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Lcy05g011990 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g011990
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionrRNA N-glycosidase
Genome locationChr05:13762908..13763384
RNA-Seq ExpressionLcy05g011990
SyntenyLcy05g011990
Gene Ontology termsGO:0017148 - negative regulation of translation (biological process)
GO:0030598 - rRNA N-glycosylase activity (molecular function)
InterPro domainsIPR000772 - Ricin B, lectin domain
IPR001574 - Ribosome-inactivating protein
IPR016139 - Ribosome-inactivating protein, subdomain 2
IPR035992 - Ricin B-like lectins
IPR036041 - Ribosome-inactivating protein superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5543116.1 hypothetical protein RHGRI_016012 [Rhododendron griersonianum]1.1e-2239.87Show/hide
Query:  DNTKFIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAV-GVSSGSTLPSLVNGVLQI-LGIVGYDKS
        +   F+P+P +LSLEN W +LS   Q +L    +F   + + +     ++VD +   +++ +AL +YRC   G+ S   + +L   +++I    VG D  
Subjt:  DNTKFIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAV-GVSSGSTLPSLVNGVLQI-LGIVGYDKS

Query:  CQILTNRTMHISGRDGLCVDVSDNLNKNQNPVILYPCHSGNNQKWTFQDDGTIRSWGK
        C IL   + HISGRDGLCVDV D  + + NP+ L+PC   +NQ+WTFQ DGTIRS GK
Subjt:  CQILTNRTMHISGRDGLCVDVSDNLNKNQNPVILYPCHSGNNQKWTFQDDGTIRSWGK

RXH91676.1 hypothetical protein DVH24_020699 [Malus domestica]2.1e-2342.11Show/hide
Query:  FIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKSCQILTN
        FIP+P +LSLENNW+ +S +TQ A  L G+F  SI++ +T+  + LVD V S I++ +A   Y C        T P+++   + ++     D     + N
Subjt:  FIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKSCQILTN

Query:  RTMHISGRDGLCVDVSDNLNKNQNPVILYPCHSGNNQKWTFQDDGTIRSWGK
        RT HISG +GLCVDV + L+ + N V ++PC    NQKWTFQ D TIRS  K
Subjt:  RTMHISGRDGLCVDVSDNLNKNQNPVILYPCHSGNNQKWTFQDDGTIRSWGK

TQD86967.1 hypothetical protein C1H46_027481 [Malus baccata]2.1e-2342.11Show/hide
Query:  FIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKSCQILTN
        FIP+P +LSLENNW+ +S +TQ A  L G+F  SI++ +T+  + LVD V S I++ +A   Y C        T P+++   + ++     D     + N
Subjt:  FIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKSCQILTN

Query:  RTMHISGRDGLCVDVSDNLNKNQNPVILYPCHSGNNQKWTFQDDGTIRSWGK
        RT HISG +GLCVDV + L+ + N V ++PC    NQKWTFQ D TIRS  K
Subjt:  RTMHISGRDGLCVDVSDNLNKNQNPVILYPCHSGNNQKWTFQDDGTIRSWGK

XP_008357384.2 ribosome-inactivating protein SNAIf-like [Malus domestica]2.1e-2342.11Show/hide
Query:  FIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKSCQILTN
        FIP+P +LSLENNW+ +S +TQ A  L G+F  SI++ +T+  + LVD V S I++ +A   Y C        T P+++   + ++     D     + N
Subjt:  FIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKSCQILTN

Query:  RTMHISGRDGLCVDVSDNLNKNQNPVILYPCHSGNNQKWTFQDDGTIRSWGK
        RT HISG +GLCVDV + L+ + N V ++PC    NQKWTFQ D TIRS  K
Subjt:  RTMHISGRDGLCVDVSDNLNKNQNPVILYPCHSGNNQKWTFQDDGTIRSWGK

XP_038877566.1 seed lectin-like [Benincasa hispida]1.8e-2242.48Show/hide
Query:  FIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIV-SQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKSCQILT
        F P+  I+SL++NWV LS Q Q + +L+GLF   IE+ +++ KII VD +  PI+ + IA+Q+Y C V  +              I+ +   + SC I +
Subjt:  FIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIV-SQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKSCQILT

Query:  NRTMHISGRDGLCVDVSDNLNKNQNPVILYPCHSGNNQKWTFQDDGTIRSWGK
        + T  ISGR GLC DV +  + + NP+ILYPC    NQ WTFQ DGTI+S GK
Subjt:  NRTMHISGRDGLCVDVSDNLNKNQNPVILYPCHSGNNQKWTFQDDGTIRSWGK

TrEMBL top hitse value%identityAlignment
A0A1S3C7Q1 rRNA N-glycosidase1.8e-2039.22Show/hide
Query:  FIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSP-IVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKSCQILT
        F P+   +SL++NWV LS Q Q++ +L+G+F   I++ +++ KII VD +  P I+  IA+Q++                N   +I+ +   +  C +  
Subjt:  FIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSP-IVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKSCQILT

Query:  NRTMHISGRDGLCVDVSDNLNKNQNPVILYPCHSGNNQKWTFQDDGTIRSWGK
        +RT HI GR GLCVDV + L+ + +P+ILYPC    NQ+WTFQ DGTI+S GK
Subjt:  NRTMHISGRDGLCVDVSDNLNKNQNPVILYPCHSGNNQKWTFQDDGTIRSWGK

A0A498J952 rRNA N-glycosidase1.0e-2342.11Show/hide
Query:  FIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKSCQILTN
        FIP+P +LSLENNW+ +S +TQ A  L G+F  SI++ +T+  + LVD V S I++ +A   Y C        T P+++   + ++     D     + N
Subjt:  FIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKSCQILTN

Query:  RTMHISGRDGLCVDVSDNLNKNQNPVILYPCHSGNNQKWTFQDDGTIRSWGK
        RT HISG +GLCVDV + L+ + N V ++PC    NQKWTFQ D TIRS  K
Subjt:  RTMHISGRDGLCVDVSDNLNKNQNPVILYPCHSGNNQKWTFQDDGTIRSWGK

A0A540LKG3 rRNA N-glycosidase1.0e-2342.11Show/hide
Query:  FIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKSCQILTN
        FIP+P +LSLENNW+ +S +TQ A  L G+F  SI++ +T+  + LVD V S I++ +A   Y C        T P+++   + ++     D     + N
Subjt:  FIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKSCQILTN

Query:  RTMHISGRDGLCVDVSDNLNKNQNPVILYPCHSGNNQKWTFQDDGTIRSWGK
        RT HISG +GLCVDV + L+ + N V ++PC    NQKWTFQ D TIRS  K
Subjt:  RTMHISGRDGLCVDVSDNLNKNQNPVILYPCHSGNNQKWTFQDDGTIRSWGK

A0A6A4L4D0 Uncharacterized protein (Fragment)2.6e-2242.86Show/hide
Query:  ILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKSCQILTNRTMHIS
        +LSLEN W +LS   Q   +L+G+F  S+E+ N S   ++V  +QS ++  +AL +YRC  G  S   + +L       L  VG    C IL N T H+S
Subjt:  ILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKSCQILTNRTMHIS

Query:  GRDGLCVDVSDNLNKNQNPVILYPC-HSGNNQKWTFQDDGTIRSWGK
        GRDG C+DV D  + + NP+ L+PC    +NQ+WTF+ DGTIRS GK
Subjt:  GRDGLCVDVSDNLNKNQNPVILYPC-HSGNNQKWTFQDDGTIRSWGK

B1NQB9 rRNA N-glycosidase1.2e-1937.5Show/hide
Query:  MRDNTKFIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKS
        +R  T F P+P ++SLENNW NLS   Q   +++  FP+ + + + + + ++VD +  P V+ +AL ++ C          P+     L I  +V   K 
Subjt:  MRDNTKFIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKS

Query:  CQILTNRTMHISGRDGLCVDVSDNLNKNQNPVILYPCHS--GNNQKWTFQDDGTIRSWGK
        C      T+ ISGRDG+CVDVSDN   N NP+I++ C      NQ WT + D TIRS GK
Subjt:  CQILTNRTMHISGRDGLCVDVSDNLNKNQNPVILYPCHS--GNNQKWTFQDDGTIRSWGK

SwissProt top hitse value%identityAlignment
P11140 Abrin-a3.3e-1935.62Show/hide
Query:  MRDNTKFIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKS
        ++  T F P+  ++SLENNW NLS   Q   +++  FP+ + ++N   + ++VD +  P V+ +AL ++ C          P+     L I  IV   K 
Subjt:  MRDNTKFIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKS

Query:  CQILTNRTMHISGRDGLCVDVSDNLNKNQNPVILYPCHS--GNNQKWTFQDDGTIRSWGK
        C      T+ I GRDG+CVDV DN   N N +I++ C      NQ WT + D TIRS GK
Subjt:  CQILTNRTMHISGRDGLCVDVSDNLNKNQNPVILYPCHS--GNNQKWTFQDDGTIRSWGK

P28590 Abrin-c2.0e-1936.88Show/hide
Query:  MRDNTKFIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKS
        +R  T F P+P +LSLENNW NLS   Q   +++  FP+++ +S+ + + ++VD +  P V+ +AL ++ C          P+     L I  IV   K 
Subjt:  MRDNTKFIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKS

Query:  CQILTNRTMHISGRDGLCVDVSDNLNKNQNPVILYPCHS--GNNQKWTFQDDGTIRSWGK
        C      T+ I GRDG+CVDV D+   N N +I + C      NQ WT + D TIRS GK
Subjt:  CQILTNRTMHISGRDGLCVDVSDNLNKNQNPVILYPCHS--GNNQKWTFQDDGTIRSWGK

Q06076 Abrin-d3.3e-1936.88Show/hide
Query:  MRDNTKFIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKS
        +R  T F P+P +LSLENNW NLS   Q   +++  FP+++ +S+ + + ++VD +  P V+ +AL ++ C          P+     L I  IV   K 
Subjt:  MRDNTKFIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKS

Query:  CQILTNRTMHISGRDGLCVDVSDNLNKNQNPVILYPCHS--GNNQKWTFQDDGTIRSWGK
        C      T+ I GRDG+CVDV D+   N N +I + C      NQ WT + D TIRS GK
Subjt:  CQILTNRTMHISGRDGLCVDVSDNLNKNQNPVILYPCHS--GNNQKWTFQDDGTIRSWGK

Q9M6E9 Agglutinin-15.1e-2036.88Show/hide
Query:  MRDNTKFIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKS
        + +   F P+P++LSLEN W  LS   Q   T++  FP ++ + N   + ++V  +  P VS +AL ++ C     + +  P L+  V++        K 
Subjt:  MRDNTKFIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKS

Query:  CQILTNRTMHISGRDGLCVDVSDNLNKNQNPVILYPCHS--GNNQKWTFQDDGTIRSWGK
        C      T+ I GRDGLCVDVSDN   N NP+IL+ C      NQ WT + D TIRS GK
Subjt:  CQILTNRTMHISGRDGLCVDVSDNLNKNQNPVILYPCHS--GNNQKWTFQDDGTIRSWGK

U3KRF8 Seed lectin (Fragments)2.6e-2440.51Show/hide
Query:  RDNTKFIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIV-SQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKS
        ++   F+P+  I+SLE+NW  +S Q Q + +L+GLF   +E+ N++ ++I VD +  PI+ + +ALQ+Y C   VS+G                   D  
Subjt:  RDNTKFIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIV-SQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKS

Query:  CQILTNRTMHISGRDGLCVDVSDNLNKNQNPVILYPCHSGNNQKWTFQDDGTIRSWGK
        C + T RT  ISGRD LCVDV+  L  + + +ILYPC    NQKWTF  DGT+RS GK
Subjt:  CQILTNRTMHISGRDGLCVDVSDNLNKNQNPVILYPCHSGNNQKWTFQDDGTIRSWGK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGACAACACCAAATTCATTCCAAATCCCACAATTTTAAGCTTGGAGAATAATTGGGTCAACCTTTCTGAACAAACCCAAATGGCATTGACGTTAGAGGGACTCTT
TCCACACAGCATTGAAATTTCTAACACCAGTGGAAAAATCATCTTGGTCGATGGCGTTCAATCTCCAATCGTGTCGCAAATCGCTCTACAAGTTTACCGGTGCGCCGTCG
GTGTCAGCAGCGGCAGCACTCTCCCATCACTGGTCAATGGGGTACTACAAATTTTGGGCATTGTAGGCTATGACAAATCATGTCAAATTTTGACGAATCGAACCATGCAC
ATTAGCGGCCGAGACGGGTTATGTGTGGACGTAAGTGACAACTTGAACAAAAATCAAAATCCAGTCATATTGTATCCTTGTCACTCTGGAAACAACCAGAAATGGACATT
CCAAGACGATGGGACGATTCGTTCCTGGGGTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGACAACACCAAATTCATTCCAAATCCCACAATTTTAAGCTTGGAGAATAATTGGGTCAACCTTTCTGAACAAACCCAAATGGCATTGACGTTAGAGGGACTCTT
TCCACACAGCATTGAAATTTCTAACACCAGTGGAAAAATCATCTTGGTCGATGGCGTTCAATCTCCAATCGTGTCGCAAATCGCTCTACAAGTTTACCGGTGCGCCGTCG
GTGTCAGCAGCGGCAGCACTCTCCCATCACTGGTCAATGGGGTACTACAAATTTTGGGCATTGTAGGCTATGACAAATCATGTCAAATTTTGACGAATCGAACCATGCAC
ATTAGCGGCCGAGACGGGTTATGTGTGGACGTAAGTGACAACTTGAACAAAAATCAAAATCCAGTCATATTGTATCCTTGTCACTCTGGAAACAACCAGAAATGGACATT
CCAAGACGATGGGACGATTCGTTCCTGGGGTAAATAA
Protein sequenceShow/hide protein sequence
MRDNTKFIPNPTILSLENNWVNLSEQTQMALTLEGLFPHSIEISNTSGKIILVDGVQSPIVSQIALQVYRCAVGVSSGSTLPSLVNGVLQILGIVGYDKSCQILTNRTMH
ISGRDGLCVDVSDNLNKNQNPVILYPCHSGNNQKWTFQDDGTIRSWGK