CuGenDBv2

Gene ID	Lcy05g005990
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Nucleolar protein 16
Genome location	Chr05:5574664..5576319
RNA-Seq Expression	Lcy05g005990
Synteny	Lcy05g005990
Gene Ontology terms	GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component)
InterPro domains	IPR019002 - Ribosome biogenesis protein Nop16

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7014368.1 hypothetical protein SDJN02_24545, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.3e-95

94.3

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Query:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDP
        MGRSRRKYKRSR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESD LQVPPS PPSDDP
Subjt:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHS-LDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKR+ GKSAPLKPLTTIQRVHVGRL+E+YGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHS LDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHS-LDKNPLILTR

XP_022954094.1 uncharacterized protein LOC111456462 [Cucurbita moschata]

3.0e-96

94.82

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Query:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDP
        MGRSRRKYKRSR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESD LQVPPS PPSDDP
Subjt:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHS-LDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKR+DGKSAPLKPLTTIQRVHVGRL+E+YGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHS LDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHS-LDKNPLILTR

XP_022991747.1 uncharacterized protein LOC111488281 [Cucurbita maxima]

2.7e-97

95.85

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Query:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDP
        MGRSRRKYKRSR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPS PPSDDP
Subjt:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHS-LDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRL+E+YGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHS LDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHS-LDKNPLILTR

XP_023547523.1 uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]

1.0e-96

95.34

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Query:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDP
        MGRSRRKYKRSR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPS PPSDDP
Subjt:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYH-SLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRL+E+YGDD+ERMFMDTKLNSMQHSVATLEKLCKRYH  LDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYH-SLDKNPLILTR

XP_038898931.1 nucleolar protein 16 [Benincasa hispida]

2.7e-97

94.82

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Query:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDP
        MGRSRRKYKRSRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWD+KA VIHNYKSFGV+SNPNLLSVRSRTDHIVESDSLQVPPSQPPSD+P
Subjt:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHS-LDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPL+PLTTIQRVHVGRL+E+YGDDYERMFMDTKLNSMQHSVATLEKLCKRYHS LDKNPLIL R
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHS-LDKNPLILTR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BSM4 Nucleolar protein 16

2.0e-93

92.23

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Query:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDP
        MGRSRRKYK+SRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQV    PPSDDP
Subjt:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHS-LDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPL+PLTT+QRVHVG+L+E+YGDDY+RMFMDTKLNSMQHSVATLEKLCKRYHS LDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHS-LDKNPLILTR

A0A5A7VLA5 Nucleolar protein 16

2.0e-93

92.23

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Query:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDP
        MGRSRRKYK+SRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQV    PPSDDP
Subjt:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHS-LDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPL+PLTT+QRVHVG+L+E+YGDDY+RMFMDTKLNSMQHSVATLEKLCKRYHS LDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHS-LDKNPLILTR

A0A6J1GRW5 Nucleolar protein 16

1.5e-96

94.82

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Query:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDP
        MGRSRRKYKRSR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESD LQVPPS PPSDDP
Subjt:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHS-LDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKR+DGKSAPLKPLTTIQRVHVGRL+E+YGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHS LDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHS-LDKNPLILTR

A0A6J1JMQ4 Nucleolar protein 16

1.3e-97

95.85

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Query:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDP
        MGRSRRKYKRSR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPS PPSDDP
Subjt:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHS-LDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRL+E+YGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHS LDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHS-LDKNPLILTR

A0A6J1L083 Nucleolar protein 16

8.9e-94

92.19

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Query:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDP
        MGRSRRKYKRSRPKV+VGLPKR+PNVFKPSFCMPPKLRSLL EQFEEDP WDEKASVI+NYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQ PSDD 
Subjt:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKR+DGKS PLKPLTTIQRVHVGRL+E+YG+DYERMFMDTKLNSMQHSV TLEKLCKRYHS  KNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSLDKNPLILTR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G02870.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

2.9e-65

63.78

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Query:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPS-QPPSDD
        M RSRRKY+ SR KV+V LPK+NPN+FKP+F  PPKLR+L+    ++ P WD++ASVI NYKSFGV+SNPNLL +R+RTDH+++ DSL VPP  +PP+DD
Subjt:  MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPS-QPPSDD

Query:  P---DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSL-DKNPLILT
        P   +     SGS++EEDDLKTALGK+RKDGKSAPL+PLTT+QR H+ RLVE++GDD E M+ D KLNSMQHSVATL KLC RY    DKNP++++
Subjt:  P---DSVLDSSGSDVEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSL-DKNPLILT

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGACGGTCTCGAAGAAAGTACAAGAGATCTCGGCCAAAAGTCAAGGTCGGCCTGCCCAAAAGAAACCCCAATGTTTTCAAGCCATCCTTCTGCATGCCGCCGAAGCT
CCGCTCCTTGCTCGCCGAACAATTCGAAGAAGATCCCACATGGGACGAGAAAGCCAGTGTCATTCACAACTACAAGTCCTTCGGTGTTCTTTCTAACCCTAATTTGCTCA
GCGTTCGTTCCCGAACTGATCACATCGTTGAGAGCGACTCTCTCCAGGTCCCGCCGTCTCAGCCGCCCTCCGATGACCCTGATTCTGTGCTGGATTCTTCTGGTAGCGAT
GTCGAGGAGGACGATTTGAAAACAGCTCTGGGAAAGAAGCGCAAAGATGGGAAATCTGCTCCTCTAAAACCTTTAACCACAATTCAACGTGTTCATGTTGGTAGGCTAGT
TGAGAGATATGGAGATGATTATGAGAGGATGTTCATGGATACAAAGCTGAACTCAATGCAACATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATATCACAGTTTAG
ATAAGAATCCATTGATATTGACTCGTTAA

mRNA sequence

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CCAAATGCGTTCTTCTTCTTCTTCATCTTCTACGTCTAAACCCTAGCCACCAATTTCTCTTTCTCCTTTCAATTCACAGAGCCACGAAGAGAGATGGGACGGTCTCGAAG
AAAGTACAAGAGATCTCGGCCAAAAGTCAAGGTCGGCCTGCCCAAAAGAAACCCCAATGTTTTCAAGCCATCCTTCTGCATGCCGCCGAAGCTCCGCTCCTTGCTCGCCG
AACAATTCGAAGAAGATCCCACATGGGACGAGAAAGCCAGTGTCATTCACAACTACAAGTCCTTCGGTGTTCTTTCTAACCCTAATTTGCTCAGCGTTCGTTCCCGAACT
GATCACATCGTTGAGAGCGACTCTCTCCAGGTCCCGCCGTCTCAGCCGCCCTCCGATGACCCTGATTCTGTGCTGGATTCTTCTGGTAGCGATGTCGAGGAGGACGATTT
GAAAACAGCTCTGGGAAAGAAGCGCAAAGATGGGAAATCTGCTCCTCTAAAACCTTTAACCACAATTCAACGTGTTCATGTTGGTAGGCTAGTTGAGAGATATGGAGATG
ATTATGAGAGGATGTTCATGGATACAAAGCTGAACTCAATGCAACATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATATCACAGTTTAGATAAGAATCCATTGATA
TTGACTCGTTAAAGATGTTATCGAAACGCCCCATCATCTTTCAGATTGTTTTGTTACAAGAGGTGAAATCAGATGAGGTATGATAATGAAGTTCAATAGAGCAAATATTG
TTTGAACACAAATGTATGAGGCTTGAAAGATGGCTCATTCTCTTGCTTGCAGCTGTTTTCTAACTTTCAAGGAAATGCTCATAATTTTATCCCATGTTTAGGTAGTGGGA
TCTAGAGCATTTTGATTTGAGGAAACTGAATATTTTGCAAGAATTTTAGGTTGTATGCAATATTTAAACCAATAGCCTACTTACCTTTTGGGTTGCCAGTTCAGGCAAAT
TCCGAAATGCATTTTTGATATGTTTAACCAATGAAATTGATGTTTGAAC

Protein sequence

Show/hide protein sequence

MGRSRRKYKRSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQPPSDDPDSVLDSSGSD
VEEDDLKTALGKKRKDGKSAPLKPLTTIQRVHVGRLVERYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSLDKNPLILTR

Lcy05g005990 (gene) of Sponge gourd (P93075) v1 genome