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Lcy05g008140 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g008140
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description3'-5' exonuclease domain-containing protein
Genome locationChr05:8218909..8219436
RNA-Seq ExpressionLcy05g008140
SyntenyLcy05g008140
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG9457797.1 hypothetical protein H6P81_002305 [Aristolochia fimbriata]1.3e-0631.88Show/hide
Query:  SNRRNEDRV-LISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPRNFRR--SNMTFHHLA-EEL
        SNR  E+ V L+ LC G  CLI++  L+  +     L  FL  P  TFVG+ +  D + +   +   V + V+L+ LA  R  R   +      LA + L
Subjt:  SNRRNEDRV-LISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPRNFRR--SNMTFHHLA-EEL

Query:  GISIKKDKKIWFN--DLENVSLKQVKYASIHAFISASI
        G+ ++K K++  +  D + + L+Q++YA + AF+S  I
Subjt:  GISIKKDKKIWFN--DLENVSLKQVKYASIHAFISASI

TQD99054.1 hypothetical protein C1H46_015321 [Malus baccata]1.7e-0633.81Show/hide
Query:  STSNRRNEDRVLISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPR---NFRRSNMTFHHLAEE
        S SN  N     + LC G  CLI++  L+      SRL  FL  P  TFVG+ +  D R +   +   V++ V+L+ L   R   + +R+       A+ 
Subjt:  STSNRRNEDRVLISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPR---NFRRSNMTFHHLAEE

Query:  LGISIKKDKKIWFNDLEN--VSLKQVKYASIHAFISASI
        LG   +K K I  +  +N  +SL Q+KYA I AF+S  I
Subjt:  LGISIKKDKKIWFNDLEN--VSLKQVKYASIHAFISASI

XP_009775108.1 PREDICTED: Werner Syndrome-like exonuclease [Nicotiana sylvestris]2.7e-0730.07Show/hide
Query:  WSSDSTSNRRNEDRVLISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPRNFRRSNMT--FHHL
        W  + T+  +N     I LC G  CLIY+  ++       RLR FL++ T  FVG+ +  D + +N  +   V KKV+L++ A     ++  +T     L
Subjt:  WSSDSTSNRRNEDRVLISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPRNFRRSNMT--FHHL

Query:  AEEL-GISIKKDKKIWFN--DLENVSLKQVKYASIHAFISASI
         +++ G  I K K +  +  D   +S KQ+ YA + A++S  I
Subjt:  AEEL-GISIKKDKKIWFN--DLENVSLKQVKYASIHAFISASI

XP_022147765.1 Werner Syndrome-like exonuclease, partial [Momordica charantia]8.3e-0937.06Show/hide
Query:  WSSDSTSNRRNEDRVLISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPRNFRRS--NMTFHHL
        W  +   +RRN    L  LC G  CLI++  L+   E    L +FL   T TFVG+ +++DAR +   +D  V   V+L+ +A  R  RR   N     L
Subjt:  WSSDSTSNRRNEDRVLISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPRNFRRS--NMTFHHL

Query:  AEE-LGISIKKDKKIWFN--DLENVSLKQVKYASIHAFISASI
        A E LG  I K K +  +  D E ++  QV YASI AF+S  I
Subjt:  AEE-LGISIKKDKKIWFN--DLENVSLKQVKYASIHAFISASI

XP_028945620.1 Werner Syndrome-like exonuclease [Malus domestica]1.7e-0633.81Show/hide
Query:  STSNRRNEDRVLISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPR---NFRRSNMTFHHLAEE
        S SN  N     + LC G  CLI++  L+      SRL  FL  P  TFVG+ +  D R +   +   V++ V+L+ L   R   + +R+       A+ 
Subjt:  STSNRRNEDRVLISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPR---NFRRSNMTFHHLAEE

Query:  LGISIKKDKKIWFNDLEN--VSLKQVKYASIHAFISASI
        LG   +K K I  +  +N  +SL Q+KYA I AF+S  I
Subjt:  LGISIKKDKKIWFNDLEN--VSLKQVKYASIHAFISASI

TrEMBL top hitse value%identityAlignment
A0A1S4AGG9 Werner Syndrome-like exonuclease1.4e-0632.82Show/hide
Query:  LISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPR--NFRRSNMTFHHLAEE-LGISIKKDKKI
        L+ LC G  CL+++  L+  +     L  FL  P  TFVG+ +  DA  +      FV   V+L RLA      +    M    +A+  LG  ++K +K+
Subjt:  LISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPR--NFRRSNMTFHHLAEE-LGISIKKDKKI

Query:  WFN--DLENVSLKQVKYASIHAFISASIEKR
          +  D EN+S +QV+Y +I AF+S  I K+
Subjt:  WFN--DLENVSLKQVKYASIHAFISASIEKR

A0A1S4AGV1 Werner Syndrome-like exonuclease1.3e-0730.07Show/hide
Query:  WSSDSTSNRRNEDRVLISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPRNFRRSNMT--FHHL
        W  + T+  +N     I LC G  CLIY+  ++       RLR FL++ T  FVG+ +  D + +N  +   V KKV+L++ A     ++  +T     L
Subjt:  WSSDSTSNRRNEDRVLISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPRNFRRSNMT--FHHL

Query:  AEEL-GISIKKDKKIWFN--DLENVSLKQVKYASIHAFISASI
         +++ G  I K K +  +  D   +S KQ+ YA + A++S  I
Subjt:  AEEL-GISIKKDKKIWFN--DLENVSLKQVKYASIHAFISASI

A0A1U7W900 Werner Syndrome-like exonuclease1.3e-0730.07Show/hide
Query:  WSSDSTSNRRNEDRVLISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPRNFRRSNMT--FHHL
        W  + T+  +N     I LC G  CLIY+  ++       RLR FL++ T  FVG+ +  D + +N  +   V KKV+L++ A     ++  +T     L
Subjt:  WSSDSTSNRRNEDRVLISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPRNFRRSNMT--FHHL

Query:  AEEL-GISIKKDKKIWFN--DLENVSLKQVKYASIHAFISASI
         +++ G  I K K +  +  D   +S KQ+ YA + A++S  I
Subjt:  AEEL-GISIKKDKKIWFN--DLENVSLKQVKYASIHAFISASI

A0A540MJV8 3'-5' exonuclease domain-containing protein8.3e-0733.81Show/hide
Query:  STSNRRNEDRVLISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPR---NFRRSNMTFHHLAEE
        S SN  N     + LC G  CLI++  L+      SRL  FL  P  TFVG+ +  D R +   +   V++ V+L+ L   R   + +R+       A+ 
Subjt:  STSNRRNEDRVLISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPR---NFRRSNMTFHHLAEE

Query:  LGISIKKDKKIWFNDLEN--VSLKQVKYASIHAFISASI
        LG   +K K I  +  +N  +SL Q+KYA I AF+S  I
Subjt:  LGISIKKDKKIWFNDLEN--VSLKQVKYASIHAFISASI

A0A6J1D121 Werner Syndrome-like exonuclease4.0e-0937.06Show/hide
Query:  WSSDSTSNRRNEDRVLISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPRNFRRS--NMTFHHL
        W  +   +RRN    L  LC G  CLI++  L+   E    L +FL   T TFVG+ +++DAR +   +D  V   V+L+ +A  R  RR   N     L
Subjt:  WSSDSTSNRRNEDRVLISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPRNFRRS--NMTFHHL

Query:  AEE-LGISIKKDKKIWFN--DLENVSLKQVKYASIHAFISASI
        A E LG  I K K +  +  D E ++  QV YASI AF+S  I
Subjt:  AEE-LGISIKKDKKIWFN--DLENVSLKQVKYASIHAFISASI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCCAAAATTTGGTCGTCGGACTCAACGTCAAATAGGAGAAATGAGGATCGGGTACTGATCTCACTGTGTGCGGGAGCCGATTGTCTGATTTACAAGATGGTTTT
GGTTGGACCAGAAGAAGCATCATCTCGGCTCCGATACTTCCTAAGGCGTCCTACAGTCACGTTCGTTGGGCTGAATCTCAACAAAGACGCTCGGCCTATCAACCGAACAT
TTGATTGCTTCGTGAAGAAAAAGGTTGAATTAAAACGTCTGGCGACACCTAGAAACTTCAGGAGAAGCAATATGACATTTCACCATCTTGCGGAAGAACTAGGAATTTCA
ATCAAGAAGGACAAGAAGATCTGGTTCAATGACTTGGAGAACGTTAGCCTCAAACAGGTGAAATATGCATCCATACATGCGTTTATCTCGGCTTCCATTGAGAAGCGTAG
GCTTGGATGA
mRNA sequenceShow/hide mRNA sequence
GACGAGTTCAAAATTCATACTGTAGTAACAAACATCAATCGAGAAGTTCGAAGGTGGGTAAGCAAGGTTTTTAGAAAAATGGCAGCCAAAATTTGGTCGTCGGACTCAAC
GTCAAATAGGAGAAATGAGGATCGGGTACTGATCTCACTGTGTGCGGGAGCCGATTGTCTGATTTACAAGATGGTTTTGGTTGGACCAGAAGAAGCATCATCTCGGCTCC
GATACTTCCTAAGGCGTCCTACAGTCACGTTCGTTGGGCTGAATCTCAACAAAGACGCTCGGCCTATCAACCGAACATTTGATTGCTTCGTGAAGAAAAAGGTTGAATTA
AAACGTCTGGCGACACCTAGAAACTTCAGGAGAAGCAATATGACATTTCACCATCTTGCGGAAGAACTAGGAATTTCAATCAAGAAGGACAAGAAGATCTGGTTCAATGA
CTTGGAGAACGTTAGCCTCAAACAGGTGAAATATGCATCCATACATGCGTTTATCTCGGCTTCCATTGAGAAGCGTAGGCTTGGATGA
Protein sequenceShow/hide protein sequence
MAAKIWSSDSTSNRRNEDRVLISLCAGADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPRNFRRSNMTFHHLAEELGIS
IKKDKKIWFNDLENVSLKQVKYASIHAFISASIEKRRLG