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Lcy05g004240 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g004240
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr05:3774129..3775337
RNA-Seq ExpressionLcy05g004240
SyntenyLcy05g004240
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7823154.1 putative WRKY transcription factor 31 [Senna tora]4.5e-0540.24Show/hide
Query:  KMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLI
        K+N D +   NP  +     IG I R+  G+     S Y+    T    ELWAI+ G+K+A +LGC+ L +ESDSL+A NL+
Subjt:  KMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLI

XP_011016192.1 PREDICTED: uncharacterized protein LOC105119721 isoform X2 [Populus euphratica]4.5e-0535.78Show/hide
Query:  KMNVDASWGTNPPSYPPSSGIGAIFRDLAG-SIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELI
        K+N D S  +       ++GIG +FRD  G +I G  S     D     VELWAI  GL +A+ L  + + VESDSL  +N I ++    G+ +A L+ I
Subjt:  KMNVDASWGTNPPSYPPSSGIGAIFRDLAG-SIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELI

Query:  WAMIPSFRE
        W ++  F++
Subjt:  WAMIPSFRE

XP_018498111.1 PREDICTED: uncharacterized protein LOC108865556 [Pyrus x bretschneideri]2.6e-0534.26Show/hide
Query:  KMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELIW
        K+N+D SW  N    P ++GIG + RDL GS+ G    ++ +  +   VE+ AI EGLK+A S G   ++VE+D    +++I K++         L+ +W
Subjt:  KMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELIW

Query:  AMIPSFRE
         +IP   E
Subjt:  AMIPSFRE

XP_023919081.1 uncharacterized protein LOC112030645 [Quercus suber]4.5e-0531.96Show/hide
Query:  PPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELIWAMIPSFRE
        PP    S+G+G + R+  G + G+ S  + + Y+   +E  AIA  L+ A  LG +R I+E+DSL+ +  + + S+ L  V   L+ I   +  F E
Subjt:  PPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELIWAMIPSFRE

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]5.3e-0637Show/hide
Query:  KMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELIW
        K+NVDA+W  +    P SSG  AI RD  GS++    S ID  Y  P  E + + +GL++   +  +++IV+SD   AI+L  K       V  +LE IW
Subjt:  KMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELIW

TrEMBL top hitse value%identityAlignment
A0A200PNI2 Ribonuclease H domain1.4e-0435.83Show/hide
Query:  TWRVDGMGKKKKKMNVDASWGTNPPSYPPSSGIGAIFRDLAGS-IRGTTSSYIDVDYTGP-NVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKS
        TW+   +G    K+N D S        P ++G+G + RD  G  I G  S    V   G   VELWAI  GL +A+  G + + VESDSL A+N+I +K 
Subjt:  TWRVDGMGKKKKKMNVDASWGTNPPSYPPSSGIGAIFRDLAGS-IRGTTSSYIDVDYTGP-NVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKS

Query:  DQLGEVEAFLELIWAMIPSF
            + E+ L+ IW ++  F
Subjt:  DQLGEVEAFLELIWAMIPSF

A0A4V6ABH7 RNase H domain-containing protein1.4e-0435.78Show/hide
Query:  KMNVDASWGTNPPSYPPSSGIGAIFRDLAG-SIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELI
        K+N D S  +       ++GIG +FRD  G +I G  S     D     VELWAI  GL +A++L  + + VESDSL A+N I ++    G+ +A L+ I
Subjt:  KMNVDASWGTNPPSYPPSSGIGAIFRDLAG-SIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELI

Query:  WAMIPSFRE
          ++  F++
Subjt:  WAMIPSFRE

A0A6J1DZK3 uncharacterized protein LOC1110249681.4e-0437.04Show/hide
Query:  KMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELIW
        KMN DA+           SG+G + R+    I G    +  V  T    ++ AI EGL +A  LG  R++VE+DSL A+NLI  KS   GE  +++E I 
Subjt:  KMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELIW

Query:  AMIPSFRE
        A    F+E
Subjt:  AMIPSFRE

A0A6P5RF39 uncharacterized protein LOC1107447648.3e-0536Show/hide
Query:  KMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELIW
        K+NVD +W  N         +G + RD  G++ G  SS+  V  +   VE  AI EGLK+A ++  + ++VESDS + I  I+KK   L  +   L  IW
Subjt:  KMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELIW

A0A803P6S3 Uncharacterized protein3.7e-0533.33Show/hide
Query:  GKKKKKMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAF
        G  + K+NVDA  G     +   SG+G + RD AG +R   ++ +        +EL AI  GL++ I    E+  +ESD L A+NLI KK D   +++  
Subjt:  GKKKKKMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAF

Query:  LELIWAMI
        L  I +++
Subjt:  LELIWAMI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGCGTTTTGTGCGGAGCTTATTTATAGAGTGGGCCTGAAGGCGCGTGGACCCCATGGAGACTTGGTGTCCAATGCGACGGCGAAAGGTGGCGCGCAAAATGCGGC
CACGTGGAGGGTAGATGGAATGGGAAAGAAAAAAAAAAAAATGAATGTGGATGCTTCGTGGGGCACAAATCCTCCCTCATATCCTCCCTCATCTGGAATAGGAGCCATTT
TTAGGGATTTAGCAGGTTCTATCAGAGGGACAACAAGCTCTTACATTGATGTGGATTATACGGGTCCAAATGTTGAATTATGGGCCATAGCTGAAGGCTTGAAGATGGCT
ATAAGTTTGGGCTGTGAAAGATTGATAGTGGAATCTGATAGTCTAATGGCCATAAATCTCATTACAAAAAAATCAGATCAATTGGGAGAAGTAGAAGCTTTTCTAGAATT
GATTTGGGCAATGATCCCATCATTTAGAGAGAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGCGTTTTGTGCGGAGCTTATTTATAGAGTGGGCCTGAAGGCGCGTGGACCCCATGGAGACTTGGTGTCCAATGCGACGGCGAAAGGTGGCGCGCAAAATGCGGC
CACGTGGAGGGTAGATGGAATGGGAAAGAAAAAAAAAAAAATGAATGTGGATGCTTCGTGGGGCACAAATCCTCCCTCATATCCTCCCTCATCTGGAATAGGAGCCATTT
TTAGGGATTTAGCAGGTTCTATCAGAGGGACAACAAGCTCTTACATTGATGTGGATTATACGGGTCCAAATGTTGAATTATGGGCCATAGCTGAAGGCTTGAAGATGGCT
ATAAGTTTGGGCTGTGAAAGATTGATAGTGGAATCTGATAGTCTAATGGCCATAAATCTCATTACAAAAAAATCAGATCAATTGGGAGAAGTAGAAGCTTTTCTAGAATT
GATTTGGGCAATGATCCCATCATTTAGAGAGAGATAA
Protein sequenceShow/hide protein sequence
MRAFCAELIYRVGLKARGPHGDLVSNATAKGGAQNAATWRVDGMGKKKKKMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMA
ISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELIWAMIPSFRER