; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy05g007090 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g007090
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description40S ribosomal protein S19
Genome locationChr05:6831871..6833961
RNA-Seq ExpressionLcy05g007090
SyntenyLcy05g007090
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001266 - Ribosomal protein S19e
IPR018277 - Ribosomal protein S19e, conserved site
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578553.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia]1.4e-7497.2Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEM+I+DVDPKGGR+ITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

KAG6593129.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]2.9e-7598.6Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEM+I+DVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022923365.1 40S ribosomal protein S19-3-like [Cucurbita moschata]6.4e-7597.9Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEM+I+DVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022938991.1 40S ribosomal protein S19-3 [Cucurbita moschata]1.4e-7497.2Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEM+I+DVDPKGGR+ITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022954406.1 40S ribosomal protein S19-3-like [Cucurbita moschata]2.9e-7598.6Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEM+I+DVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

TrEMBL top hitse value%identityAlignment
A0A6J1EBL3 40S ribosomal protein S19-3-like3.1e-7597.9Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEM+I+DVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1H7M6 40S ribosomal protein S19-3-like1.4e-7598.6Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEM+I+DVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1JTL0 40S ribosomal protein S19-3-like3.1e-7597.9Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEM+I+DVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1JTW8 40S ribosomal protein S19-3-like1.4e-7598.6Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEM+I+DVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1JX06 40S ribosomal protein S19-36.9e-7597.2Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEM+I+DVDPKGGR+ITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

SwissProt top hitse value%identityAlignment
P40978 40S ribosomal protein S194.0e-6482.14Show/hide
Query:  ATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIA
        +TARTVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYDPDWYY RAAS+ARKIYLR G+GVG F++IYGG +RNGSRPPHFC+SSGAI+
Subjt:  ATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIA

Query:  RHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVV
        R+ILQQLQ+M IIDVDPKGGR ITS GRRDLDQVAGR+ V
Subjt:  RHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVV

Q94613 40S ribosomal protein S191.4e-4556.72Show/hide
Query:  TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHIL
        +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+PDWY++RAAS+ R +Y+R   G+G+F++IYGG +R G+ P HFC+++G+I+R +L
Subjt:  TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHIL

Query:  QQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRI
        Q L+ + I++ DP GGRR+TS GRRDLD++A +I
Subjt:  QQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRI

Q9FNP8 40S ribosomal protein S19-32.1e-6884.51Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHILQQLQ M+I+D+D KGGR+ITSSG+RDLDQVAGRI  A
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVA

Q9LF30 40S ribosomal protein S19-21.3e-6786.33Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAASMARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRI
        ARHILQQL+ MSI+++D KGGRRITSSG+RDLDQVAGRI
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRI

Q9SGA6 40S ribosomal protein S19-12.7e-6883.22Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQL+ M+I+++D KGGRRITSSG+RDLDQVAGRI V P
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

Arabidopsis top hitse value%identityAlignment
AT3G02080.1 Ribosomal protein S19e family protein1.9e-6983.22Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQL+ M+I+++D KGGRRITSSG+RDLDQVAGRI V P
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP

AT5G15520.1 Ribosomal protein S19e family protein9.5e-6986.33Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAASMARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRI
        ARHILQQL+ MSI+++D KGGRRITSSG+RDLDQVAGRI
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRI

AT5G61170.1 Ribosomal protein S19e family protein1.5e-6984.51Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHILQQLQ M+I+D+D KGGR+ITSSG+RDLDQVAGRI  A
Subjt:  ARHILQQLQEMSIIDVDPKGGRRITSSGRRDLDQVAGRIVVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTGCTAGGACCGTCAAGGATGTCTCTCCTCATGAGTTCGTGAAGGCCTATGCCGCTCATCTCAAGAGATCCGGAAAGGTTGAACTTCCACCATGGACGGATAT
TGTTAAGACTGCAAGATTCAAAGAGCTTGCTCCTTACGACCCTGATTGGTATTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTTG
GGGCATTTAAGCGGATTTATGGTGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTTTGCGAAAGCAGTGGTGCCATCGCCCGTCACATTCTACAACAGTTGCAGGAG
ATGAGCATTATTGATGTCGACCCAAAGGGTGGAAGGAGAATCACCTCAAGCGGTCGACGGGATCTTGATCAAGTCGCTGGCAGGATTGTTGTTGCCCCTTGA
mRNA sequenceShow/hide mRNA sequence
TGAGAAAGGCGGAAACCCTAGTTCTGCGATCGGAGCTTTTGCCGGCCTTTGCTCACTGAATTCAACAGCCATGGCCACTGCTAGGACCGTCAAGGATGTCTCTCCTCATG
AGTTCGTGAAGGCCTATGCCGCTCATCTCAAGAGATCCGGAAAGGTTGAACTTCCACCATGGACGGATATTGTTAAGACTGCAAGATTCAAAGAGCTTGCTCCTTACGAC
CCTGATTGGTATTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTTGGGGCATTTAAGCGGATTTATGGTGGAAGCAAGAGGAACGG
AAGTCGCCCTCCACACTTTTGCGAAAGCAGTGGTGCCATCGCCCGTCACATTCTACAACAGTTGCAGGAGATGAGCATTATTGATGTCGACCCAAAGGGTGGAAGGAGAA
TCACCTCAAGCGGTCGACGGGATCTTGATCAAGTCGCTGGCAGGATTGTTGTTGCCCCTTGATTGATCAGTTACCTGTTTTGTTAATTAGAGACTTATGTTTTGCTGATG
AGATACAATTTCTTATGCGCCATTAAAATTTTGGATTTAGCTGTTGAAAGATTTTCCAGATGAAGATGGTTACTCATGTTTTCTCACGTGATTCGTTATAAGTTTTTTCT
TGGTTTTAGTAAGATGTTTCCAATATTTTATCAACAGTGACTTTGATGCTAAGCCTACAGAATTTTTGCATTTAGAGATTGTTATCATCATCATTCTTATTCGTGGGGGT
TGAGATTTTCCTGGTCTTTTTTTTTTTTTTAATAAGATTTTCCTGGTCTTT
Protein sequenceShow/hide protein sequence
MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE
MSIIDVDPKGGRRITSSGRRDLDQVAGRIVVAP