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Lcy05g012020 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g012020
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionHistone H3.2
Genome locationChr05:13786428..13791978
RNA-Seq ExpressionLcy05g012020
SyntenyLcy05g012020
Gene Ontology termsGO:0009567 - double fertilization forming a zygote and endosperm (biological process)
GO:0010597 - green leaf volatile biosynthetic process (biological process)
GO:0034508 - centromere complex assembly (biological process)
GO:0051301 - cell division (biological process)
GO:0051307 - meiotic chromosome separation (biological process)
GO:0000775 - chromosome, centromeric region (cellular component)
GO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR000164 - Histone H3/CENP-A
IPR007125 - Histone H2A/H2B/H3
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011659153.1 histone H3-like centromeric protein HTR12 isoform X2 [Cucumis sativus]9.5e-1847.83Show/hide
Query:  MARARHPAQTNSNRKSLGTGAATSSPAAPST-------------------------------------------------------VREVSYQLAPQIRR
        MARARHP +  SNR   G+GAA SSP APST                                                       V+EVS QLAPQI R
Subjt:  MARARHPAQTNSNRKSLGTGAATSSPAAPST-------------------------------------------------------VREVSYQLAPQIRR

Query:  WQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR
        WQAEAL+ALQEAAED+LVHLFEDTMLCAIHAKRVTI++
Subjt:  WQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR

XP_022156549.1 histone H3-like centromeric protein HTR12 [Momordica charantia]7.0e-2150Show/hide
Query:  MARARHPAQTNSNRKSLGTGAATSSPAAPST-------------------------------------------------------VREVSYQLAPQIRR
        MARARHPAQ N+NRK LG+G A SSPA PST                                                       V+EVSYQLAP+I R
Subjt:  MARARHPAQTNSNRKSLGTGAATSSPAAPST-------------------------------------------------------VREVSYQLAPQIRR

Query:  WQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR
        WQAEAL+ALQEAAED+LVHLFEDTMLCAIHAKRVTI++
Subjt:  WQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR

XP_022959605.1 histone H3-like centromeric protein HTR12 [Cucurbita moschata]1.9e-1847.83Show/hide
Query:  MARARHPAQTNSNRKSLGTGAATSSPAAPST-------------------------------------------------------VREVSYQLAPQIRR
        MARA+HP Q NSNRK    GA+ SS AAPST                                                       V+EVSYQLAPQ+ R
Subjt:  MARARHPAQTNSNRKSLGTGAATSSPAAPST-------------------------------------------------------VREVSYQLAPQIRR

Query:  WQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR
        WQAEAL+ALQEAAED+LVHLFEDTMLCAIHAKRVTI++
Subjt:  WQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR

XP_031744977.1 uncharacterized protein LOC101210011 isoform X3 [Cucumis sativus]3.6e-2581.48Show/hide
Query:  MARARHPAQTNSNRKSLGTGAATSSPAAPSTVREVSYQLAPQIRRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTI
        MARARHP +  SNR   G+GAA SSP APSTV+EVS QLAPQI RWQAEAL+ALQEAAED+LVHLFEDTMLCAIHAKRVTI
Subjt:  MARARHPAQTNSNRKSLGTGAATSSPAAPSTVREVSYQLAPQIRRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTI

XP_038896752.1 histone H3-like centromeric protein HTR12 [Benincasa hispida]3.5e-2050.72Show/hide
Query:  MARARHPAQTNSNRKSLGTGAATSSPAAPST-------------------------------------------------------VREVSYQLAPQIRR
        MARARHP Q  SNR   GTGAA SSPAAPST                                                       V+EVSYQLAPQI R
Subjt:  MARARHPAQTNSNRKSLGTGAATSSPAAPST-------------------------------------------------------VREVSYQLAPQIRR

Query:  WQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR
        WQAEAL+ALQEAAED+LVHLFEDTMLCAIHAKRVTI++
Subjt:  WQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR

TrEMBL top hitse value%identityAlignment
A0A0A0K4F4 Histone H3.27.8e-1848.53Show/hide
Query:  MARARHPAQTNSNRKSLGTGAATSSPAAPST-------------------------------------------------------VREVSYQLAPQIRR
        MARARHP +  SNR   G+GAA SSP APST                                                       V+EVS QLAPQI R
Subjt:  MARARHPAQTNSNRKSLGTGAATSSPAAPST-------------------------------------------------------VREVSYQLAPQIRR

Query:  WQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTI
        WQAEAL+ALQEAAED+LVHLFEDTMLCAIHAKRVTI
Subjt:  WQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTI

A0A1S3CG56 Histone H3.22.8e-1586.54Show/hide
Query:  VREVSYQLAPQIRRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR
        V+EVS QLAPQI RWQAEAL+ALQEAAED+LVHLFEDTMLCAIHAKRVTI++
Subjt:  VREVSYQLAPQIRRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR

A0A6J1DTT5 Histone H3.23.4e-2150Show/hide
Query:  MARARHPAQTNSNRKSLGTGAATSSPAAPST-------------------------------------------------------VREVSYQLAPQIRR
        MARARHPAQ N+NRK LG+G A SSPA PST                                                       V+EVSYQLAP+I R
Subjt:  MARARHPAQTNSNRKSLGTGAATSSPAAPST-------------------------------------------------------VREVSYQLAPQIRR

Query:  WQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR
        WQAEAL+ALQEAAED+LVHLFEDTMLCAIHAKRVTI++
Subjt:  WQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR

A0A6J1H6R9 Histone H3.29.2e-1947.83Show/hide
Query:  MARARHPAQTNSNRKSLGTGAATSSPAAPST-------------------------------------------------------VREVSYQLAPQIRR
        MARA+HP Q NSNRK    GA+ SS AAPST                                                       V+EVSYQLAPQ+ R
Subjt:  MARARHPAQTNSNRKSLGTGAATSSPAAPST-------------------------------------------------------VREVSYQLAPQIRR

Query:  WQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR
        WQAEAL+ALQEAAED+LVHLFEDTMLCAIHAKRVTI++
Subjt:  WQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR

A0A6J1KTZ4 Histone H3.29.2e-1947.83Show/hide
Query:  MARARHPAQTNSNRKSLGTGAATSSPAAPST-------------------------------------------------------VREVSYQLAPQIRR
        MARA+HP Q NSNRK    GA+ SS AAPST                                                       V+EVSYQLAPQ+ R
Subjt:  MARARHPAQTNSNRKSLGTGAATSSPAAPST-------------------------------------------------------VREVSYQLAPQIRR

Query:  WQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR
        WQAEAL+ALQEAAED+LVHLFEDTMLCAIHAKRVTI++
Subjt:  WQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR

SwissProt top hitse value%identityAlignment
Q59LN9 Histone H3-like centromeric protein CSE43.7e-0961.11Show/hide
Query:  VREVSYQ-LAPQI-RRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR
        VRE+S   + P    RWQ+ A+LALQEA+E +L+HL EDT LCAIHAKRVTI++
Subjt:  VREVSYQ-LAPQI-RRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR

Q6CER9 Histone H3-like centromeric protein CSE44.9e-0976.92Show/hide
Query:  RWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR
        +WQ+ ALLALQEAAE +LVHLFED  LCAIHAKRVTI++
Subjt:  RWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR

Q7RXR3 Histone H3-like centromeric protein hH3v1.1e-1166.67Show/hide
Query:  VREVSYQLAP--QIRRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR
        VRE++ Q  P  +  RWQ++A+LALQEAAE +LVHLFEDT LCAIHAKRVTI++
Subjt:  VREVSYQLAP--QIRRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR

Q8RVQ9 Histone H3-like centromeric protein HTR124.3e-1371.7Show/hide
Query:  VREVSYQLA-PQIRRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR
        VR +++ LA PQI RW AEAL+ALQEAAEDYLV LF D+MLCAIHA+RVT++R
Subjt:  VREVSYQLA-PQIRRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR

Q9Y812 Histone H3-like centromeric protein cnp12.9e-0959.65Show/hide
Query:  VREVSYQLAPQIR-----RWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR
        VRE+S +           RWQ+ AL  LQEAAE +LVHLFEDT LCAIHAKRVTI++
Subjt:  VREVSYQLAPQIR-----RWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR

Arabidopsis top hitse value%identityAlignment
AT1G01370.1 Histone superfamily protein3.0e-1471.7Show/hide
Query:  VREVSYQLA-PQIRRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR
        VR +++ LA PQI RW AEAL+ALQEAAEDYLV LF D+MLCAIHA+RVT++R
Subjt:  VREVSYQLA-PQIRRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR

AT1G01370.2 Histone superfamily protein3.0e-1471.7Show/hide
Query:  VREVSYQLA-PQIRRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR
        VR +++ LA PQI RW AEAL+ALQEAAEDYLV LF D+MLCAIHA+RVT++R
Subjt:  VREVSYQLA-PQIRRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIR

AT1G13370.1 Histone superfamily protein1.7e-0964.71Show/hide
Query:  VREVSYQLAPQIRRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTII
        VRE++      + R+Q+ A+LALQEAAE YLV LFEDT LCAIHAKRVTI+
Subjt:  VREVSYQLAPQIRRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTII

AT4G40030.1 Histone superfamily protein1.7e-0964.71Show/hide
Query:  VREVSYQLAPQIRRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTII
        VRE++      + R+Q+ A+LALQEAAE YLV LFEDT LCAIHAKRVTI+
Subjt:  VREVSYQLAPQIRRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTII

AT4G40040.1 Histone superfamily protein1.7e-0964.71Show/hide
Query:  VREVSYQLAPQIRRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTII
        VRE++      + R+Q+ A+LALQEAAE YLV LFEDT LCAIHAKRVTI+
Subjt:  VREVSYQLAPQIRRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTII


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCGAGCGAGGCATCCAGCCCAAACCAACTCCAATCGCAAGAGTTTAGGTACTGGAGCTGCGACGTCTTCCCCAGCTGCGCCGTCGACGGTAAGAGAAGTAAGCTA
CCAGTTGGCTCCACAGATTAGGCGTTGGCAAGCTGAAGCTTTACTAGCTCTTCAGGAAGCAGCAGAAGATTACTTGGTTCATCTATTTGAAGATACAATGCTATGTGCTA
TTCATGCCAAGCGTGTAACTATCATTAGACTCTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCGAGCGAGGCATCCAGCCCAAACCAACTCCAATCGCAAGAGTTTAGGTACTGGAGCTGCGACGTCTTCCCCAGCTGCGCCGTCGACGGTAAGAGAAGTAAGCTA
CCAGTTGGCTCCACAGATTAGGCGTTGGCAAGCTGAAGCTTTACTAGCTCTTCAGGAAGCAGCAGAAGATTACTTGGTTCATCTATTTGAAGATACAATGCTATGTGCTA
TTCATGCCAAGCGTGTAACTATCATTAGACTCTGTTGA
Protein sequenceShow/hide protein sequence
MARARHPAQTNSNRKSLGTGAATSSPAAPSTVREVSYQLAPQIRRWQAEALLALQEAAEDYLVHLFEDTMLCAIHAKRVTIIRLC