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Lcy05g003450 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g003450
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description40S ribosomal protein S12
Genome locationChr05:3069452..3071563
RNA-Seq ExpressionLcy05g003450
SyntenyLcy05g003450
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000530 - Ribosomal protein S12e
IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45
IPR029064 - 50S ribosomal protein L30e-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571063.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia]2.0e-4794.29Show/hide
Query:  MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGF
        MSADEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG 
Subjt:  MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGF

Query:  LSSES
           +S
Subjt:  LSSES

XP_004147008.1 40S ribosomal protein S12 [Cucumis sativus]7.0e-4895.24Show/hide
Query:  MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGF
        MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG 
Subjt:  MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGF

Query:  LSSES
           +S
Subjt:  LSSES

XP_022986724.1 40S ribosomal protein S12-like [Cucurbita maxima]2.7e-4794.29Show/hide
Query:  MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGF
        MSADEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG 
Subjt:  MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGF

Query:  LSSES
           +S
Subjt:  LSSES

XP_023512603.1 40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo]2.0e-4794.29Show/hide
Query:  MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGF
        MSADEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG 
Subjt:  MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGF

Query:  LSSES
           +S
Subjt:  LSSES

XP_038901505.1 40S ribosomal protein S12-like [Benincasa hispida]2.0e-4794.29Show/hide
Query:  MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGF
        MSADEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG 
Subjt:  MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGF

Query:  LSSES
           +S
Subjt:  LSSES

TrEMBL top hitse value%identityAlignment
A0A0A0LM61 40S ribosomal protein S123.4e-4895.24Show/hide
Query:  MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGF
        MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG 
Subjt:  MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGF

Query:  LSSES
           +S
Subjt:  LSSES

A0A1S3C6L3 40S ribosomal protein S123.4e-4895.24Show/hide
Query:  MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGF
        MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG 
Subjt:  MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGF

Query:  LSSES
           +S
Subjt:  LSSES

A0A5D3BJY5 40S ribosomal protein S123.4e-4895.24Show/hide
Query:  MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGF
        MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG 
Subjt:  MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGF

Query:  LSSES
           +S
Subjt:  LSSES

A0A6J1JGV5 40S ribosomal protein S121.3e-4794.29Show/hide
Query:  MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGF
        MSADEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG 
Subjt:  MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGF

Query:  LSSES
           +S
Subjt:  LSSES

A0A6J1KYK1 40S ribosomal protein S121.3e-4793.33Show/hide
Query:  MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGF
        MSADEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDY+KLVKALCAEHNVNLMTVPSAKTLGEWAG 
Subjt:  MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGF

Query:  LSSES
           +S
Subjt:  LSSES

SwissProt top hitse value%identityAlignment
P25398 40S ribosomal protein S122.0e-2157.14Show/hide
Query:  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG
        A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+ALCAEH +NL+ V   K LGEW G
Subjt:  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG

Q76I81 40S ribosomal protein S122.0e-2157.14Show/hide
Query:  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG
        A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+ALCAEH +NL+ V   K LGEW G
Subjt:  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG

Q9S9P1 40S ribosomal protein S12-12.8e-3165.14Show/hide
Query:  MSADEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGE
        MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGE
Subjt:  MSADEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGE

Query:  WAGFLSSES
        WAG    +S
Subjt:  WAGFLSSES

Q9SKZ3 40S ribosomal protein S12-21.5e-3264.22Show/hide
Query:  MSADEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGE
        MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGE
Subjt:  MSADEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGE

Query:  WAGFLSSES
        WAG    +S
Subjt:  WAGFLSSES

Q9XHS0 40S ribosomal protein S127.6e-3782.02Show/hide
Query:  EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG
        EAP P LGEPMD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC+QPDYVKLVKALCAEHNV+L+TVPSAKTLGEWAG
Subjt:  EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAG

Arabidopsis top hitse value%identityAlignment
AT1G15930.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.0e-3265.14Show/hide
Query:  MSADEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGE
        MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGE
Subjt:  MSADEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGE

Query:  WAGFLSSES
        WAG    +S
Subjt:  WAGFLSSES

AT1G15930.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.0e-3265.14Show/hide
Query:  MSADEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGE
        MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGE
Subjt:  MSADEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGE

Query:  WAGFLSSES
        WAG    +S
Subjt:  WAGFLSSES

AT2G32060.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.1e-3364.22Show/hide
Query:  MSADEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGE
        MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGE
Subjt:  MSADEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGE

Query:  WAGFLSSES
        WAG    +S
Subjt:  WAGFLSSES

AT2G32060.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.1e-3364.22Show/hide
Query:  MSADEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGE
        MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGE
Subjt:  MSADEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGE

Query:  WAGFLSSES
        WAG    +S
Subjt:  WAGFLSSES

AT2G32060.3 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.1e-3364.22Show/hide
Query:  MSADEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGE
        MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGE
Subjt:  MSADEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGE

Query:  WAGFLSSES
        WAG    +S
Subjt:  WAGFLSSES


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGCTGATGAAGGTGCAGTTGTGGCTGAGGCTCCCGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAGCTTGTTCTTAGAAAATCATTGGCTCA
CGGTGGTCTTGTTAGAGGCCTTCATGAGAGCGCTAAAGCTATTGAAAAGCACGCTGCTCAGCTCTGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTAG
TCAAAGCACTTTGTGCTGAGCACAACGTTAACTTGATGACAGTTCCTAGTGCAAAGACCCTTGGCGAGTGGGCTGGTTTTTTATCTTCTGAGTCCATTGATGTGGAGCTC
ATTATCATTCCGGCAAACTGA
mRNA sequenceShow/hide mRNA sequence
CTCAATCAGTCCTTCTGCCGCCGCCGCCATCTCTCAATCTCTGGTACGCTTTGCTCTCTCCCTCTCTCAATTTCCGGTGAACAATTCTTGTTCTCCTCACGTATGGCCAT
TGTTATCCCCTCCTTTTTGTTCACAAACACAAAGATCGTCCCCTATTTGGATTATCAAAACCGAAATAACCAACCTCCGCATTAGAACGAACCGATTAGTGGTTTACTCT
ATAAGTCTTTCTTCTTTATTCATATTTTCTGTTCTGGGGTTCCTTTTAATTCTCTTGTCTAATTATTTTGTTTTGCAGTTTTTTTTTTGCTACAGGAAGGAGAAAGAACT
TCTAATCGAGAAGAAAAATGTCAGCTGATGAAGGTGCAGTTGTGGCTGAGGCTCCCGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAGCTTGTTCTT
AGAAAATCATTGGCTCACGGTGGTCTTGTTAGAGGCCTTCATGAGAGCGCTAAAGCTATTGAAAAGCACGCTGCTCAGCTCTGTGTCTTGGGAGAAGACTGCAACCAGCC
AGATTATGTTAAACTAGTCAAAGCACTTTGTGCTGAGCACAACGTTAACTTGATGACAGTTCCTAGTGCAAAGACCCTTGGCGAGTGGGCTGGTTTTTTATCTTCTGAGT
CCATTGATGTGGAGCTCATTATCATTCCGGCAAACTGA
Protein sequenceShow/hide protein sequence
MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGFLSSESIDVEL
IIIPAN