CuGenDBv2

Gene ID	Lcy05g009070
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reductase NYC
Genome location	Chr05:9226282..9228913
RNA-Seq Expression	Lcy05g009070
Synteny	Lcy05g009070
Gene Ontology terms	GO:0010304 - PSII associated light-harvesting complex II catabolic process (biological process) GO:0015996 - chlorophyll catabolic process (biological process) GO:0009536 - plastid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0034256 - chlorophyll(ide) b reductase activity (molecular function)
InterPro domains	IPR002347 - Short-chain dehydrogenase/reductase SDR IPR036291 - NAD(P)-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6587961.1 putative chlorophyll(ide) b reductase NYC1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-27

90.14

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Query:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW
        INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLC RE MRVMR+QAKGGHIFNMDGAGSGGSSTPL  ++
Subjt:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW

KAG7021850.1 putative chlorophyll(ide) b reductase NYC1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

1.7e-27

90.14

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Query:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW
        INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLC RE MRVMR+QAKGGHIFNMDGAGSGGSSTPL  ++
Subjt:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW

XP_022145058.1 probable chlorophyll(ide) b reductase NYC1, chloroplastic [Momordica charantia]

1.7e-27

90.14

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Query:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW
        INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLC RE MRVMR+QAKGGHIFNMDGAGSGGSSTPL  ++
Subjt:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW

XP_023529434.1 probable chlorophyll(ide) b reductase NYC1, chloroplastic [Cucurbita pepo subsp. pepo]

1.7e-27

90.14

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Query:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW
        INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLC RE MRVMR+QAKGGHIFNMDGAGSGGSSTPL  ++
Subjt:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW

XP_038880096.1 probable chlorophyll(ide) b reductase NYC1, chloroplastic [Benincasa hispida]

1.7e-27

90.14

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Query:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW
        INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLC RE MRVMR+QAKGGHIFNMDGAGSGGSSTPL  ++
Subjt:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CJ66 probable chlorophyll(Ide) b reductase NYC1, chloroplastic

3.2e-27

88.73

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Query:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW
        INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLC RE MRVMR+Q KGGHIFNMDGAGSGGSSTPL  ++
Subjt:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW

A0A5D3DZ70 Putative chlorophyll(Ide) b reductase NYC1

3.2e-27

88.73

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Query:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW
        INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLC RE MRVMR+Q KGGHIFNMDGAGSGGSSTPL  ++
Subjt:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW

A0A6J1CUX5 probable chlorophyll(Ide) b reductase NYC1, chloroplastic

8.4e-28

90.14

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Query:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW
        INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLC RE MRVMR+QAKGGHIFNMDGAGSGGSSTPL  ++
Subjt:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW

A0A6J1EZT2 probable chlorophyll(Ide) b reductase NYC1, chloroplastic

1.1e-27

90.14

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Query:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW
        INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLC RE MRVMR QAKGGHIFNMDGAGSGGSSTPL  ++
Subjt:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW

A0A6J1HLL1 probable chlorophyll(Ide) b reductase NYC1, chloroplastic

1.1e-27

90.14

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Query:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW
        INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLC RE MRVMR QAKGGHIFNMDGAGSGGSSTPL  ++
Subjt:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW

SwissProt top hits

e value

%identity

Alignment

Q5N800 Probable chlorophyll(ide) b reductase NYC1, chloroplastic

3.4e-26

77.46

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Query:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW
        INNAGTNKGFRPL+ F+DEDI+QI+STNLVGSLLC RE M VM+ Q KGGH+FNMDGAGSGGSSTPL  ++
Subjt:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW

Q84ST4 Chlorophyll(ide) b reductase NOL, chloroplastic

3.0e-14

46.75

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Query:  INNAGTNK-GFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLWKFIAY
        INNAG+N   ++PL++ +DE + ++++TN +G ++C RE + +MR+Q +GGHIFN+DGAGS G  TP     +F AY
Subjt:  INNAGTNK-GFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLWKFIAY

Q8LEU3 Chlorophyll(ide) b reductase NOL, chloroplastic

6.0e-15

50.65

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Query:  INNAGTNK-GFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLWKFIAY
        INNAG+N   F+PL + +DED+ +++ TN +G +LC RE M +M  Q++GGHIFN+DGAGS G  TP     +F AY
Subjt:  INNAGTNK-GFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLWKFIAY

Q93ZA0 Probable chlorophyll(ide) b reductase NYC1, chloroplastic

6.4e-25

76.06

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Query:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW
        INNAGTNKGFRPLL+FT+EDITQI+STNL+GS+LC R  M VM  Q  GGHIFNMDGAGSGGSSTPL  ++
Subjt:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW

Arabidopsis top hits

e value

%identity

Alignment

AT4G13250.1 NAD(P)-binding Rossmann-fold superfamily protein

4.6e-26

76.06

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Query:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW
        INNAGTNKGFRPLL+FT+EDITQI+STNL+GS+LC R  M VM  Q  GGHIFNMDGAGSGGSSTPL  ++
Subjt:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW

AT4G13250.2 NAD(P)-binding Rossmann-fold superfamily protein

4.6e-26

76.06

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Query:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW
        INNAGTNKGFRPLL+FT+EDITQI+STNL+GS+LC R  M VM  Q  GGHIFNMDGAGSGGSSTPL  ++
Subjt:  INNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLW

AT5G04900.1 NYC1-like

4.3e-16

50.65

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Query:  INNAGTNK-GFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLWKFIAY
        INNAG+N   F+PL + +DED+ +++ TN +G +LC RE M +M  Q++GGHIFN+DGAGS G  TP     +F AY
Subjt:  INNAGTNK-GFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLWKFIAY

Sequences

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CDS sequence

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mRNA sequence

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ATGGATCAAAATGAGATAAACAATGCGGGCACGAATAAAGGCTTTAGACCCTTACTGCAGTTCACGGATGAAGATATTACTCAGATTCTCTCAACAAACCTCGTTGGTTC
TCTTCTTTGTATTCGAGAAGACATGCGTGTAATGAGGGATCAGGCTAAAGGAGGGCACATATTTAACATGGACGGTGCTGGATCTGGAGGTTCAAGTACCCCTTTGGCGG
GGCTGTGGAAGTTCATTGCATACTGTGAAATGTTAATGTAGTTTTGTATGGAGTGGAGGGTTTAATCAATATCATTTGTTACAATTGATGAATGATACTCTTATTGTTGC
AAAACGGAAAGATTTTGATGTCTTCAATGCATTGGATGTCATGGAGAACGAATCCTTCCTGAAGGAACTAATTATCGGATTCGGCACGCTTTGAAACCAAGTGAACTTGG
GCTTGTTCTGCTATATTTGGATTTGTTACTGTTTTGGTTTGAACTGTGAACCAGAAAATATTGGTCATTTTTTAATGGGTGGCTAGGTTTGATGATGCATTCTTCCTTTG
TTTTGTTCTTCTGGTCAACAGCAAAGCACTAAGCACTAAACGTCTGGAGTATTTAGAGAAAAAACTTTGTCGGATAATGTAAAATGTTATGCAGATTTT

Protein sequence

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MDQNEINNAGTNKGFRPLLQFTDEDITQILSTNLVGSLLCIREDMRVMRDQAKGGHIFNMDGAGSGGSSTPLAGLWKFIAYCEMLM

Lcy05g009070 (gene) of Sponge gourd (P93075) v1 genome