHK KPNRMQL+
Subjt:  MAEDSRSFELEETHYTEPEANSQSPAKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQLV

Query:  VSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQA
        VSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIASNMIFRLDPKV GSDVPE ESP VANDELSVQEKADRMREL+NLYGTK+SIKQA
Subjt:  VSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQA

Query:  KKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKLQ
        KKL SLKQEDDP+TKKDLD KMKNVVVNKEALES+NAQI+RNIPTYNASATTPQEAYPLDKIILKGEW FLEDLYFLLQ E+EISANYPSFVRNRIYKLQ
Subjt:  KKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKLQ

Query:  DVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFT
        D+QDEEEKKKLCCI+SYITHLIKYKDQHSMDGVSS +GHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIA+DLRTSPFT
Subjt:  DVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFT

Query:  LRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR
        LR+H+DNLGCKFIRKNNLS VTLP+PLQFPELRQKRRR
Subjt:  LRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

SwissProt top hits

e value

%identity

Alignment

O14086 DNA-directed RNA polymerase I subunit rpa49

3.9e-09

24.71

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Query:  IQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVP
        +++L       PPLV    SGF P             + R ++ +  N+ NR   ++  T   V F   N   ++TA  +   Y L V DK  +  KIVP
Subjt:  IQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVP

Query:  IASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIK--QAKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIA--
              F  +       + EK+               ++   L   +GT++S K    +  + +K E   D K  L   + NV    EAL  T   IA  
Subjt:  IASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIK--QAKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIA--

Query:  ----RNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAE------ISANYPSFVRNRIYKLQDVQDEEEKKKLCCIFSYITHLIKYKDQHSM
            R IP  N  A + ++AY L+ II K E+S +  +  LL+   E      +   +  F+  R  +L  +++ ++K+    I  YI+ L  +      
Subjt:  ----RNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAE------ISANYPSFVRNRIYKLQDVQDEEEKKKLCCIFSYITHLIKYKDQHSM

Query:  DGVSSAKGHKI---PSMLRQKFSSMFSTTE---SRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFTLRLHFDNLGCKFIR----------
         G       K+   P +L       F+ T    S ++S+ + D +I ++LVL L  D +S+D   +A DL          F  +GC+ +           
Subjt:  DGVSSAKGHKI---PSMLRQKFSSMFSTTE---SRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFTLRLHFDNLGCKFIR----------

Query:  -----KNNLSLVTLPIPLQFPELRQKRRR
               N     L IPL+FP+ R+ R R
Subjt:  -----KNNLSLVTLPIPLQFPELRQKRRR

Arabidopsis top hits

e value

%identity

Alignment

AT3G13940.1 DNA binding;DNA-directed RNA polymerases

3.9e-97

43.54

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Query:  EDSRSFELEETHYTEPEANSQSPAKKKK----SEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHK-NKPNRM
        E+   +  EE  +  P+   +   K KK    +E + +    VT K+  ++  P++  P+V YF +G+DP K   +       + +  VY+HK +   R+
Subjt:  EDSRSFELEETHYTEPEANSQSPAKKKK----SEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHK-NKPNRM

Query:  QLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSI
        Q+VVSP G+ V+FVGTNY GE  A  Q  TY +GV ++  ++L+I+P+A N I RL+P+V+  +  E+E    A+    V+E  +      + Y TK+++
Subjt:  QLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSI

Query:  KQAKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISAN-YPSFVRNRI
         + KK  +L   DD  T+K LD K+  + VN  ALE T++ +ARNIP YN +ATT  EAYPL+KII KG+WSFLED+Y+LLQ+E E +   YP FVRNR+
Subjt:  KQAKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISAN-YPSFVRNRI

Query:  YKLQDVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRT
        Y+L+D++D+ +K+ +C   + +THL+K+KD++SM+G  SAK HK+P + RQKF+SMF  +ES R+  +K +LLIS+VLVL+L  D F +DP DIAKDLR 
Subjt:  YKLQDVQDEEEKKKLCCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRT

Query:  SPFTLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRR
        S   LR HF  LGCKF+++N+ ++ TLP PL FPE+ ++RR
Subjt:  SPFTLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGGAAGATTCTAGATCTTTTGAATTGGAAGAAACTCATTACACAGAACCAGAAGCAAATTCACAGTCTCCAGCGAAGAAGAAGAAGAGTGAGAAGAAGAAGAAGCG
AGTTCCACCAGTGACTGCCAAAATCCAAGTCCTTAGCAACCATCCAGAGAAAACTCCGCCACTAGTTGGTTATTTCCCATCTGGGTTTGATCCTCACAAGGATGCTGATG
AGGAAGCAGTTGAGGAGCAGAATTCTGTGAGGGCTAGGGTTTACAGGCACAAGAACAAACCAAATAGGATGCAGCTGGTTGTTAGTCCAACAGGGTCAAATGTGGATTTT
GTTGGCACCAATTATTTGGGCGAGGCTACTGCTGGGAAACAGCATTGCACCTATGCTCTTGGTGTTCTTGATAAGGCGACCCAAAGCTTAAAGATTGTGCCTATTGCTTC
AAATATGATATTTAGATTGGATCCAAAAGTCAGAGGTTCAGATGTTCCTGAAAAGGAATCCCCATGTGTGGCAAATGACGAACTTTCTGTGCAGGAGAAAGCTGATAGAA
TGAGAGAGCTGACCAATCTCTATGGAACAAAGAGGTCAATAAAGCAGGCAAAGAAGCTGCATTCTTTGAAGCAAGAGGATGATCCTGATACCAAGAAGGATCTGGATGTG
AAAATGAAAAATGTAGTTGTAAATAAAGAGGCCTTGGAAAGTACAAATGCACAAATTGCTCGCAATATACCAACATATAATGCTTCTGCAACTACTCCACAAGAAGCTTA
CCCACTCGACAAGATTATTCTCAAGGGAGAATGGAGTTTCCTGGAAGATCTTTATTTCCTTTTGCAAGAGGAAGCTGAAATAAGTGCAAATTATCCATCCTTTGTCCGCA
ACAGAATTTATAAATTGCAAGACGTTCAGGACGAGGAAGAGAAGAAGAAGCTCTGCTGCATATTTTCATACATCACGCATCTAATTAAGTACAAGGACCAGCATTCCATG
GACGGTGTTTCTTCTGCAAAGGGCCATAAAATCCCTAGCATGCTACGCCAAAAGTTCTCATCCATGTTTTCGACTACGGAGTCGAGAAGACTGTCAGCAGAGAAAACCGA
TCTTCTCATTAGCCACGTGTTGGTGCTTACGCTATTTGCCGATGAATTCAGCAGCGATCCATCAGACATAGCGAAGGATCTCAGAACTAGCCCTTTCACCCTAAGACTCC
ATTTTGATAACCTGGGTTGTAAGTTCATACGCAAGAACAACTTGTCATTGGTTACGCTTCCCATCCCGCTTCAATTTCCAGAGTTGAGGCAAAAGAGACGACGATGA

mRNA sequence

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AAACAAAGAGAAAACCCTAAACCCTTTCATCTCCTCTCACTCACAGTAACACTGCTCCTTCACGCCGGTTCCGCATCCCTTTCGGCAGCTCGGTGTCGCCGCCGCCGTCT
TCGCCGTCCCCGCCGTCGTCTCTCTCCCATTCAGTCCCGCCGCCGCCTACCTCCTAGAGATTAGCACTGATTTTCCAGTCTCTTGTGGTCACTGGTGTGGCTCCAGAAGG
ATTCCAGTTTTATTCTTTCCATTATGATGCAAAAAATGAATGAGATGTAATTCCCAGCCTGCTCTCAGAAAATTGACTTGTACGTTTTCTTTTTACAAACGAGCTGAAAC
TCCATGTGTTGATGATTGTTGGTGCATTGTAAAATCCGAGGTTTTCTTTGACTTCTACACACACTGAGGTTGTTAACGGAATTAATGGCGGAAGATTCTAGATCTTTTGA
ATTGGAAGAAACTCATTACACAGAACCAGAAGCAAATTCACAGTCTCCAGCGAAGAAGAAGAAGAGTGAGAAGAAGAAGAAGCGAGTTCCACCAGTGACTGCCAAAATCC
AAGTCCTTAGCAACCATCCAGAGAAAACTCCGCCACTAGTTGGTTATTTCCCATCTGGGTTTGATCCTCACAAGGATGCTGATGAGGAAGCAGTTGAGGAGCAGAATTCT
GTGAGGGCTAGGGTTTACAGGCACAAGAACAAACCAAATAGGATGCAGCTGGTTGTTAGTCCAACAGGGTCAAATGTGGATTTTGTTGGCACCAATTATTTGGGCGAGGC
TACTGCTGGGAAACAGCATTGCACCTATGCTCTTGGTGTTCTTGATAAGGCGACCCAAAGCTTAAAGATTGTGCCTATTGCTTCAAATATGATATTTAGATTGGATCCAA
AAGTCAGAGGTTCAGATGTTCCTGAAAAGGAATCCCCATGTGTGGCAAATGACGAACTTTCTGTGCAGGAGAAAGCTGATAGAATGAGAGAGCTGACCAATCTCTATGGA
ACAAAGAGGTCAATAAAGCAGGCAAAGAAGCTGCATTCTTTGAAGCAAGAGGATGATCCTGATACCAAGAAGGATCTGGATGTGAAAATGAAAAATGTAGTTGTAAATAA
AGAGGCCTTGGAAAGTACAAATGCACAAATTGCTCGCAATATACCAACATATAATGCTTCTGCAACTACTCCACAAGAAGCTTACCCACTCGACAAGATTATTCTCAAGG
GAGAATGGAGTTTCCTGGAAGATCTTTATTTCCTTTTGCAAGAGGAAGCTGAAATAAGTGCAAATTATCCATCCTTTGTCCGCAACAGAATTTATAAATTGCAAGACGTT
CAGGACGAGGAAGAGAAGAAGAAGCTCTGCTGCATATTTTCATACATCACGCATCTAATTAAGTACAAGGACCAGCATTCCATGGACGGTGTTTCTTCTGCAAAGGGCCA
TAAAATCCCTAGCATGCTACGCCAAAAGTTCTCATCCATGTTTTCGACTACGGAGTCGAGAAGACTGTCAGCAGAGAAAACCGATCTTCTCATTAGCCACGTGTTGGTGC
TTACGCTATTTGCCGATGAATTCAGCAGCGATCCATCAGACATAGCGAAGGATCTCAGAACTAGCCCTTTCACCCTAAGACTCCATTTTGATAACCTGGGTTGTAAGTTC
ATACGCAAGAACAACTTGTCATTGGTTACGCTTCCCATCCCGCTTCAATTTCCAGAGTTGAGGCAAAAGAGACGACGATGAGTGAGACGGTTAGATTGTAGTAGTTACAC
TGATTTTGTAATTTGAAGAAGCTGAATTCTACACAGGAAAGCTCGAGCAATTTTGTGGAGGAAAACGGGTAAATGGTCATATTGATAATTATTCATATGTTCTTTCTTTC
ATATTGCAAATGGCAACTTGTTTCTATGAAATGGCTCTGGCATAGAATGGTGTTTTCTTATTTGGAAGTTGGAACTTTGGATGCTGAAGCTTATTTGGAAATGAGTCAAA
GGTTTATTCTTCATTTCTTCTTACAATAATCAACTTGTA

Protein sequence

Show/hide protein sequence

MAEDSRSFELEETHYTEPEANSQSPAKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQLVVSPTGSNVDF
VGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPCVANDELSVQEKADRMRELTNLYGTKRSIKQAKKLHSLKQEDDPDTKKDLDV
KMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKLQDVQDEEEKKKLCCIFSYITHLIKYKDQHSM
DGVSSAKGHKIPSMLRQKFSSMFSTTESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFTLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

Lcy05g001040 (gene) of Sponge gourd (P93075) v1 genome