; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy05g007780 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g007780
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionPSII 6.1 kDa protein
Genome locationChr05:7646197..7647678
RNA-Seq ExpressionLcy05g007780
SyntenyLcy05g007780
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059706.1 photosystem II reaction center W protein [Cucumis melo var. makuwa]1.1e-6095.65Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRP-LPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAAAVRTSLVQNRP LP+ASPAPFLLGLP+LGKKGGVRCSMEGK NGEVENKSSNL MGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRP-LPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWIL GVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

KAG6575946.1 Photosystem II reaction center W protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.6e-5991.24Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAA VR+SLVQNRPLPAASPAPFLLGLP+LGKKGGVRCSMEGK NG+VENKSS LGMGASL+AAA AA+MSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWIL GVFG IWAFYI+YTSTLEEDEESGLSL
Subjt:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_004146953.1 photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sativus]1.1e-6094.89Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAA VRTSLVQNR LP+ASPAPFLLGLP+LGKKGGVRCSMEGK NGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWIL GVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_008451280.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis melo]1.3e-6196.38Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRP-LPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAAAVRTSLVQNRP LP+ASPAPFLLGLP+LGKKGGVRCSMEGK NGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRP-LPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWIL GVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_038900227.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]1.2e-6296.35Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAA A  RTSLVQNRPLPAASPAPFLLGLP+LGKKGGVRCSMEGK NGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0K4V6 PSII 6.1 kDa protein5.4e-6194.89Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAA VRTSLVQNR LP+ASPAPFLLGLP+LGKKGGVRCSMEGK NGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWIL GVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A1S3BQI5 PSII 6.1 kDa protein6.4e-6296.38Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRP-LPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAAAVRTSLVQNRP LP+ASPAPFLLGLP+LGKKGGVRCSMEGK NGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRP-LPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWIL GVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A5D3DRC0 PSII 6.1 kDa protein5.4e-6195.65Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRP-LPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAAAVRTSLVQNRP LP+ASPAPFLLGLP+LGKKGGVRCSMEGK NGEVENKSSNL MGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRP-LPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWIL GVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A6J1GQI7 PSII 6.1 kDa protein3.9e-5990.51Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAA VR+SLVQNRPLPAASP+PFLLGLP+LGKKGGVRCSMEGK NG+VENKSS LGMGASL+AAA AA+MSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWIL GVFG IWAFYI+YTSTLEEDEESGLSL
Subjt:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A6J1H5C6 PSII 6.1 kDa protein7.3e-5889.05Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
        MAAV SA+AAAVR+SLVQNRPLPAASP  FLLGLP+LGK+GGVRC ++GK NGEVENKS NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWIL GVFG IW FYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic7.8e-3361.7Show/hide
Query:  MAAVTSAAA--AAVRTSLVQNRPLPAASPAPFLLGLPSLG-KKGGVRCSMEGKTNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGL
        MA+ T++A+  +A R +L+    +  ++P   +LGLP +G KKGGVRCSME K     +   S +G G S  A AA  A MS+PAMALVDER+STEGTGL
Subjt:  MAAVTSAAA--AAVRTSLVQNRPLPAASPAPFLLGLPSLG-KKGGVRCSMEGKTNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGL

Query:  PFGLSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        PFGLSNNLLGWILFGVFGLIW F+ VYTS+LEEDEESGLSL
Subjt:  PFGLSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic2.0e-3662.59Show/hide
Query:  MAAVTSAAAAAV--RTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF
        MA +T++++A++  R SLV N  +  +S    +LGLPS+ K+  V CS+E K +      ++N  MGASL+AAA AAT+S+PAMALVDER+STEGTGLPF
Subjt:  MAAVTSAAAAAV--RTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        GLSNNLLGWILFGVFGLIWA Y VY S LEEDEESGLSL
Subjt:  GLSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic8.1e-2251.47Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGG--VRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF
        MA V++AAA +V    V   P          LGLP +  +    VRC+   +        ++  G GASL+A A  A   +PAMALVDER+STEGTGL  
Subjt:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGG--VRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESG
        GLSNNLLGWIL GVFGLIW+ Y +YTS LEEDEESG
Subjt:  GLSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic1.6e-0940Show/hide
Query:  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWAFYIVYTSTLE--EDEESGLSL
        S +    ++++   A   + PA ALVDER++ +GTG PFG+++ +LGW+L GVFG +WA + +    L   ED + GL L
Subjt:  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWAFYIVYTSTLE--EDEESGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W5.6e-3461.7Show/hide
Query:  MAAVTSAAA--AAVRTSLVQNRPLPAASPAPFLLGLPSLG-KKGGVRCSMEGKTNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGL
        MA+ T++A+  +A R +L+    +  ++P   +LGLP +G KKGGVRCSME K     +   S +G G S  A AA  A MS+PAMALVDER+STEGTGL
Subjt:  MAAVTSAAA--AAVRTSLVQNRPLPAASPAPFLLGLPSLG-KKGGVRCSMEGKTNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGL

Query:  PFGLSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        PFGLSNNLLGWILFGVFGLIW F+ VYTS+LEEDEESGLSL
Subjt:  PFGLSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTCACCTCCGCCGCCGCCGCCGCCGTGCGCACTTCTCTGGTCCAGAACCGCCCCCTCCCGGCGGCTTCACCCGCCCCATTCCTTCTTGGGTTGCCTTCTTT
GGGGAAGAAAGGAGGAGTGAGGTGTTCTATGGAAGGAAAGACAAATGGAGAAGTAGAAAACAAGTCGAGCAACTTGGGGATGGGCGCATCGTTGATAGCTGCAGCGTGTG
CTGCGACGATGTCGAGCCCAGCCATGGCTTTGGTGGATGAGAGATTGAGCACCGAAGGGACTGGACTTCCATTCGGTTTGAGCAACAATCTTCTTGGTTGGATTCTCTTT
GGGGTTTTTGGTCTCATATGGGCATTCTACATCGTTTACACTTCTACTCTTGAAGAGGATGAGGAATCAGGCTTATCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
CTTTTGTATGATATAGAAAGAAACATGAGAGTGACGTGTTAGCAAAATCTCATATTGGAAGTCCACGTAGGAGTAAGCTATTGGCTAAAAGAGGATGATATGACACGTGT
ACAAATTCAATTGGGCAAAAGTAGATAAAGGATATGTAATGAATGGCTGTCCCCTAATCTTAGCTTTGTGTGGTGGCAGTGGCACTCAGCTCTTGGCTTCAACACCAACA
AATAATATTAATCTTTACAAACCCTCTGATCTTCAACTGCCCCAATTGATCATTCATTTTCCTCCCAAACTTCAAGACACCAAATGGCCGCCGTCACCTCCGCCGCCGCC
GCCGCCGTGCGCACTTCTCTGGTCCAGAACCGCCCCCTCCCGGCGGCTTCACCCGCCCCATTCCTTCTTGGGTTGCCTTCTTTGGGGAAGAAAGGAGGAGTGAGGTGTTC
TATGGAAGGAAAGACAAATGGAGAAGTAGAAAACAAGTCGAGCAACTTGGGGATGGGCGCATCGTTGATAGCTGCAGCGTGTGCTGCGACGATGTCGAGCCCAGCCATGG
CTTTGGTGGATGAGAGATTGAGCACCGAAGGGACTGGACTTCCATTCGGTTTGAGCAACAATCTTCTTGGTTGGATTCTCTTTGGGGTTTTTGGTCTCATATGGGCATTC
TACATCGTTTACACTTCTACTCTTGAAGAGGATGAGGAATCAGGCTTATCTCTTTAAGCCAAACTTGTCGTATTATATTATTGTTGTTGTTGTTGTGGATATTTGCCTTT
TGGCTTGAACTGTGGAAGCTTTTGAATTCGTATCATCGAAGACTTTTGTTGGAATATTGATGTAGAAAGAAGTAAAAGCGGTTCAAAACTACTGCATTTCATTAGTCAAA
CATTTTCACCGTGTTTCTCTTTCTATATTAACTTAGTAAATAACAAATGTGTTTGGATG
Protein sequenceShow/hide protein sequence
MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILF
GVFGLIWAFYIVYTSTLEEDEESGLSL