CuGenDBv2

Gene ID	Lcy05g008720
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	U2 small nuclear ribonucleoprotein A'
Genome location	Chr05:8835259..8841733
RNA-Seq Expression	Lcy05g008720
Synteny	Lcy05g008720
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005737 - cytoplasm (cellular component) GO:0015030 - Cajal body (cellular component) GO:0005515 - protein binding (molecular function) GO:0030620 - U2 snRNA binding (molecular function)
InterPro domains	IPR001611 - Leucine-rich repeat IPR003603 - U2A'/phosphoprotein 32 family A, C-terminal IPR032675 - Leucine-rich repeat domain superfamily IPR044640 - U2 small nuclear ribonucleoprotein A'

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004140564.3 U2 small nuclear ribonucleoprotein A' [Cucumis sativus]

9.3e-134

93.01

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Query:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRL VDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVE ASKPVEEKQT NVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DD TMSD GDEE+VT       NDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQE

XP_022148876.1 U2 small nuclear ribonucleoprotein A' [Momordica charantia]

1.3e-140

96.14

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Query:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRL VDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTFVPGEVENASKP EEKQTSNVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV NTTKDTDD TMSDG DE+NV+KDVKEQ NDES PMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQ

XP_022960458.1 U2 small nuclear ribonucleoprotein A' [Cucurbita moschata]

3.8e-143

97.2

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Query:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRL VDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTS +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV NTTKDTDD TMSDGGDEENV+KD KEQSNDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQE

XP_023005060.1 U2 small nuclear ribonucleoprotein A' [Cucurbita maxima]

1.1e-142

96.85

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Query:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRL VDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTS +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV NTTKDTDD T+SDGGDEENV+KD KEQSNDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQE

XP_038907085.1 U2 small nuclear ribonucleoprotein A' [Benincasa hispida]

9.3e-142

96.5

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Query:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRL VDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVK FVPGEVENASKPVEEKQTSNVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQE
        APT EQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLL+DNTVPNTTK+TDD TMSD GDEENV+KDVKEQSNDE TPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CAU7 U2 small nuclear ribonucleoprotein A'

1.4e-132

92.31

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Query:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRL VDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV GEVE ASKPVEEKQT NVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT PN TKD DD T S  GDEE+VT       NDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQE

A0A6J1D6P1 U2 small nuclear ribonucleoprotein A'

6.5e-141

96.14

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Query:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRL VDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTFVPGEVENASKP EEKQTSNVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV NTTKDTDD TMSDG DE+NV+KDVKEQ NDES PMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQ

A0A6J1H905 U2 small nuclear ribonucleoprotein A'

1.8e-143

97.2

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Query:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRL VDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTS +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV NTTKDTDD TMSDGGDEENV+KD KEQSNDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQE

A0A6J1KWC8 U2 small nuclear ribonucleoprotein A'

5.3e-143

96.85

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Query:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRL VDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTS +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV NTTKDTDD T+SDGGDEENV+KD KEQSNDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQE

E5GB46 U2 small nuclear ribonucleoprotein a

1.4e-132

92.31

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Query:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRL VDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV GEVE ASKPVEEKQT NVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT PN TKD DD T S  GDEE+VT       NDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQE

SwissProt top hits

e value

%identity

Alignment

P09661 U2 small nuclear ribonucleoprotein A'

7.6e-54

52.94

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Query:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+L  +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVENASKPVEEKQTSN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA  +F  K   + AK      KTF PG    A  P ++K+   
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVENASKPVEEKQTSN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
           P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

P43333 U2 small nuclear ribonucleoprotein A'

1.9e-97

79.92

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Query:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+L  DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN PYLNRLGTLLINNNRITRINPN+GEFLPKLH+LVLTNNRL
Subjt:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS
        VNLVEIDPLAS+PKLQ+LSLLDNNITKK NYRLYVIHKLKSLRVLDF K++ KER EA +LFSSKE EEE KK S +     EV+  S+  E  +T  V 
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
        APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL

P57784 U2 small nuclear ribonucleoprotein A'

6.4e-53

52.52

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Query:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+L  +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVENASKPVEEKQTSN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA  +F  K   + AK      KTF PG    A  P ++K+   
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVENASKPVEEKQTSN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
           P+   + AIK AI N+ TL EV RL+  L+SGQ+P
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

Q4R8Y8 U2 small nuclear ribonucleoprotein A'

7.6e-54

52.94

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Query:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+L  +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVENASKPVEEKQTSN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA  +F  K   + AK      KTF PG    A  P ++K+   
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVENASKPVEEKQTSN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
           P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

Q9BLB6 Probable U2 small nuclear ribonucleoprotein A'

3.8e-45

44.96

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Query:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRL  +L  + P F N++  RE++LRG KI VIEN+G T DQFD IDL+DN+I KL+N P  +RL TL ++NNRI  I P+I   LP L TL LTNN +
Subjt:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEE--EAKKESVKTFVPGEVENASKPVEEKQTSN
          L +I+PLA   KL++++ + N IT K NYR+Y+I+KL ++RV+DF +VR  ER  A+ +F  K  ++  +A ++SV T  P E+E       E  +  
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEE--EAKKESVKTFVPGEVENASKPVEEKQTSN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
         +  T E    IK AI N+++L EV  L+  L SG++P
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

Arabidopsis top hits

e value

%identity

Alignment

AT1G04210.1 Leucine-rich repeat protein kinase family protein

7.4e-04

38.37

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Query:  IDLSDNEIVKLEN-MPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITKKPNY
        +DLS N+I  L N + YL+ L  L + +NR+  ++P +   L  L +L ++NNRL  L  +D L  +P+LQ L+L  N   K P+Y
Subjt:  IDLSDNEIVKLEN-MPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITKKPNY

AT1G09760.1 U2 small nuclear ribonucleoprotein A

1.4e-98

79.92

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Query:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+L  DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN PYLNRLGTLLINNNRITRINPN+GEFLPKLH+LVLTNNRL
Subjt:  MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS
        VNLVEIDPLAS+PKLQ+LSLLDNNITKK NYRLYVIHKLKSLRVLDF K++ KER EA +LFSSKE EEE KK S +     EV+  S+  E  +T  V 
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
        APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL

Sequences

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CDS sequence

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ATGGTGAGACTCGCAGTCGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCAATTAAGGAGCGAGAGCTGGACCTTCGAGGTAACAAGATAGCAGTGATAGAAAACCT
AGGTGCTACGGAGGACCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTGAAGCTGGAAAATATGCCATATCTTAATCGATTGGGCACATTGCTGATCAATAATA
ATAGAATCACTCGTATCAATCCAAACATTGGAGAGTTCTTGCCAAAATTACATACATTAGTTCTTACGAACAACAGACTTGTGAACTTGGTAGAGATTGACCCGTTGGCA
TCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACGAAGAAGCCAAACTATAGATTGTATGTCATTCACAAGTTAAAGTCACTCAGGGTGCTTGATTT
CAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCAAGGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCAAAAAAGGAATCTGTGAAGACGTTCGTTCCAGGTGAAG
TAGAGAATGCATCCAAACCTGTGGAGGAGAAACAAACTTCTAATGTGTCTGCACCAACACCGGAGCAAATTATAGCTATTAAGGCGGCCATTGTCAATTCCCAAACTCTT
GAAGAGGTTGCGAGATTAGAACAGGCGCTAAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTTTGGAAGATAATACTGTGCCAAATACCACAAAAGATACAGATGATAC
GACAATGTCTGATGGTGGAGATGAAGAAAATGTTACTAAGGATGTAAAAGAACAATCGAATGATGAATCTACACCAATGGAGCAGGAACAGTAG

mRNA sequence

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GTCGGTCTGAAATTTGGACGTTGTCTTCTTTCGATCCGCGCAGCGCCTGCCTTGCGGTCGGCTGTCGTCGACCATTTCTTCCCTTCCCTTCGCCCTAAAGCCCTAAACCC
CGTCGTCTTCGTCGTCGTCGTCGTCGTCCAGTGAACTGAAGTCAGAAGAACATGGTGAGACTCGCAGTCGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCAATTAA
GGAGCGAGAGCTGGACCTTCGAGGTAACAAGATAGCAGTGATAGAAAACCTAGGTGCTACGGAGGACCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTGAAGC
TGGAAAATATGCCATATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGTATCAATCCAAACATTGGAGAGTTCTTGCCAAAATTACATACATTA
GTTCTTACGAACAACAGACTTGTGAACTTGGTAGAGATTGACCCGTTGGCATCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACGAAGAAGCCAAA
CTATAGATTGTATGTCATTCACAAGTTAAAGTCACTCAGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCAAGGAATTTATTTTCATCAAAAGAAG
TTGAAGAAGAGGCAAAAAAGGAATCTGTGAAGACGTTCGTTCCAGGTGAAGTAGAGAATGCATCCAAACCTGTGGAGGAGAAACAAACTTCTAATGTGTCTGCACCAACA
CCGGAGCAAATTATAGCTATTAAGGCGGCCATTGTCAATTCCCAAACTCTTGAAGAGGTTGCGAGATTAGAACAGGCGCTAAAGTCAGGTCAGTTACCTGCAGATTTGAA
TCTTTTGGAAGATAATACTGTGCCAAATACCACAAAAGATACAGATGATACGACAATGTCTGATGGTGGAGATGAAGAAAATGTTACTAAGGATGTAAAAGAACAATCGA
ATGATGAATCTACACCAATGGAGCAGGAACAGTAGAATATTGTTGCTCTTACTACTTGGTGGCTCATCAATTAGCATTCAACGATGGTTATCCTGTCGTGCTGATTTGTA
GACATTTTTGAAACCTTTCGAGAAATCTAGGCATGACACTTCCCAGCCTGGGGATGTTAGACGTCTCCTTTGCCTCTCTTTTTTAGAGTTGGTTCTCTCTCTTTTTATTC
TTCTTCTAGTCTCTTTTCTTTTCCTTTTTTGGGTAAAGAATTGTTTAAATATATGTACGGATCTATTGGCAATGGCATAGATATCAGGACTTGAAGTGGTTTATGTTGTA
TTTACAAAACTTATGATGCCTTTGAAATTTTCTTCCTTTAAATATATATGTACGGATATTTGGCATAGACATCAGAACTTG

Protein sequence

Show/hide protein sequence

MVRLAVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLA
SLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTL
EEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQEQ

Lcy05g008720 (gene) of Sponge gourd (P93075) v1 genome