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Lcy05g004520 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g004520
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr05:4084721..4085298
RNA-Seq ExpressionLcy05g004520
SyntenyLcy05g004520
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.0e-1133.64Show/hide
Query:  RSSSSTSAAVWSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRWPVSWLEAFAVCEGLKAL-STTSPPIRIEMDALQIVRLLLCK
        R     + A W PP    WKLN++A W      GGIGW++R   G ++ A C+ +     +++LE  A+CEGL+A+      PI +E D+L+ + LL  +
Subjt:  RSSSSTSAAVWSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRWPVSWLEAFAVCEGLKAL-STTSPPIRIEMDALQIVRLLLCK

Query:  EENVTDL
         ++ T++
Subjt:  EENVTDL
XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]3.4e-1136.08Show/hide
Query:  RSSSSTSAAVWSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRWPVSWLEAFAVCEGLKAL-STTSPPIRIEMDALQIVRLL
        R     + A W PP    WKLN+DA W       GIGW++R   G ++  GC+ +     +++LE  A+CEGL+A+      PI +E D+L+ + LL
Subjt:  RSSSSTSAAVWSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRWPVSWLEAFAVCEGLKAL-STTSPPIRIEMDALQIVRLL
XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]3.4e-1136.08Show/hide
Query:  RSSSSTSAAVWSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRWPVSWLEAFAVCEGLKAL-STTSPPIRIEMDALQIVRLL
        R     + A W PP    WKLN+DA W       GIGW++R   G ++  GC+ +     +++LE  A+CEGL+A+      PI +E D+L+ + LL
Subjt:  RSSSSTSAAVWSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRWPVSWLEAFAVCEGLKAL-STTSPPIRIEMDALQIVRLL
XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.0e-1548.96Show/hide
Query:  WSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRWPVSWLEAFAVCEGLKALSTTS--PPIRIEMDALQIVRLLLCKEENVT
        W PPP  IW LN+DA+WS++  RGGIGW+IR WDG IV AG + VE    V  LEA A+ EGL+ L+      P+ IE D+ ++  LL  K E++T
Subjt:  WSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRWPVSWLEAFAVCEGLKALSTTS--PPIRIEMDALQIVRLLLCKEENVT
XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]5.9e-1126.92Show/hide
Query:  YRGSNSENKEIPALLEFKLDDAPCRIPAPHSRSSS----------STSAAVWSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRW
        ++G +SE ++I  +++  + ++  R      +S++            + A W PP    WKLN+DA W      GGIGW++R   G ++ A C+ +    
Subjt:  YRGSNSENKEIPALLEFKLDDAPCRIPAPHSRSSS----------STSAAVWSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRW

Query:  PVSWLEAFAVCEGLKAL---------STTSPPIRIEMDALQIVRLLLCKEENVTDL
         +++LE  A+CEGL+A+              PI +E D+L+ + LL  + ++ T++
Subjt:  PVSWLEAFAVCEGLKAL---------STTSPPIRIEMDALQIVRLLLCKEENVTDL
TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134129.8e-1233.64Show/hide
Query:  RSSSSTSAAVWSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRWPVSWLEAFAVCEGLKAL-STTSPPIRIEMDALQIVRLLLCK
        R     + A W PP    WKLN++A W      GGIGW++R   G ++ A C+ +     +++LE  A+CEGL+A+      PI +E D+L+ + LL  +
Subjt:  RSSSSTSAAVWSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRWPVSWLEAFAVCEGLKAL-STTSPPIRIEMDALQIVRLLLCK

Query:  EENVTDL
         ++ T++
Subjt:  EENVTDL
A0A6J1DL64 uncharacterized protein LOC111022134 isoform X11.7e-1136.08Show/hide
Query:  RSSSSTSAAVWSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRWPVSWLEAFAVCEGLKAL-STTSPPIRIEMDALQIVRLL
        R     + A W PP    WKLN+DA W       GIGW++R   G ++  GC+ +     +++LE  A+CEGL+A+      PI +E D+L+ + LL
Subjt:  RSSSSTSAAVWSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRWPVSWLEAFAVCEGLKAL-STTSPPIRIEMDALQIVRLL
A0A6J1DNV9 uncharacterized protein LOC1110224031.5e-1548.96Show/hide
Query:  WSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRWPVSWLEAFAVCEGLKALSTTS--PPIRIEMDALQIVRLLLCKEENVT
        W PPP  IW LN+DA+WS++  RGGIGW+IR WDG IV AG + VE    V  LEA A+ EGL+ L+      P+ IE D+ ++  LL  K E++T
Subjt:  WSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRWPVSWLEAFAVCEGLKALSTTS--PPIRIEMDALQIVRLLLCKEENVT
A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X21.7e-1136.08Show/hide
Query:  RSSSSTSAAVWSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRWPVSWLEAFAVCEGLKAL-STTSPPIRIEMDALQIVRLL
        R     + A W PP    WKLN+DA W       GIGW++R   G ++  GC+ +     +++LE  A+CEGL+A+      PI +E D+L+ + LL
Subjt:  RSSSSTSAAVWSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRWPVSWLEAFAVCEGLKAL-STTSPPIRIEMDALQIVRLL
A0A6J1DSV1 uncharacterized protein LOC1110236082.8e-1126.92Show/hide
Query:  YRGSNSENKEIPALLEFKLDDAPCRIPAPHSRSSS----------STSAAVWSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRW
        ++G +SE ++I  +++  + ++  R      +S++            + A W PP    WKLN+DA W      GGIGW++R   G ++ A C+ +    
Subjt:  YRGSNSENKEIPALLEFKLDDAPCRIPAPHSRSSS----------STSAAVWSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRW

Query:  PVSWLEAFAVCEGLKAL---------STTSPPIRIEMDALQIVRLLLCKEENVTDL
         +++LE  A+CEGL+A+              PI +E D+L+ + LL  + ++ T++
Subjt:  PVSWLEAFAVCEGLKAL---------STTSPPIRIEMDALQIVRLLLCKEENVTDL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09775.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1)5.1e-0528.57Show/hide
Query:  PHSRSSSSTSAAVWSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRWPVSWLEAFAVCEGLK
        P+ R S  +    WSPPP+G  K N D+ + + R      W+IR  +G ++ +GC  +++ +     EA      L+
Subjt:  PHSRSSSSTSAAVWSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVERRWPVSWLEAFAVCEGLK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGAGGCTGGTCAGTTCCAGACCACTGTGAACAAACGAAATCCTACACAGCAACCACAGCCCAGATACAGAGGTTCTAATTCGGAGAATAAAGAAATACCTGCGCT
GCTAGAGTTCAAGCTGGACGATGCGCCTTGTCGGATCCCTGCTCCTCACTCTCGTTCCTCTTCTTCAACGAGTGCTGCTGTCTGGTCTCCGCCGCCGGACGGTATCTGGA
AGCTTAACAGCGATGCGACGTGGAGTGAAGCTCGAGGCCGCGGAGGAATTGGCTGGGTTATTAGGCGCTGGGACGGATCGATTGTGGCTGCGGGTTGCAAGAGCGTGGAA
CGGCGGTGGCCGGTCAGCTGGTTAGAGGCATTTGCTGTTTGTGAAGGCTTGAAAGCCTTGTCGACGACTTCTCCCCCTATCAGAATCGAGATGGATGCCCTTCAGATTGT
GCGTCTTCTTTTGTGCAAGGAGGAGAATGTCACAGATTTGGCAAGTTTATCAATGAAGCTGGAGCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGAGGCTGGTCAGTTCCAGACCACTGTGAACAAACGAAATCCTACACAGCAACCACAGCCCAGATACAGAGGTTCTAATTCGGAGAATAAAGAAATACCTGCGCT
GCTAGAGTTCAAGCTGGACGATGCGCCTTGTCGGATCCCTGCTCCTCACTCTCGTTCCTCTTCTTCAACGAGTGCTGCTGTCTGGTCTCCGCCGCCGGACGGTATCTGGA
AGCTTAACAGCGATGCGACGTGGAGTGAAGCTCGAGGCCGCGGAGGAATTGGCTGGGTTATTAGGCGCTGGGACGGATCGATTGTGGCTGCGGGTTGCAAGAGCGTGGAA
CGGCGGTGGCCGGTCAGCTGGTTAGAGGCATTTGCTGTTTGTGAAGGCTTGAAAGCCTTGTCGACGACTTCTCCCCCTATCAGAATCGAGATGGATGCCCTTCAGATTGT
GCGTCTTCTTTTGTGCAAGGAGGAGAATGTCACAGATTTGGCAAGTTTATCAATGAAGCTGGAGCCCTAA
Protein sequenceShow/hide protein sequence
MREAGQFQTTVNKRNPTQQPQPRYRGSNSENKEIPALLEFKLDDAPCRIPAPHSRSSSSTSAAVWSPPPDGIWKLNSDATWSEARGRGGIGWVIRRWDGSIVAAGCKSVE
RRWPVSWLEAFAVCEGLKALSTTSPPIRIEMDALQIVRLLLCKEENVTDLASLSMKLEP