CuGenDBv2

Gene ID	Lcy05g004470
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 11-like
Genome location	Chr05:3961355..3963440
RNA-Seq Expression	Lcy05g004470
Synteny	Lcy05g004470
Gene Ontology terms	GO:0006366 - transcription by RNA polymerase II (biological process) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0001055 - RNA polymerase II activity (molecular function) GO:0003677 - DNA binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR008193 - DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain IPR036603 - RNA polymerase, RBP11-like subunit IPR037685 - RNA polymerase RBP11

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6593293.1 DNA-directed RNA polymerases II, IV and V subunit 11, partial [Cucurbita argyrosperma subsp. sororia]

4.5e-55

94.83

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFELEGELSRFSRTY
        LK+ELEG  SRFSRTY
Subjt:  LKFELEGELSRFSRTY

XP_004135939.1 DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus]

4.5e-55

93.97

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNI+RMQLHRDDNVLFA YQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFELEGELSRFSRTY
        LK+ELEGE+SRFSR Y
Subjt:  LKFELEGELSRFSRTY

XP_022150995.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Momordica charantia]

1.6e-55

93.97

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNI+RMQLHRDDNVLFAAYQLPHPLKYRIL+RIHTASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFELEGELSRFSRTY
        LKFELE ELSRFSR Y
Subjt:  LKFELEGELSRFSRTY

XP_022960210.1 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita moschata]

4.5e-55

94.83

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFELEGELSRFSRTY
        LK+ELEG  SRFSRTY
Subjt:  LKFELEGELSRFSRTY

XP_023004699.1 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita maxima]

1.3e-54

93.97

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFELEGELSRFSRTY
        LK+ELEG  SRFSR+Y
Subjt:  LKFELEGELSRFSRTY

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CFN3 DNA-directed RNA polymerases II, IV and V subunit 11-like

1.1e-54

93.1

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNI+RMQLHRDDNVLFA YQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFELEGELSRFSRTY
        LK+ELE E+SRFSR Y
Subjt:  LKFELEGELSRFSRTY

A0A6J1DA06 DNA-directed RNA polymerases II, IV and V subunit 11-like

7.6e-56

93.97

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNI+RMQLHRDDNVLFAAYQLPHPLKYRIL+RIHTASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFELEGELSRFSRTY
        LKFELE ELSRFSR Y
Subjt:  LKFELEGELSRFSRTY

A0A6J1H6T9 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X2

1.6e-53

93.97

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVR  TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFELEGELSRFSRTY
        LK+ELEG  SRFSRTY
Subjt:  LKFELEGELSRFSRTY

A0A6J1H8G6 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1

2.2e-55

94.83

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFELEGELSRFSRTY
        LK+ELEG  SRFSRTY
Subjt:  LKFELEGELSRFSRTY

A0A6J1KX24 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1

6.4e-55

93.97

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFELEGELSRFSRTY
        LK+ELEG  SRFSR+Y
Subjt:  LKFELEGELSRFSRTY

SwissProt top hits

e value

%identity

Alignment

O08740 DNA-directed RNA polymerase II subunit RPB11

1.9e-24

45.87

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNII+ QL +D  VLFA Y++PHPL+++I++R+ T    SP +A+  AI DL  EL L
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFELEGEL
        L+    G +
Subjt:  LKFELEGEL

P52435 DNA-directed RNA polymerase II subunit RPB11-a

4.3e-24

48.04

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNII+ QL +D  VLFA Y++PHPL+++I++R+ T    SP +A+  AI DL  EL L
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LK
        L+
Subjt:  LK

Q32P79 DNA-directed RNA polymerase II subunit RPB11

4.3e-24

48.04

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNII+ QL +D  VLFA Y++PHPL+++I++R+ T    SP +A+  AI DL  EL L
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LK
        L+
Subjt:  LK

Q38859 DNA-directed RNA polymerases II, IV and V subunit 11

1.7e-49

78.45

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFA YQLPHPLKY+I+VRIHT SQSSPMQAYNQAINDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFELEGELSRFSRTY
        LK + E E+++FS  +
Subjt:  LKFELEGELSRFSRTY

Q86JJ5 DNA-directed RNA polymerase II subunit rpb11

2.5e-24

48.04

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MN PDR+E FV+P+GAKKV+  RDTKI NA+ F + +EDHTIGN+IRMQL  D +++FA Y++PHPL++ + +RI T + ++P++   +++  L +E   
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LK
        L+
Subjt:  LK

Arabidopsis top hits

e value

%identity

Alignment

AT3G52090.1 DNA-directed RNA polymerase, RBP11-like

1.2e-50

78.45

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFA YQLPHPLKY+I+VRIHT SQSSPMQAYNQAINDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFELEGELSRFSRTY
        LK + E E+++FS  +
Subjt:  LKFELEGELSRFSRTY

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like

7.0e-46

62.33

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVR--------------------------
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFA YQLPHPLKY+I+VR                          
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVR--------------------------

Query:  ----IHTASQSSPMQAYNQAINDLDKELDLLKFELEGELSRFSRTY
            IHT SQSSPMQAYNQAINDLDKELD LK + E E+++FS  +
Subjt:  ----IHTASQSSPMQAYNQAINDLDKELDLLKFELEGELSRFSRTY

Sequences

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CDS sequence

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ATGAATGTCCCCGATCGCTACGAGCGCTTCGTCGTCCCCGAGGGCGCCAAGAAGGTTTCATACGAGAGAGACACGAAGATCATGAACGCGGCGACCTTTATATTGGAGAG
AGAGGATCACACCATTGGAAACATCATCCGCATGCAACTTCACAGAGACGATAATGTGCTGTTTGCTGCGTATCAGCTTCCTCATCCTCTAAAGTACAGAATACTTGTCC
GGATACACACGGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATTTGGACAAGGAGCTTGACCTTTTGAAATTTGAGCTCGAGGGCGAACTTTCA
AGATTCTCGAGGACCTATTAG

mRNA sequence

Show/hide mRNA sequence

AACGATGAATGTCCCCGATCGCTACGAGCGCTTCGTCGTCCCCGAGGGCGCCAAGAAGGTTTCATACGAGAGAGACACGAAGATCATGAACGCGGCGACCTTTATATTGG
AGAGAGAGGATCACACCATTGGAAACATCATCCGCATGCAACTTCACAGAGACGATAATGTGCTGTTTGCTGCGTATCAGCTTCCTCATCCTCTAAAGTACAGAATACTT
GTCCGGATACACACGGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATTTGGACAAGGAGCTTGACCTTTTGAAATTTGAGCTCGAGGGCGAACT
TTCAAGATTCTCGAGGACCTATTAGTTTGCCTTCAAAGAAAACCAGGTGGAAGTTCTGTTATCTGACCATTATAGAATTTCGATTCTTTGCATATGTGCTTCAACTCAAT
AAATTCGAGTTGGAAATGGAATGCCAAAAATAAGATTTACAGCCCTTGTATTCGTTTGCATTCTTTCATTTTTTTCGATGACAGTTCAAAATTTTATTATAAAAAAAGAC
GATCATTTTCCGTTAGTATTAATTAGAAAATAAACTATATTTAGGTTGGGAGATATTCGAAGATATTTTAAGAAAAAAGTATTATCT

Protein sequence

Show/hide protein sequence

MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDLLKFELEGELS
RFSRTY

Lcy05g004470 (gene) of Sponge gourd (P93075) v1 genome