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Lcy05g010410 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g010410
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr05:11323161..11324210
RNA-Seq ExpressionLcy05g010410
SyntenyLcy05g010410
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAM01179.2 Putative retroelement [Oryza sativa Japonica Group]3.8e-2026.35Show/hide
Query:  NGMWNEALIKRSFMEEDASIILNIPINPDLKEDVIIWHLDQKGNFTVKSAYRLGRALSQGSEASTS----NAQHQESLFDWSTKDYCEKIWKAERGD---
        +G W+   I + F+  DA  ILNI ++  L++D I WH D+ G F+V+SAY L  AL+   E S+S    N++   +L+  +       +     GD   
Subjt:  NGMWNEALIKRSFMEEDASIILNIPINPDLKEDVIIWHLDQKGNFTVKSAYRLGRALSQGSEASTS----NAQHQESLFDWSTKDYCEKIWKAERGD---

Query:  ------KIEEQNITKSLIILWRIWNQRNAIYKMNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPV--------------NVARDEVQMQSIWITPPPGSW
              + + ++    L++LWRIW+ RN I      P  +  K+ I+ Y++        P   P               ++ R    +   W+ P PGS 
Subjt:  ------KIEEQNITKSLIILWRIWNQRNAIYKMNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPV--------------NVARDEVQMQSIWITPPPGSW

Query:  KLNCDAAWSEQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGLR-SIPTSSQAVNVEADAIQVVRL
        KLN D ++ E + +GGI  +LR+ TG ++ A+   +         E  A  +GL  ++  +   + +E D + ++ L
Subjt:  KLNCDAAWSEQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGLR-SIPTSSQAVNVEADAIQVVRL

ABB46931.2 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]3.8e-2026.35Show/hide
Query:  NGMWNEALIKRSFMEEDASIILNIPINPDLKEDVIIWHLDQKGNFTVKSAYRLGRALSQGSEASTS----NAQHQESLFDWSTKDYCEKIWKAERGD---
        +G W+   I + F+  DA  ILNI ++  L++D I WH D+ G F+V+SAY L  AL+   E S+S    N++   +L+  +       +     GD   
Subjt:  NGMWNEALIKRSFMEEDASIILNIPINPDLKEDVIIWHLDQKGNFTVKSAYRLGRALSQGSEASTS----NAQHQESLFDWSTKDYCEKIWKAERGD---

Query:  ------KIEEQNITKSLIILWRIWNQRNAIYKMNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPV--------------NVARDEVQMQSIWITPPPGSW
              + + ++    L++LWRIW+ RN I      P  +  K+ I+ Y++        P   P               ++ R    +   W+ P PGS 
Subjt:  ------KIEEQNITKSLIILWRIWNQRNAIYKMNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPV--------------NVARDEVQMQSIWITPPPGSW

Query:  KLNCDAAWSEQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGLR-SIPTSSQAVNVEADAIQVVRL
        KLN D ++ E + +GGI  +LR+ TG ++ A+   +         E  A  +GL  ++  +   + +E D + ++ L
Subjt:  KLNCDAAWSEQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGLR-SIPTSSQAVNVEADAIQVVRL

TXG50387.1 hypothetical protein EZV62_022911 [Acer yangbiense]8.4e-2024.85Show/hide
Query:  HNNGMWNEALIKRSFMEEDASIILNIPINPDLKEDVIIWHLDQKGNFTVKSAYRLGRALSQGSEAST------------SNAQHQESLFDW---------
        H +G WN  LI+ SF+ +DAS+IL++P     ++D + WH D++G +TV+S Y++   L +G  +S+             N  ++  +F W         
Subjt:  HNNGMWNEALIKRSFMEEDASIILNIPINPDLKEDVIIWHLDQKGNFTVKSAYRLGRALSQGSEAST------------SNAQHQESLFDW---------

Query:  ---------STKDYCE--------------------KIWKAERGDKIEEQ------------------NITKSLIIL--WRIWNQRNAIYKMNQQPNQVQ
                    DYC+                    ++W+   GD + ++                  ++  +L+I+  WR+W  RN++   +       
Subjt:  ---------STKDYCE--------------------KIWKAERGDKIEEQ------------------NITKSLIIL--WRIWNQRNAIYKMNQQPNQVQ

Query:  LKQQIDKYLMEFINPTSPPSNLPVNVARDEV-QMQSIWITPPPGSWKLNCDAAWSEQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGL
        +   ID +  EF         L   +   EV   Q  W TP  G +K+NCDA++  +  + G+  I+RD+ G+ + A    +     V  LEA A  EG+
Subjt:  LKQQIDKYLMEFINPTSPPSNLPVNVARDEV-QMQSIWITPPPGSWKLNCDAAWSEQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGL

Query:  R-SIPTSSQAVNVEADAIQVVRLLNFQERDETQL
          +I      V +E+DA  V++LL+ Q    T+L
Subjt:  R-SIPTSSQAVNVEADAIQVVRLLNFQERDETQL

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.9e-1933.33Show/hide
Query:  DKIEEQNITKSLIILWRIWNQRNAIYKMNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPVN-----VARDEVQMQSIWITPPPGSWKLNCDAAWSEQEQQ
        DK  E+   +S+II W+IW  RN        P    ++  ID+Y++      +       N     + R E    + W  P   SWKLN +AAW      
Subjt:  DKIEEQNITKSLIILWRIWNQRNAIYKMNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPVN-----VARDEVQMQSIWITPPPGSWKLNCDAAWSEQEQQ

Query:  GGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGLRSI-PTSSQAVNVEADAIQVVRLLNFQERDETQL
        GGI WILRD  G ++ AS R I+    +++LE  AICEGLR+I     + +++E+D+++ + LL+ Q +D+T++
Subjt:  GGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGLRSI-PTSSQAVNVEADAIQVVRLLNFQERDETQL

XP_024042628.1 uncharacterized protein LOC112099434 [Citrus clementina]6.9e-2226.57Show/hide
Query:  NNGMWNEALIKRSFMEEDASIILNIPINPDLKEDVIIWHLDQKGNFTVKSAYRLGRALS--QGSEASTSNAQHQESLF-----------DWSTKDYCEKI
        N+  W EAL+   F++EDA  I+NIP+  +   D +IWH D+KG ++VKS Y++   +       +S +N    E++F            W    + E  
Subjt:  NNGMWNEALIKRSFMEEDASIILNIPINPDLKEDVIIWHLDQKGNFTVKSAYRLGRALS--QGSEASTSNAQHQESLF-----------DWSTKDYCEKI

Query:  WKAERGD----------KIEEQNITKSLIILWRIWNQRNAIYKMNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPVNVARDEVQMQSIWITPPPGSWKLN
              D          K+ + +     +  W IW  RN +    ++P   Q+     + L+E       PS L +  A  E +    W+ PPP  +K+N
Subjt:  WKAERGD----------KIEEQNITKSLIILWRIWNQRNAIYKMNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPVNVARDEVQMQSIWITPPPGSWKLN

Query:  CDAAWSEQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGLR-SIPTSSQAVNVEADAIQVVRLLNFQERDETQLF
         DAA  +++   G+  ++RD TGNI+ A+ +T +    VS+ EA A+  GL+ ++     ++ +E D+  V  L+N ++  + +++
Subjt:  CDAAWSEQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGLR-SIPTSSQAVNVEADAIQVVRLLNFQERDETQLF

TrEMBL top hitse value%identityAlignment
A0A5C7H0P0 Uncharacterized protein4.1e-2024.85Show/hide
Query:  HNNGMWNEALIKRSFMEEDASIILNIPINPDLKEDVIIWHLDQKGNFTVKSAYRLGRALSQGSEAST------------SNAQHQESLFDW---------
        H +G WN  LI+ SF+ +DAS+IL++P     ++D + WH D++G +TV+S Y++   L +G  +S+             N  ++  +F W         
Subjt:  HNNGMWNEALIKRSFMEEDASIILNIPINPDLKEDVIIWHLDQKGNFTVKSAYRLGRALSQGSEAST------------SNAQHQESLFDW---------

Query:  ---------STKDYCE--------------------KIWKAERGDKIEEQ------------------NITKSLIIL--WRIWNQRNAIYKMNQQPNQVQ
                    DYC+                    ++W+   GD + ++                  ++  +L+I+  WR+W  RN++   +       
Subjt:  ---------STKDYCE--------------------KIWKAERGDKIEEQ------------------NITKSLIIL--WRIWNQRNAIYKMNQQPNQVQ

Query:  LKQQIDKYLMEFINPTSPPSNLPVNVARDEV-QMQSIWITPPPGSWKLNCDAAWSEQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGL
        +   ID +  EF         L   +   EV   Q  W TP  G +K+NCDA++  +  + G+  I+RD+ G+ + A    +     V  LEA A  EG+
Subjt:  LKQQIDKYLMEFINPTSPPSNLPVNVARDEV-QMQSIWITPPPGSWKLNCDAAWSEQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGL

Query:  R-SIPTSSQAVNVEADAIQVVRLLNFQERDETQL
          +I      V +E+DA  V++LL+ Q    T+L
Subjt:  R-SIPTSSQAVNVEADAIQVVRLLNFQERDETQL

A0A6J1CP26 uncharacterized protein LOC1110134129.1e-2033.33Show/hide
Query:  DKIEEQNITKSLIILWRIWNQRNAIYKMNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPVN-----VARDEVQMQSIWITPPPGSWKLNCDAAWSEQEQQ
        DK  E+   +S+II W+IW  RN        P    ++  ID+Y++      +       N     + R E    + W  P   SWKLN +AAW      
Subjt:  DKIEEQNITKSLIILWRIWNQRNAIYKMNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPVN-----VARDEVQMQSIWITPPPGSWKLNCDAAWSEQEQQ

Query:  GGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGLRSI-PTSSQAVNVEADAIQVVRLLNFQERDETQL
        GGI WILRD  G ++ AS R I+    +++LE  AICEGLR+I     + +++E+D+++ + LL+ Q +D+T++
Subjt:  GGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGLRSI-PTSSQAVNVEADAIQVVRLLNFQERDETQL

A0A6J1DSV1 uncharacterized protein LOC1110236087.7e-1933.69Show/hide
Query:  DKIEEQNITKSLIILWRIWNQRN-AIYK-MNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPVNVARDEVQM--------QSIWITPPPGSWKLNCDAAWS
        DK  E+   +S+II W+IW  RN +I+K ++ +   +QL   ID+Y+   IN     +NL    A  ++ +         + W  P   SWKLN DAAW 
Subjt:  DKIEEQNITKSLIILWRIWNQRN-AIYK-MNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPVNVARDEVQM--------QSIWITPPPGSWKLNCDAAWS

Query:  EQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGLRSI---------PTSSQAVNVEADAIQVVRLLNFQERDETQL
             GGI WILRD  G ++ A  R I+    +++LE  AICEGLR+I             + +++E+D+++ + LL+ Q +D+T++
Subjt:  EQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGLRSI---------PTSSQAVNVEADAIQVVRLLNFQERDETQL

Q33AJ4 Retrotransposon protein, putative, unclassified1.8e-2026.35Show/hide
Query:  NGMWNEALIKRSFMEEDASIILNIPINPDLKEDVIIWHLDQKGNFTVKSAYRLGRALSQGSEASTS----NAQHQESLFDWSTKDYCEKIWKAERGD---
        +G W+   I + F+  DA  ILNI ++  L++D I WH D+ G F+V+SAY L  AL+   E S+S    N++   +L+  +       +     GD   
Subjt:  NGMWNEALIKRSFMEEDASIILNIPINPDLKEDVIIWHLDQKGNFTVKSAYRLGRALSQGSEASTS----NAQHQESLFDWSTKDYCEKIWKAERGD---

Query:  ------KIEEQNITKSLIILWRIWNQRNAIYKMNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPV--------------NVARDEVQMQSIWITPPPGSW
              + + ++    L++LWRIW+ RN I      P  +  K+ I+ Y++        P   P               ++ R    +   W+ P PGS 
Subjt:  ------KIEEQNITKSLIILWRIWNQRNAIYKMNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPV--------------NVARDEVQMQSIWITPPPGSW

Query:  KLNCDAAWSEQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGLR-SIPTSSQAVNVEADAIQVVRL
        KLN D ++ E + +GGI  +LR+ TG ++ A+   +         E  A  +GL  ++  +   + +E D + ++ L
Subjt:  KLNCDAAWSEQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGLR-SIPTSSQAVNVEADAIQVVRL

Q8S5K1 Putative retroelement1.8e-2026.35Show/hide
Query:  NGMWNEALIKRSFMEEDASIILNIPINPDLKEDVIIWHLDQKGNFTVKSAYRLGRALSQGSEASTS----NAQHQESLFDWSTKDYCEKIWKAERGD---
        +G W+   I + F+  DA  ILNI ++  L++D I WH D+ G F+V+SAY L  AL+   E S+S    N++   +L+  +       +     GD   
Subjt:  NGMWNEALIKRSFMEEDASIILNIPINPDLKEDVIIWHLDQKGNFTVKSAYRLGRALSQGSEASTS----NAQHQESLFDWSTKDYCEKIWKAERGD---

Query:  ------KIEEQNITKSLIILWRIWNQRNAIYKMNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPV--------------NVARDEVQMQSIWITPPPGSW
              + + ++    L++LWRIW+ RN I      P  +  K+ I+ Y++        P   P               ++ R    +   W+ P PGS 
Subjt:  ------KIEEQNITKSLIILWRIWNQRNAIYKMNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPV--------------NVARDEVQMQSIWITPPPGSW

Query:  KLNCDAAWSEQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGLR-SIPTSSQAVNVEADAIQVVRL
        KLN D ++ E + +GGI  +LR+ TG ++ A+   +         E  A  +GL  ++  +   + +E D + ++ L
Subjt:  KLNCDAAWSEQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGLR-SIPTSSQAVNVEADAIQVVRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.8e-0724.86Show/hide
Query:  DWSTKDYCEKIWKAERGDKIEEQNITKSLI--ILWRIWNQRNAIYKMNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPVNVARDEVQMQ-SIWITPPPGS
        +W+   Y    W      +I +     +L+  +LWR+W  RN +    ++ +  ++ ++     ME     S    L    +  +V+   S+    PP  
Subjt:  DWSTKDYCEKIWKAERGDKIEEQNITKSLI--ILWRIWNQRNAIYKMNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPVNVARDEVQMQ-SIWITPPPGS

Query:  W-KLNCDAAWSEQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGLRSIPT-SSQAVNVEADAIQVVRLLN
        W K N DA W  +  + GI WILR+ +G +L    R + R   V   E  A+   + ++   + + +  E+DA  +V LLN
Subjt:  W-KLNCDAAWSEQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGLRSIPT-SSQAVNVEADAIQVVRLLN

AT4G29090.1 Ribonuclease H-like superfamily protein1.8e-0724.32Show/hide
Query:  DWSTKDYCEKIWKAERGDKIEEQNITKSLI--ILWRIWNQRNAIYKMNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPVNVARDEVQMQSI--WITPPPG
        +W+   Y    W    G+   +      L+  +LWR+W  RN +    ++ N  ++ ++ +  L E+   T   S       + +V   S   W  PPP 
Subjt:  DWSTKDYCEKIWKAERGDKIEEQNITKSLI--ILWRIWNQRNAIYKMNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPVNVARDEVQMQSI--WITPPPG

Query:  SW-KLNCDAAWSEQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGLRSIPT-SSQAVNVEADAIQVVRLLNFQE
         W K N DA W+   ++ GI W+LR+  G +     R + +   V   E  A+   + S+       V  E+D+  ++ +LN  E
Subjt:  SW-KLNCDAAWSEQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSWLEAAAICEGLRSIPT-SSQAVNVEADAIQVVRLLNFQE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATAACAACGGCATGTGGAATGAAGCATTGATCAAGAGATCTTTTATGGAAGAGGATGCTAGCATTATCCTGAATATCCCGATTAACCCTGATCTGAAAGAGGATGT
GATTATTTGGCATTTAGACCAAAAGGGGAATTTCACAGTTAAAAGTGCTTATAGATTGGGTAGAGCGCTCAGCCAAGGATCTGAAGCATCCACATCAAATGCCCAACATC
AGGAATCACTGTTTGATTGGAGCACAAAGGACTATTGTGAGAAAATTTGGAAAGCTGAAAGGGGAGACAAAATAGAGGAACAAAATATAACCAAAAGCCTAATAATCCTT
TGGAGGATATGGAATCAGAGGAATGCAATCTATAAGATGAACCAACAGCCTAACCAAGTGCAGTTAAAGCAACAAATCGATAAGTACCTGATGGAATTCATAAATCCGAC
GAGCCCACCCTCGAATCTTCCAGTCAATGTCGCTCGCGATGAGGTGCAAATGCAATCAATTTGGATTACGCCGCCTCCTGGTTCGTGGAAATTAAATTGCGATGCAGCGT
GGAGTGAGCAAGAGCAACAAGGGGGGATCAGATGGATTCTCAGGGATTGGACTGGCAATATTCTGATTGCAAGCTATCGAACAATTAAACGCCGGTGGAAAGTTAGTTGG
CTAGAGGCGGCGGCTATTTGTGAAGGACTGCGATCAATTCCGACGAGTTCTCAAGCGGTAAATGTTGAGGCGGATGCCATTCAGGTGGTGCGACTCCTCAACTTCCAAGA
GAGAGATGAAACACAGTTGTTTAATTTTATTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCATAACAACGGCATGTGGAATGAAGCATTGATCAAGAGATCTTTTATGGAAGAGGATGCTAGCATTATCCTGAATATCCCGATTAACCCTGATCTGAAAGAGGATGT
GATTATTTGGCATTTAGACCAAAAGGGGAATTTCACAGTTAAAAGTGCTTATAGATTGGGTAGAGCGCTCAGCCAAGGATCTGAAGCATCCACATCAAATGCCCAACATC
AGGAATCACTGTTTGATTGGAGCACAAAGGACTATTGTGAGAAAATTTGGAAAGCTGAAAGGGGAGACAAAATAGAGGAACAAAATATAACCAAAAGCCTAATAATCCTT
TGGAGGATATGGAATCAGAGGAATGCAATCTATAAGATGAACCAACAGCCTAACCAAGTGCAGTTAAAGCAACAAATCGATAAGTACCTGATGGAATTCATAAATCCGAC
GAGCCCACCCTCGAATCTTCCAGTCAATGTCGCTCGCGATGAGGTGCAAATGCAATCAATTTGGATTACGCCGCCTCCTGGTTCGTGGAAATTAAATTGCGATGCAGCGT
GGAGTGAGCAAGAGCAACAAGGGGGGATCAGATGGATTCTCAGGGATTGGACTGGCAATATTCTGATTGCAAGCTATCGAACAATTAAACGCCGGTGGAAAGTTAGTTGG
CTAGAGGCGGCGGCTATTTGTGAAGGACTGCGATCAATTCCGACGAGTTCTCAAGCGGTAAATGTTGAGGCGGATGCCATTCAGGTGGTGCGACTCCTCAACTTCCAAGA
GAGAGATGAAACACAGTTGTTTAATTTTATTAAATAA
Protein sequenceShow/hide protein sequence
MHNNGMWNEALIKRSFMEEDASIILNIPINPDLKEDVIIWHLDQKGNFTVKSAYRLGRALSQGSEASTSNAQHQESLFDWSTKDYCEKIWKAERGDKIEEQNITKSLIIL
WRIWNQRNAIYKMNQQPNQVQLKQQIDKYLMEFINPTSPPSNLPVNVARDEVQMQSIWITPPPGSWKLNCDAAWSEQEQQGGIRWILRDWTGNILIASYRTIKRRWKVSW
LEAAAICEGLRSIPTSSQAVNVEADAIQVVRLLNFQERDETQLFNFIK