; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy05g011650 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g011650
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptiontranscription factor IBH1
Genome locationChr05:13280833..13281449
RNA-Seq ExpressionLcy05g011650
SyntenyLcy05g011650
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575326.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. sororia]2.0e-4067.08Show/hide
Query:  MASESGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRR
        MAS+SG T + STSS LRLARTFLRSF+ IKSQ P I           P   EL+RRSRRIK+ AYSSMAR AGPR AWARALLFKL+TRARHRTL+ RR
Subjt:  MASESGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRR

Query:  RRSTTTIPRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAISQH-LSTN
        R       RSDD+V KLRRL+PGG++MDVCTLLEET  YI CL+ QVKVMKAI  H  STN
Subjt:  RRSTTTIPRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAISQH-LSTN

KAG7025295.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-4875Show/hide
Query:  MASESGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRR
        MASESG T MNS+SS LRLARTFLRSFSRIKS+RP        T   S  A EL+RRSRRIK+AAYSSMARVAGP+RAWARALLFKL TRARH TLM RR
Subjt:  MASESGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRR

Query:  RRSTTTIPRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAISQHLSTN
        RRST      DD V KLRRLLPGGD MDVCTLLEETA YIHCL+ QVKVM AI+ HLSTN
Subjt:  RRSTTTIPRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAISQHLSTN

XP_008464343.1 PREDICTED: transcription factor IBH1 [Cucumis melo]6.9e-4673.42Show/hide
Query:  SESGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRRRR
        S+S +TL+NSTSSR R ARTFLR FSRIKSQR       +AT   +P   +LKR+S+RIK+ AYSSMARVAGPRRAWARALLFKLQTR RHRTLMRR+RR
Subjt:  SESGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRRRR

Query:  STTTIPRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAIS-QHLST
         +T+    DDQV KLRRLLPGG+ MDVCTLLEETA+YIHCL+TQVKVMKAIS QHLST
Subjt:  STTTIPRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAIS-QHLST

XP_023005092.1 transcription factor IBH1 [Cucurbita maxima]1.2e-4571.88Show/hide
Query:  MASESGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRR
        MA ESG+T MNS+SS LRLARTFLRSFSRIKS+RP        T   S  A EL+RRSRRIK+AAYSSMARVAGP+R WARALLFKL TRARHRT M RR
Subjt:  MASESGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRR

Query:  RRSTTTIPRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAISQHLSTN
        R ST      DD V KLRRL+PGGD MDVCTLLEETA YIHCL+ QVKVM AI+ HLS N
Subjt:  RRSTTTIPRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAISQHLSTN

XP_023548405.1 transcription factor IBH1 [Cucurbita pepo subsp. pepo]3.1e-3865.22Show/hide
Query:  MASESGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRR
        MAS+SG T + STS+ LRLARTFLRSF+ IKSQ P I           P   ELKR+SRRIK+ AYSSMAR AGPR AWARALLFKL+ RARHRTL+ RR
Subjt:  MASESGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRR

Query:  RRSTTTIPRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAISQH-LSTN
        R        SDD+V KLRRL+PGG+ MDVC+LLEET  YI CL TQVKVMKAI  H  STN
Subjt:  RRSTTTIPRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAISQH-LSTN

TrEMBL top hitse value%identityAlignment
A0A0A0KDQ3 Uncharacterized protein1.1e-3664.29Show/hide
Query:  SESGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRRRR
        S+S +TL+NSTSSRL  AR                   T+AT   +P   +LKR+SRRIK+AAYSSMARVAG RRAWARALLF+L TR RH+TLMRR+RR
Subjt:  SESGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRRRR

Query:  STTTIPRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAISQH
         +T+   SDD V KLRRLLPGG+ MDVCTLLEETA+YIHCL+TQVKVMKAIS H
Subjt:  STTTIPRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAISQH

A0A1S3CLD3 transcription factor IBH13.4e-4673.42Show/hide
Query:  SESGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRRRR
        S+S +TL+NSTSSR R ARTFLR FSRIKSQR       +AT   +P   +LKR+S+RIK+ AYSSMARVAGPRRAWARALLFKLQTR RHRTLMRR+RR
Subjt:  SESGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRRRR

Query:  STTTIPRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAIS-QHLST
         +T+    DDQV KLRRLLPGG+ MDVCTLLEETA+YIHCL+TQVKVMKAIS QHLST
Subjt:  STTTIPRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAIS-QHLST

A0A5D3BPL2 Transcription factor IBH13.4e-4673.42Show/hide
Query:  SESGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRRRR
        S+S +TL+NSTSSR R ARTFLR FSRIKSQR       +AT   +P   +LKR+S+RIK+ AYSSMARVAGPRRAWARALLFKLQTR RHRTLMRR+RR
Subjt:  SESGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRRRR

Query:  STTTIPRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAIS-QHLST
         +T+    DDQV KLRRLLPGG+ MDVCTLLEETA+YIHCL+TQVKVMKAIS QHLST
Subjt:  STTTIPRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAIS-QHLST

A0A6J1KS83 transcription factor IBH15.7e-4671.88Show/hide
Query:  MASESGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRR
        MA ESG+T MNS+SS LRLARTFLRSFSRIKS+RP        T   S  A EL+RRSRRIK+AAYSSMARVAGP+R WARALLFKL TRARHRT M RR
Subjt:  MASESGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRR

Query:  RRSTTTIPRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAISQHLSTN
        R ST      DD V KLRRL+PGGD MDVCTLLEETA YIHCL+ QVKVM AI+ HLS N
Subjt:  RRSTTTIPRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAISQHLSTN

A0A7N2RCD6 Uncharacterized protein4.1e-2849.68Show/hide
Query:  GLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRRRRSTT
        G+TL N+ S +++ AR F+R+  +++   P+           S    E+++RS+RIK+AAYSSMA   G RRAW+RA+LFKL+ RARH  +MRRR     
Subjt:  GLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRRRRSTT

Query:  TI----PRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAISQHLS
         I    P    Q  KLR+L+PGG AMD+C+LLEETAHYI CL+TQVKVM+ I+ HLS
Subjt:  TI----PRSDDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAISQHLS

SwissProt top hitse value%identityAlignment
Q01I07 Transcription factor IBH11.7e-1035.39Show/hide
Query:  STSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRR-----RRR----
        + +++  LA  FLR+ SRI    P                  + RR+R I+ AAYSSMAR A PRRAW+RALL + + R R RTLMRR     RRR    
Subjt:  STSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRR-----RRR----

Query:  -----------------STTTIPRS----------DDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAI
                          T+   R+            + + LRRL+PGG  M+  +LLEETA Y+  L  QV++M+ +
Subjt:  -----------------STTTIPRS----------DDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAI

Q7XR02 Transcription factor IBH14.4e-1135.96Show/hide
Query:  STSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRR-----RRR----
        + +++  LA  FLR+ SRI    P                  + RR+R I+ AAYSSMAR A PRRAW+RALL +++ R R RTLMRR     RRR    
Subjt:  STSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRR-----RRR----

Query:  -----------------STTTIPRS----------DDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAI
                          T+   R+            + E LRRL+PGG  M+  +LLEETA Y+  L  QV++M+ +
Subjt:  -----------------STTTIPRS----------DDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAI

Q9SKX1 Transcription factor IBH12.1e-1339.31Show/hide
Query:  FLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVA-GPRRAWARALLFK--------LQTRARHRTLMRRRRRSTTTIPRSDDQ
        FL+S S ++ Q P  T              +   R R+IK AAY SMAR A G  R W+RALL +        ++   R   +  +RRRS    P  ++ 
Subjt:  FLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVA-GPRRAWARALLFK--------LQTRARHRTLMRRRRRSTTTIPRSDDQ

Query:  VEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAISQHLS
         E+LR L+PGG  M+   L+EETAHYI CL+ QVKVM+ +   LS
Subjt:  VEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAISQHLS

Arabidopsis top hitse value%identityAlignment
AT2G43060.1 ILI1 binding bHLH 11.5e-1439.31Show/hide
Query:  FLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVA-GPRRAWARALLFK--------LQTRARHRTLMRRRRRSTTTIPRSDDQ
        FL+S S ++ Q P  T              +   R R+IK AAY SMAR A G  R W+RALL +        ++   R   +  +RRRS    P  ++ 
Subjt:  FLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVA-GPRRAWARALLFK--------LQTRARHRTLMRRRRRSTTTIPRSDDQ

Query:  VEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAISQHLS
         E+LR L+PGG  M+   L+EETAHYI CL+ QVKVM+ +   LS
Subjt:  VEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAISQHLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGAATCGGGTCTAACCCTAATGAATTCTACCTCCTCGAGACTCCGATTAGCTCGAACCTTCCTCCGATCCTTCTCCAGGATCAAATCCCAGAGACCTACCAT
CACCACCACCACCACCGCCACCGCCGTCGTCTCCCCGTTTGCTTCGGAGCTCAAACGGAGGAGTCGACGGATAAAAGTGGCGGCCTACTCCTCCATGGCTCGCGTTGCCG
GGCCACGGCGAGCCTGGGCTAGAGCCCTCCTCTTCAAGCTCCAGACTCGAGCCAGACACAGGACCCTGATGAGACGTCGTCGTCGCTCGACGACGACGATTCCCCGCTCG
GACGATCAGGTCGAGAAGCTTCGCCGCTTGCTCCCGGGTGGCGACGCCATGGATGTGTGCACCTTGCTGGAGGAAACTGCCCATTACATCCATTGCCTCACCACACAGGT
TAAGGTCATGAAAGCCATATCTCAGCACTTGTCAACCAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCGAATCGGGTCTAACCCTAATGAATTCTACCTCCTCGAGACTCCGATTAGCTCGAACCTTCCTCCGATCCTTCTCCAGGATCAAATCCCAGAGACCTACCAT
CACCACCACCACCACCGCCACCGCCGTCGTCTCCCCGTTTGCTTCGGAGCTCAAACGGAGGAGTCGACGGATAAAAGTGGCGGCCTACTCCTCCATGGCTCGCGTTGCCG
GGCCACGGCGAGCCTGGGCTAGAGCCCTCCTCTTCAAGCTCCAGACTCGAGCCAGACACAGGACCCTGATGAGACGTCGTCGTCGCTCGACGACGACGATTCCCCGCTCG
GACGATCAGGTCGAGAAGCTTCGCCGCTTGCTCCCGGGTGGCGACGCCATGGATGTGTGCACCTTGCTGGAGGAAACTGCCCATTACATCCATTGCCTCACCACACAGGT
TAAGGTCATGAAAGCCATATCTCAGCACTTGTCAACCAATTGAAGATATATCCACAGCTGATATACACAAAAATTTCCATTAGCAGAGATCATATCCAAAGAAAGAGCAT
AAATTATACACAAGAGGAGAGAGAAATTAGAGAGAGAGAGATTTCATATGATAATATTGGTTTGATA
Protein sequenceShow/hide protein sequence
MASESGLTLMNSTSSRLRLARTFLRSFSRIKSQRPTITTTTTATAVVSPFASELKRRSRRIKVAAYSSMARVAGPRRAWARALLFKLQTRARHRTLMRRRRRSTTTIPRS
DDQVEKLRRLLPGGDAMDVCTLLEETAHYIHCLTTQVKVMKAISQHLSTN