; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy05g005450 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g005450
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptiontranscription initiation factor TFIID subunit 13
Genome locationChr05:5023288..5026045
RNA-Seq ExpressionLcy05g005450
SyntenyLcy05g005450
Gene Ontology termsGO:0006366 - transcription by RNA polymerase II (biological process)
GO:0006413 - translational initiation (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0009960 - endosperm development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003195 - Transcription initiation factor IID, subunit 13
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK18217.1 transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa]2.4e-6398.52Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD

XP_008451497.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo]2.4e-6398.52Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD

XP_022144527.1 transcription initiation factor TFIID subunit 13 [Momordica charantia]1.7e-6499.26Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ

XP_022991537.1 transcription initiation factor TFIID subunit 13 [Cucurbita maxima]5.3e-6397.06Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEE++K+DQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ

XP_038899215.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida]2.2e-6498.53Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYL+RKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+DQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ

TrEMBL top hitse value%identityAlignment
A0A1S3BRL0 transcription initiation factor TFIID subunit 131.2e-6398.52Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD

A0A5A7TZC2 Transcription initiation factor TFIID subunit 131.2e-6398.52Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD

A0A5D3D2Q2 Transcription initiation factor TFIID subunit 131.2e-6398.52Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD

A0A6J1CTQ0 transcription initiation factor TFIID subunit 138.0e-6599.26Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ

A0A6J1JWI2 transcription initiation factor TFIID subunit 132.6e-6397.06Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEE++K+DQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ

SwissProt top hitse value%identityAlignment
P61216 Transcription initiation factor TFIID subunit 133.9e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q148M7 Transcription initiation factor TFIID subunit 133.9e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q15543 Transcription initiation factor TFIID subunit 133.9e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q5R9W6 Transcription initiation factor TFIID subunit 133.9e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q6NQH4 Transcription initiation factor TFIID subunit 138.9e-3765.08Show/hide
Query:  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLN
        N P+A +SS  ++   G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVEY+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLN
Subjt:  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLN

Query:  RSTELLSMNEELKQARRAFEIDEDKL
        R  ELL+M EELKQAR+AF++DE +L
Subjt:  RSTELLSMNEELKQARRAFEIDEDKL

Arabidopsis top hitse value%identityAlignment
AT1G02680.1 TBP-associated factor 136.3e-3865.08Show/hide
Query:  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLN
        N P+A +SS  ++   G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVEY+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLN
Subjt:  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLN

Query:  RSTELLSMNEELKQARRAFEIDEDKL
        R  ELL+M EELKQAR+AF++DE +L
Subjt:  RSTELLSMNEELKQARRAFEIDEDKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAATCCATCTGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCGTCCCAGCCCTCTGAAACTTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTGCAGCA
CATGATGTATGGTTTTGGAGATGACCCCAATCCCCTTCCAGAGTCTGTAGCACTTATGGAGGACATAGTTGTGGAGTACATCACTGAACTTGTGTATAAAGCCCAGGAAA
TTGGATCAAAAAGGGGGAAACTATCTGTGGAAGACTTTTTGTATTTAATGCGCAAGGACCCACGCAAACTTAACCGTTCAACCGAACTGCTGTCAATGAACGAAGAGCTG
AAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAAGAGGACAAGTTGGATCAGTAG
mRNA sequenceShow/hide mRNA sequence
GTGACTCGAACTCTCCGTCTCCGATTGTGAATATGAACAATCCATCTGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCGTCCCAGCCCTCTGAAACTTCTTTTAAGCGC
AAAAGAGGGGTTTTTCAGAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACCCCAATCCCCTTCCAGAGTCTGTAGCACTTATGGAGGACATAGTTGTGGAGTA
CATCACTGAACTTGTGTATAAAGCCCAGGAAATTGGATCAAAAAGGGGGAAACTATCTGTGGAAGACTTTTTGTATTTAATGCGCAAGGACCCACGCAAACTTAACCGTT
CAACCGAACTGCTGTCAATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAAGAGGACAAGTTGGATCAG
TAGGGTTACATCAGAAATGAAAGTATCATATAAAGATATTTTGGGGGTCATTTGCTGCACAGACAAGGTTCATCTCAATCTGGTTTCTTGTCATATAATGAATGAGTCAA
CAGACAGGTCTTTGAACTATCTGTCTTGACCTTTTGTCTGCAGCCCAAAGCCTCCATGGTAGGCAGAGCAAAGCAAGCAACTAGTTTTAACTTTTAACAAGGGTTATTTT
GTTTTTTCTGCTTAGTGGCAATTAGTGTAGTTTAATCCCCTTCCCATTATCCCTAACCTACTTATAAAGGTGGGGGCTTCCCTATTGTATACACAATCCTTTTGGAATTA
ATGAAATAACATCTCTTCTTAACGTTTCA
Protein sequenceShow/hide protein sequence
MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEEL
KQARRAFEIDEDKLKKAFEEEDKLDQ