CuGenDBv2

Gene ID	Lcy05g011190
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RRM domain-containing protein
Genome location	Chr05:12756335..12760976
RNA-Seq Expression	Lcy05g011190
Synteny	Lcy05g011190
Gene Ontology terms	GO:0006396 - RNA processing (biological process) GO:0032991 - protein-containing complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6592987.1 hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sororia]

1.9e-105

85.71

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Query:  HLPLLKAPLPIFSSTGSCPSLSADHFVSPLRTDPSLSFHMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQ
        H   L++ +   ++TGSCP+L+  HFV PLRT  SLS HMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+ EPINSSQ
Subjt:  HLPLLKAPLPIFSSTGSCPSLSADHFVSPLRTDPSLSFHMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQ

Query:  CALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAEVEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQ
        CALVEMKD KEA SVISVIAQFPFMMSGMPRPVRA PAEVEMFDDRPIKPGRKISFVWL KDDPDFEVAKKMK +TQRHVAEAAFLLKQQLVEEEKLAKQ
Subjt:  CALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAEVEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQ

Query:  QQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD
        QQ+ALK NYKKYEIVE VM DGTARRLA RYNMRV+DD
Subjt:  QQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD

KAG7025396.1 hypothetical protein SDJN02_11891, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.9e-106

86.13

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Query:  HLPLLKAPLPIFSSTGSCPSLSADHFVSPLRTDPSLSFHMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQ
        H   L++ +   ++TGSCP+L+  HFVSPLRT  SLS HMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+ EPINSSQ
Subjt:  HLPLLKAPLPIFSSTGSCPSLSADHFVSPLRTDPSLSFHMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQ

Query:  CALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAEVEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQ
        CALVEMKD KEA SVISVIAQFPFMMSGMPRPVRA PAEVEMFDDRPIKPGRKISFVWL KDDPDFEVAKKMK +TQRHVAEAAFLLKQQLVEEEKLAKQ
Subjt:  CALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAEVEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQ

Query:  QQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD
        QQ+ALK NYKKYEIVE VM DGTARRLA RYNMRV+DD
Subjt:  QQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD

XP_023004840.1 uncharacterized protein LOC111498019 [Cucurbita maxima]

5.1e-95

91.96

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+ EPINSSQCALVEMKD KEA SVISVI+QFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD
        VEMFDDRPIKPGRKISFVWL K+DPDFEVAKKMK +TQRHVAEAAFLLKQQLVEEEKLAKQQQ+ALKGNYKKYEI+E VM DGTARRLA RYNMRV+DD
Subjt:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD

XP_023514768.1 uncharacterized protein LOC111778981 [Cucurbita pepo subsp. pepo]

1.8e-95

92.96

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+ EPINSSQCALVEMKD KEA SVISVIAQFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD
        VEMFDDRPIKPGRKISFVWL KDDPDFEVAKKMK +TQRHVAEAAFLLKQQLVEEEKLAKQQQ+ALK NYKKYEIVE VM DGTARRLA RYNMRV+DD
Subjt:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD

XP_038886330.1 uncharacterized protein LOC120076542 [Benincasa hispida]

6.7e-95

91.46

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGS  DEQ+A FEEKVKRTVYVDNLSP VTEPVLRTALDQFGTVVSVHFIPNY EPIN+SQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD
        VEMFDDRP+KPGRKISF WLEKDDPDFEVAKKMK +T++HVAEAAFLLK  L EEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLA RYNMRVSDD
Subjt:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAE7 RRM domain-containing protein

1.4e-90

86.43

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGS  DEQ+A FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPNY EPINSSQCALVEMKD KEAKSVI+VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD
        VEMFDDRP+KPGRKISF WLE DDPDFEVA+++KR++++HVAEAAFL+KQ + EEEKLAKQQQE LKGNYKKYEIV+SVMADGTARRLA  YNMR+SDD
Subjt:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD

A0A1S3B3J3 uncharacterized protein LOC103485592

5.7e-92

87.44

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGSA DEQ++ FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPNY EPINSSQCALVEMKD KEAKSVI+VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD
         EMFDDRP+KPGRKISF WLE DDPDFEVA+++KR+T++HVAEAAFLLKQ L EEEKLAKQQQE L+GNYKKYEIV+SVMADGTARRLA  YNMRVSDD
Subjt:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD

A0A6J1DB90 uncharacterized protein LOC111018537

6.6e-88

84.92

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGSAT+EQ+A FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPNY EP+NSSQCALVEMKDLKEAKSVISVIA+FPFM+SGMPRPVRARPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD
        VEMFDDRPIKPG KISF WL+++DPDF+VAKKMK  T++H AE AFLLKQQL+EEEKLAKQQQE LKGNYKK+EIVESVM DGTARRLA  Y+MRV DD
Subjt:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD

A0A6J1H6P8 uncharacterized protein LOC111460615

5.5e-95

91.96

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGSATDEQY KFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+ EPINSSQCALVEMKD KEA SVIS+IAQFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD
        VEMFDDRPIKPGRKISFVWL KDDPDFEVAKKMK +TQRHVAEAAFLLKQQLVEEEKLAKQQQ+ALK NYKKYEIVE VM DGTARRLA RYNMRV+DD
Subjt:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD

A0A6J1KVQ1 uncharacterized protein LOC111498019

2.5e-95

91.96

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+ EPINSSQCALVEMKD KEA SVISVI+QFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD
        VEMFDDRPIKPGRKISFVWL K+DPDFEVAKKMK +TQRHVAEAAFLLKQQLVEEEKLAKQQQ+ALKGNYKKYEI+E VM DGTARRLA RYNMRV+DD
Subjt:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G05970.1 RNA-binding (RRM/RBD/RNP motifs) family protein

7.2e-47

47.69

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
        M +  +  Y KF E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P       LVEM++ +  ++VIS ++Q PFM++GMPRPVRA  AE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMR
          MF D+P KPGR + F W++ +DPDF+ A+++KR+ ++H AE +F+LK  L E EKL+KQQ E    ++KK+E+++ ++ DG A++LA RY+++
Subjt:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMR

AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein

7.7e-49

48.21

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
        M +  +  Y KF E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P       LVEM++ +  ++VIS ++Q PFM++GMPRPVRA  AE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMR
          MF D+P KPGR + F W++ +DPDF+ A+++KR+ ++H AE +F+LK+QL E EKL+KQQ E    ++KK+E+++ ++ DG A++LA RY+++
Subjt:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCAGCGGTGACAAAGAGAGCACAGCAACGACGGCGACGGAAGGGATACGACAAGAAGAAAGGGAGAAAAATCGAAGGCTATGGTTTGAAGGAGAGGAGAAGTTCCCT
CTCTTCCTCCCTGTCCAAATTCAATCTTTTTCAGCCACTGGACACCAGCACCACCACCTCTCACCTTCCATTACTCAAAGCCCCACTCCCGATTTTCAGTTCTACTGGCT
CATGCCCCTCGCTTTCCGCTGATCATTTCGTTTCTCCTCTTCGGACTGATCCCTCTTTATCATTCCACATGGGATCAGCTACGGATGAGCAATATGCTAAGTTTGAGGAG
AAGGTAAAACGGACTGTCTATGTTGATAATCTCTCTCCCCAAGTGACTGAGCCTGTCTTGAGAACTGCTTTAGATCAGTTTGGGACTGTTGTTAGTGTCCATTTTATTCC
AAACTACGCAGAGCCAATTAATAGCTCTCAATGTGCTCTAGTGGAGATGAAGGATTTGAAGGAGGCGAAATCTGTCATCTCGGTGATAGCTCAGTTCCCCTTCATGATGT
CTGGAATGCCGAGACCAGTGAGGGCGCGCCCTGCCGAAGTGGAAATGTTTGATGATCGCCCTATAAAGCCTGGTAGGAAGATTAGCTTTGTCTGGTTGGAAAAGGATGAT
CCTGATTTTGAAGTGGCAAAGAAAATGAAGCGTGTTACTCAGAGACATGTCGCTGAAGCTGCATTCTTGCTCAAGCAACAACTGGTGGAAGAGGAGAAGCTTGCCAAGCA
GCAGCAAGAAGCACTGAAAGGAAACTACAAGAAATATGAGATTGTGGAAAGTGTAATGGCTGATGGAACCGCCCGCAGGTTAGCAAACCGATATAATATGCGAGTTTCAG
ATGATTAA

mRNA sequence

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Protein sequence

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MAAVTKRAQQRRRRKGYDKKKGRKIEGYGLKERRSSLSSSLSKFNLFQPLDTSTTTSHLPLLKAPLPIFSSTGSCPSLSADHFVSPLRTDPSLSFHMGSATDEQYAKFEE
KVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAEVEMFDDRPIKPGRKISFVWLEKDD
PDFEVAKKMKRVTQRHVAEAAFLLKQQLVEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLANRYNMRVSDD

Lcy05g011190 (gene) of Sponge gourd (P93075) v1 genome