; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy05g002750 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g002750
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
Genome locationChr05:2529795..2531724
RNA-Seq ExpressionLcy05g002750
SyntenyLcy05g002750
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7135826.1 hypothetical protein RHSIM_Rhsim08G0064500 [Rhododendron simsii]5.5e-0425.48Show/hide
Query:  QGIKSGASYDATCEEEEEEEGR--------GVLARNVTSESTSGSAIC----HWIRTV----SLDCSNIIVESDCLWAVKFLKREVGPWSDVQTLVESIW
        Q  +SG   D   ++   E  R        G +A    +    GS +C     W   +    +LD   I+VE D    V+ L R++   +DV+ ++E I 
Subjt:  QGIKSGASYDATCEEEEEEEGR--------GVLARNVTSESTSGSAIC----HWIRTV----SLDCSNIIVESDCLWAVKFLKREVGPWSDVQTLVESIW

Query:  SLMPCFDDIQFVLILKRCNKVADLIARRARMSRSCETWVSHIPSWICSLVDLDSSVF
         L   F    F  + +  N VAD +A         +TW +  PSW+   +  D  +F
Subjt:  SLMPCFDDIQFVLILKRCNKVADLIARRARMSRSCETWVSHIPSWICSLVDLDSSVF

KMS97072.1 hypothetical protein BVRB_7g179330 [Beta vulgaris subsp. vulgaris]2.2e-0526.49Show/hide
Query:  DATCEEEEEEEGRGVLARNVTSESTSGSAICHWIRTVSLD----------------------CSNIIVESDCLWAVKFLKREVGPWSDVQTLVESIWSLM
        DA    E    G G++AR+      +G  +  W RT+S D                       SN+++ESD    +  +   +    D+Q ++E + +L+
Subjt:  DATCEEEEEEEGRGVLARNVTSESTSGSAICHWIRTVSLD----------------------CSNIIVESDCLWAVKFLKREVGPWSDVQTLVESIWSLM

Query:  PCFDDIQFVLILKRCNKVADLIARRARMSRSCETWVSHIPSWICSLVDLDS
        P F+ I+F    + CN++A  +A+ A  +   E W+   PSWI  L+  DS
Subjt:  PCFDDIQFVLILKRCNKVADLIARRARMSRSCETWVSHIPSWICSLVDLDS

XP_021839114.1 uncharacterized protein LOC110778879 [Spinacia oleracea]8.5e-0533.33Show/hide
Query:  NIIVESDCLWAVKFLKREVGPWSDVQTLVESIWSLMPCFDDIQFVLILKRCNKVADLIARRARMSRSCETWVSHIPSWICSLVDLDSSVF
        +I++E D    ++ LK      S VQ +VE   S+MP FD I F    + C++VA  +A++A  + S E W+   P WI  ++  D+  F
Subjt:  NIIVESDCLWAVKFLKREVGPWSDVQTLVESIWSLMPCFDDIQFVLILKRCNKVADLIARRARMSRSCETWVSHIPSWICSLVDLDSSVF

XP_030923213.1 uncharacterized protein LOC115950104 [Quercus lobata]1.1e-0432.58Show/hide
Query:  DCSNIIVESDCLWAVKFLKREVGPWSDVQTLVESIWSLMPCFDDIQFVLILKRCNKVADLIARRARMSRSCETWVSHIPSWICSLVDLD
        D  NII E D +  +  + +E    +    +V++I SL+  F   QFV + + CN VAD +A++A+       W+  +P+ I  LVD D
Subjt:  DCSNIIVESDCLWAVKFLKREVGPWSDVQTLVESIWSLMPCFDDIQFVLILKRCNKVADLIARRARMSRSCETWVSHIPSWICSLVDLD

XP_030957684.1 uncharacterized protein LOC115979763 [Quercus lobata]7.2e-0423.81Show/hide
Query:  SYDATCEEEEEEEGRGVLARN----VTSESTSGSAICHWIR-------------TVSLDCSNIIVESDCLWAVKFLKREVGPWSDVQTLVESIWSLMPCF
        ++DAT      + G GV+ RN    V    +S   + H +               + L  + ++ E D    +  L   VG ++    +++ I  L   F
Subjt:  SYDATCEEEEEEEGRGVLARN----VTSESTSGSAICHWIR-------------TVSLDCSNIIVESDCLWAVKFLKREVGPWSDVQTLVESIWSLMPCF

Query:  DDIQFVLILKRCNKVADLIARRARMSRSCETWVSHIPSWICSLVDLD
          ++F  + + CN VAD +A++A++    + W+  +P+ I  LV LD
Subjt:  DDIQFVLILKRCNKVADLIARRARMSRSCETWVSHIPSWICSLVDLD

TrEMBL top hitse value%identityAlignment
A0A0J8BAU9 Uncharacterized protein1.1e-0526.49Show/hide
Query:  DATCEEEEEEEGRGVLARNVTSESTSGSAICHWIRTVSLD----------------------CSNIIVESDCLWAVKFLKREVGPWSDVQTLVESIWSLM
        DA    E    G G++AR+      +G  +  W RT+S D                       SN+++ESD    +  +   +    D+Q ++E + +L+
Subjt:  DATCEEEEEEEGRGVLARNVTSESTSGSAICHWIRTVSLD----------------------CSNIIVESDCLWAVKFLKREVGPWSDVQTLVESIWSLM

Query:  PCFDDIQFVLILKRCNKVADLIARRARMSRSCETWVSHIPSWICSLVDLDS
        P F+ I+F    + CN++A  +A+ A  +   E W+   PSWI  L+  DS
Subjt:  PCFDDIQFVLILKRCNKVADLIARRARMSRSCETWVSHIPSWICSLVDLDS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACGAATGAGACGAAATTGTGTGCCCAAAACGGACATACAAGTGATCCCGTGTGACGCGAGGATGCAGAAACAGATCCAGGGGATAAAATCCGGAGCATCGTACGA
TGCAACATGTGAAGAGGAAGAGGAAGAGGAAGGCAGAGGGGTTTTAGCCAGAAATGTAACGTCGGAATCAACCTCGGGTTCTGCTATATGCCATTGGATACGCACAGTGT
CTTTGGACTGCTCAAATATTATCGTGGAATCTGATTGTTTGTGGGCTGTGAAATTCCTTAAGAGAGAAGTTGGGCCCTGGAGTGATGTTCAGACTTTGGTAGAGTCTATT
TGGAGCCTAATGCCTTGTTTTGATGATATTCAATTTGTTTTAATCCTTAAAAGATGTAATAAGGTTGCTGATTTGATAGCTAGAAGAGCTAGGATGTCTAGATCGTGTGA
AACTTGGGTTTCTCATATCCCGAGTTGGATTTGCTCGTTGGTTGATTTAGACAGTTCAGTTTTTGCCCCTTGTGGCGTTATAATATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGACGAATGAGACGAAATTGTGTGCCCAAAACGGACATACAAGTGATCCCGTGTGACGCGAGGATGCAGAAACAGATCCAGGGGATAAAATCCGGAGCATCGTACGA
TGCAACATGTGAAGAGGAAGAGGAAGAGGAAGGCAGAGGGGTTTTAGCCAGAAATGTAACGTCGGAATCAACCTCGGGTTCTGCTATATGCCATTGGATACGCACAGTGT
CTTTGGACTGCTCAAATATTATCGTGGAATCTGATTGTTTGTGGGCTGTGAAATTCCTTAAGAGAGAAGTTGGGCCCTGGAGTGATGTTCAGACTTTGGTAGAGTCTATT
TGGAGCCTAATGCCTTGTTTTGATGATATTCAATTTGTTTTAATCCTTAAAAGATGTAATAAGGTTGCTGATTTGATAGCTAGAAGAGCTAGGATGTCTAGATCGTGTGA
AACTTGGGTTTCTCATATCCCGAGTTGGATTTGCTCGTTGGTTGATTTAGACAGTTCAGTTTTTGCCCCTTGTGGCGTTATAATATTTTAG
Protein sequenceShow/hide protein sequence
MRRMRRNCVPKTDIQVIPCDARMQKQIQGIKSGASYDATCEEEEEEEGRGVLARNVTSESTSGSAICHWIRTVSLDCSNIIVESDCLWAVKFLKREVGPWSDVQTLVESI
WSLMPCFDDIQFVLILKRCNKVADLIARRARMSRSCETWVSHIPSWICSLVDLDSSVFAPCGVIIF