; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy05g012190 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy05g012190
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionCold regulated protein 27, putative isoform 2
Genome locationChr05:14021543..14025853
RNA-Seq ExpressionLcy05g012190
SyntenyLcy05g012190
Gene Ontology termsGO:0009409 - response to cold (biological process)
GO:0042752 - regulation of circadian rhythm (biological process)
InterPro domainsIPR044678 - Cold-regulated protein 27/28


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022450.1 hypothetical protein SDJN02_16181, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-9874.61Show/hide
Query:  MGDHL------PSSVSPPVADRQPPSAASASYLTRLNSESYSSSITLDGFKDLPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSK
        MGDHL      PSS+SPPV DRQPPS +SAS LT LNS+SYSSS T+D FKD P+HRCL+LDAV THWTDEKHRSYL SLEASFVQELHQYR L ALSSK
Subjt:  MGDHL------PSSVSPPVADRQPPSAASASYLTRLNSESYSSSITLDGFKDLPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSK

Query:  QKMRRKPIMHNISTSELMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPP
        QKMR +P M +IS+SELMVLQDASWQKANIG NDPLL+R ADSPAIL+DVWIN FPSAGK C  ++PDLLEE G+ SD RHLRNTK+S  SARSSQQIPP
Subjt:  QKMRRKPIMHNISTSELMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPP

Query:  CCRDSYAVITEVSDQNFVDNHSGELSDGMFIAKRLKKTTSDSLSDNQVVSYKNKRL
        CCR+SY +ITEVSDQNFVDN  GE+S GM  AKRLKK +SDS +++QVV YK   L
Subjt:  CCRDSYAVITEVSDQNFVDNHSGELSDGMFIAKRLKKTTSDSLSDNQVVSYKNKRL

XP_022952080.1 uncharacterized protein LOC111454842 isoform X1 [Cucurbita moschata]7.5e-9572.84Show/hide
Query:  HLPSSVSPPVADRQPPSAASASYLTRLNSESYSSSITLDGFKD----LPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMRR
        H PSS+SPPVADR+ P + SAS LTRLNSESYSSS T+D  +     +P+H C +LDAV THWT+EKHR +LDSLEASFVQ+LH+YRHL ALSSKQKMRR
Subjt:  HLPSSVSPPVADRQPPSAASASYLTRLNSESYSSSITLDGFKD----LPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMRR

Query:  KPIMHNISTSELMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCRDS
        KPIM NIS+SE MVLQDASWQKAN+G  DPLLD+TADSPAILEDVWINHFPSAG QC L++ D+LEECG+CSDR H+RN  +S  SARSSQQIPPCCRDS
Subjt:  KPIMHNISTSELMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCRDS

Query:  YAVITEVSDQNFVDNHSGELSDGMFIAKRLKKTTSDSLSDNQV
        + ++TEVSDQNFVD H GELSDG  I KRLKK +SDS  +N+V
Subjt:  YAVITEVSDQNFVDNHSGELSDGMFIAKRLKKTTSDSLSDNQV

XP_022952081.1 uncharacterized protein LOC111454842 isoform X2 [Cucurbita moschata]2.1e-9772.55Show/hide
Query:  HLPSSVSPPVADRQPPSAASASYLTRLNSESYSSSITLDGFKD----LPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMRR
        H PSS+SPPVADR+ P + SAS LTRLNSESYSSS T+D  +     +P+H C +LDAV THWT+EKHR +LDSLEASFVQ+LH+YRHL ALSSKQKMRR
Subjt:  HLPSSVSPPVADRQPPSAASASYLTRLNSESYSSSITLDGFKD----LPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMRR

Query:  KPIMHNISTSELMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCRDS
        KPIM NIS+SE MVLQDASWQKAN+G  DPLLD+TADSPAILEDVWINHFPSAG QC L++ D+LEECG+CSDR H+RN  +S  SARSSQQIPPCCRDS
Subjt:  KPIMHNISTSELMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCRDS

Query:  YAVITEVSDQNFVDNHSGELSDGMFIAKRLKKTTSDSLSDNQVVSYKNKRLSSER
        + ++TEVSDQNFVD H GELSDG  I KRLKK +SDS  +N+V  Y  KRLSSER
Subjt:  YAVITEVSDQNFVDNHSGELSDGMFIAKRLKKTTSDSLSDNQVVSYKNKRLSSER

XP_023529516.1 uncharacterized protein LOC111792349 isoform X1 [Cucurbita pepo subsp. pepo]3.5e-10075Show/hide
Query:  MGDHL------PSSVSPPVADRQPPSAASASYLTRLNSESYSSSITLDGFKDLPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSK
        MGDHL      PSS+SPPV DRQPPS +SAS LT LNS+SYSSS+T+D FKD P+HRCL+LDAV THWTDEKHRSYL SLEASFVQELHQYR L ALSSK
Subjt:  MGDHL------PSSVSPPVADRQPPSAASASYLTRLNSESYSSSITLDGFKDLPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSK

Query:  QKMRRKPIMHNISTSELMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPP
        QKMR +P M +IS+SELMVLQDASWQKANIG NDPLL+R AD PAIL+DVWIN FPSAGKQC  ++PDLLEE G+ SDRRHLRNTK+S  SARSSQQ+PP
Subjt:  QKMRRKPIMHNISTSELMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPP

Query:  CCRDSYAVITEVSDQNFVDNHSGELSDGMFIAKRLKKTTSDSLSDNQVVSYKNKRL
        CCR+SY +ITEVSDQNFVDNH GE+S GM  AKRLKK +SDS +++QVV YK   L
Subjt:  CCRDSYAVITEVSDQNFVDNHSGELSDGMFIAKRLKKTTSDSLSDNQVVSYKNKRL

XP_023553839.1 uncharacterized protein LOC111811294 isoform X2 [Cucurbita pepo subsp. pepo]7.5e-9571.37Show/hide
Query:  HLPSSVSPPVADRQPPSAASASYLTRLNSESYSSSITLDGFKD----LPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMRR
        H PSS+SPPVADR+ P + SAS LTRLNSESYSSS T+D  +     +P+H C +LDAV THWTDEKHR +LDSLEASFVQ+LH+YRHL A SSKQK+RR
Subjt:  HLPSSVSPPVADRQPPSAASASYLTRLNSESYSSSITLDGFKD----LPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMRR

Query:  KPIMHNISTSELMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCRDS
        K IM NIS+SE +VLQDASWQKANIG  DPLL +TADSPAILEDVWINHFPSAGK C L++ D+LEECG+CSDRRH+RN  +SC SARSSQQIP CCRDS
Subjt:  KPIMHNISTSELMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCRDS

Query:  YAVITEVSDQNFVDNHSGELSDGMFIAKRLKKTTSDSLSDNQVVSYKNKRLSSER
        + + TEVSDQNFVD H GELSDG  I KRLKK +SDS  +++V  Y  KRLSSER
Subjt:  YAVITEVSDQNFVDNHSGELSDGMFIAKRLKKTTSDSLSDNQVVSYKNKRLSSER

TrEMBL top hitse value%identityAlignment
A0A1S3BZU8 uncharacterized protein LOC103495241 isoform X13.4e-9372.8Show/hide
Query:  MGD-HLPSSVSPPVADRQP--PSAASASYLTRLNSESYSSSITLDGFKD-LPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQK
        MGD H PS VS P+ADRQ   P A+S +  T  NSES+SSSIT+DG K  L +H CL+LDA  THWTDEKHRSYLDSLEASFVQ LHQ+R +HALSSKQK
Subjt:  MGD-HLPSSVSPPVADRQP--PSAASASYLTRLNSESYSSSITLDGFKD-LPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQK

Query:  MRRKPIMHNISTSELMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCC
        MRRKPIM + S+SELMVLQDASWQKANIG NDPLLD+TADSPAILED+WINHFPSAGKQC+L++PDLLEECG+CSDRRH+R+  +SCGSAR+SQQ  PCC
Subjt:  MRRKPIMHNISTSELMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCC

Query:  RDSYAVITEVSDQNFVDNHSGELSDGMFIAKRLKKTTSDSLSDNQVVSYK
         +SY +ITEVSDQNFVDN  GELS GM  AKRLKK +S  L + QVV +K
Subjt:  RDSYAVITEVSDQNFVDNHSGELSDGMFIAKRLKKTTSDSLSDNQVVSYK

A0A5D3C4A3 Cold regulated protein 27, putative isoform 21.9e-9173.06Show/hide
Query:  MGD-HLPSSVSPPVADRQP--PSAASASYLTRLNSESYSSSITLDGFKD-LPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQK
        MGD H PS VS P+ADRQ   P A+S +  T  NSES+SSSIT+DG K  L +H CL+LDA  THWTDEKHRSYLDSLEASFVQ LHQ+R +HALSSKQK
Subjt:  MGD-HLPSSVSPPVADRQP--PSAASASYLTRLNSESYSSSITLDGFKD-LPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQK

Query:  MRRKPIMHNISTSELMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCC
        MRRKPIM + S+SELMVLQDASWQKANIG NDPLLD+TADSPAILED+WINHFPSAGKQC+L++PDLLEECG+CSDRRH+R+  +SCGSAR+SQQ  PCC
Subjt:  MRRKPIMHNISTSELMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCC

Query:  RDSYAVITEVSDQNFVDNHSGELSDGMFIAKRLKKTTSDSLSDNQ
         +SY +ITEVSDQNFVDN  GELS GM  AKRLKK +S  L + Q
Subjt:  RDSYAVITEVSDQNFVDNHSGELSDGMFIAKRLKKTTSDSLSDNQ

A0A6J1GJA3 uncharacterized protein LOC111454842 isoform X21.0e-9772.55Show/hide
Query:  HLPSSVSPPVADRQPPSAASASYLTRLNSESYSSSITLDGFKD----LPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMRR
        H PSS+SPPVADR+ P + SAS LTRLNSESYSSS T+D  +     +P+H C +LDAV THWT+EKHR +LDSLEASFVQ+LH+YRHL ALSSKQKMRR
Subjt:  HLPSSVSPPVADRQPPSAASASYLTRLNSESYSSSITLDGFKD----LPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMRR

Query:  KPIMHNISTSELMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCRDS
        KPIM NIS+SE MVLQDASWQKAN+G  DPLLD+TADSPAILEDVWINHFPSAG QC L++ D+LEECG+CSDR H+RN  +S  SARSSQQIPPCCRDS
Subjt:  KPIMHNISTSELMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCRDS

Query:  YAVITEVSDQNFVDNHSGELSDGMFIAKRLKKTTSDSLSDNQVVSYKNKRLSSER
        + ++TEVSDQNFVD H GELSDG  I KRLKK +SDS  +N+V  Y  KRLSSER
Subjt:  YAVITEVSDQNFVDNHSGELSDGMFIAKRLKKTTSDSLSDNQVVSYKNKRLSSER

A0A6J1GKR5 uncharacterized protein LOC111454842 isoform X13.6e-9572.84Show/hide
Query:  HLPSSVSPPVADRQPPSAASASYLTRLNSESYSSSITLDGFKD----LPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMRR
        H PSS+SPPVADR+ P + SAS LTRLNSESYSSS T+D  +     +P+H C +LDAV THWT+EKHR +LDSLEASFVQ+LH+YRHL ALSSKQKMRR
Subjt:  HLPSSVSPPVADRQPPSAASASYLTRLNSESYSSSITLDGFKD----LPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMRR

Query:  KPIMHNISTSELMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCRDS
        KPIM NIS+SE MVLQDASWQKAN+G  DPLLD+TADSPAILEDVWINHFPSAG QC L++ D+LEECG+CSDR H+RN  +S  SARSSQQIPPCCRDS
Subjt:  KPIMHNISTSELMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCRDS

Query:  YAVITEVSDQNFVDNHSGELSDGMFIAKRLKKTTSDSLSDNQV
        + ++TEVSDQNFVD H GELSDG  I KRLKK +SDS  +N+V
Subjt:  YAVITEVSDQNFVDNHSGELSDGMFIAKRLKKTTSDSLSDNQV

A0A6J1I9R8 uncharacterized protein LOC111470946 isoform X21.2e-9370.59Show/hide
Query:  HLPSSVSPPVADRQPPSAASASYLTRLNSESYSSSITLDGFKD----LPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMRR
        H PSS+SPPVADR+   + SAS LTRLNSESYSSS T+D  +     +P+H C +LDAV THWTDEKHR +LD+LEASFVQ+LH+YRHL A SSKQKMRR
Subjt:  HLPSSVSPPVADRQPPSAASASYLTRLNSESYSSSITLDGFKD----LPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMRR

Query:  KPIMHNISTSELMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCRDS
        KPIM NIS+SE MVLQDASWQKANIG  DPLL +TADSPAILEDVWINHFPSAG Q   ++ D+LEECG+CSDR H+RN  +SC SARSSQQIPPCCRDS
Subjt:  KPIMHNISTSELMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCRDS

Query:  YAVITEVSDQNFVDNHSGELSDGMFIAKRLKKTTSDSLSDNQVVSYKNKRLSSER
        + ++ EVSDQNFVD H GELS G  I KRLKK +SDSL +++V  Y  KRLSSER
Subjt:  YAVITEVSDQNFVDNHSGELSDGMFIAKRLKKTTSDSLSDNQVVSYKNKRLSSER

SwissProt top hitse value%identityAlignment
Q8L8T7 Cold-regulated protein 278.6e-0931.34Show/hide
Query:  VHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMR--------RKPIMHNISTSELMVLQDASWQKANIGMNDPLLD--RTADSPAILEDVWIN
        + T WT+EKH  YL S+EASFV +L  Y  L AL   + +         RKP     S  +  VL D  WQK N+   +  ++     +S   L   WI 
Subjt:  VHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMR--------RKPIMHNISTSELMVLQDASWQKANIGMNDPLLD--RTADSPAILEDVWIN

Query:  HF-PSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCRDSYAVI---TEVSDQNFVDNHSGELSDGMFIAKRLKKT-TSDSLSDNQV
        H+ P    Q  +      +   + + ++ +     S GSA S +Q+    RD   +     EVSDQNFV N   +  +G   +K++K    S+S S +QV
Subjt:  HF-PSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCRDSYAVI---TEVSDQNFVDNHSGELSDGMFIAKRLKKT-TSDSLSDNQV

Query:  V
        V
Subjt:  V

Q8L983 Cold-regulated protein 281.2e-0530.65Show/hide
Query:  DRQPPSAASASYLTRLNSESYSSSITLDGFKDLPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMRRKPIMHNI--STSELM
        DR    A++ S      S S  S +T +  +     +  E     T WT+EKH SYLD LE+SFV++L+    L    +++  R + +  N   S  +  
Subjt:  DRQPPSAASASYLTRLNSESYSSSITLDGFKDLPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMRRKPIMHNI--STSELM

Query:  VLQDASWQKANIGMNDPLLDRTAD
        VLQ+  WQK N G     L+ +++
Subjt:  VLQDASWQKANIGMNDPLLDRTAD

Arabidopsis top hitse value%identityAlignment
AT4G33980.1 BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.2)8.2e-0730.65Show/hide
Query:  DRQPPSAASASYLTRLNSESYSSSITLDGFKDLPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMRRKPIMHNI--STSELM
        DR    A++ S      S S  S +T +  +     +  E     T WT+EKH SYLD LE+SFV++L+    L    +++  R + +  N   S  +  
Subjt:  DRQPPSAASASYLTRLNSESYSSSITLDGFKDLPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMRRKPIMHNI--STSELM

Query:  VLQDASWQKANIGMNDPLLDRTAD
        VLQ+  WQK N G     L+ +++
Subjt:  VLQDASWQKANIGMNDPLLDRTAD

AT4G33980.2 FUNCTIONS IN: molecular_function unknown8.2e-0730.65Show/hide
Query:  DRQPPSAASASYLTRLNSESYSSSITLDGFKDLPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMRRKPIMHNI--STSELM
        DR    A++ S      S S  S +T +  +     +  E     T WT+EKH SYLD LE+SFV++L+    L    +++  R + +  N   S  +  
Subjt:  DRQPPSAASASYLTRLNSESYSSSITLDGFKDLPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMRRKPIMHNI--STSELM

Query:  VLQDASWQKANIGMNDPLLDRTAD
        VLQ+  WQK N G     L+ +++
Subjt:  VLQDASWQKANIGMNDPLLDRTAD

AT5G42900.1 cold regulated gene 276.1e-1031.34Show/hide
Query:  VHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMR--------RKPIMHNISTSELMVLQDASWQKANIGMNDPLLD--RTADSPAILEDVWIN
        + T WT+EKH  YL S+EASFV +L  Y  L AL   + +         RKP     S  +  VL D  WQK N+   +  ++     +S   L   WI 
Subjt:  VHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMR--------RKPIMHNISTSELMVLQDASWQKANIGMNDPLLD--RTADSPAILEDVWIN

Query:  HF-PSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCRDSYAVI---TEVSDQNFVDNHSGELSDGMFIAKRLKKT-TSDSLSDNQV
        H+ P    Q  +      +   + + ++ +     S GSA S +Q+    RD   +     EVSDQNFV N   +  +G   +K++K    S+S S +QV
Subjt:  HF-PSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCRDSYAVI---TEVSDQNFVDNHSGELSDGMFIAKRLKKT-TSDSLSDNQV

Query:  V
        V
Subjt:  V

AT5G42900.2 cold regulated gene 276.1e-1031.34Show/hide
Query:  VHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMR--------RKPIMHNISTSELMVLQDASWQKANIGMNDPLLD--RTADSPAILEDVWIN
        + T WT+EKH  YL S+EASFV +L  Y  L AL   + +         RKP     S  +  VL D  WQK N+   +  ++     +S   L   WI 
Subjt:  VHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMR--------RKPIMHNISTSELMVLQDASWQKANIGMNDPLLD--RTADSPAILEDVWIN

Query:  HF-PSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCRDSYAVI---TEVSDQNFVDNHSGELSDGMFIAKRLKKT-TSDSLSDNQV
        H+ P    Q  +      +   + + ++ +     S GSA S +Q+    RD   +     EVSDQNFV N   +  +G   +K++K    S+S S +QV
Subjt:  HF-PSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCRDSYAVI---TEVSDQNFVDNHSGELSDGMFIAKRLKKT-TSDSLSDNQV

Query:  V
        V
Subjt:  V

AT5G42900.3 cold regulated gene 272.1e-1032Show/hide
Query:  VHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMR--------RKPIMHNISTSELMVLQDASWQKANIGMNDPLLD--RTADSPAILEDVWIN
        + T WT+EKH  YL S+EASFV +L  Y  L AL   + +         RKP     S  +  VL D  WQK N+   +  ++     +S   L   WI 
Subjt:  VHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMR--------RKPIMHNISTSELMVLQDASWQKANIGMNDPLLD--RTADSPAILEDVWIN

Query:  HF-PSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCR--DSYAVITEVSDQNFVDNHSGELSDGMFIAKRLKKT-TSDSLSDNQVV
        H+ P    Q  +      +   + + ++ +     S GSA S +Q+    R  D  +V  EVSDQNFV N   +  +G   +K++K    S+S S +QVV
Subjt:  HF-PSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCR--DSYAVITEVSDQNFVDNHSGELSDGMFIAKRLKKT-TSDSLSDNQVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGACCATCTGCCGTCGTCCGTATCGCCGCCGGTTGCTGATCGACAACCACCCTCGGCGGCCTCTGCTAGCTACTTGACTCGCTTGAACTCCGAATCCTACTCTTC
TTCCATTACTCTTGACGGCTTCAAGGATTTGCCTGCTCATCGTTGTCTGGAACTGGATGCGGTGCATACACATTGGACAGATGAGAAACACAGATCATATCTTGATTCTT
TAGAGGCATCTTTTGTCCAAGAGTTACATCAATATAGACACTTGCATGCTTTGTCCTCGAAACAGAAAATGCGTCGGAAGCCGATCATGCATAATATATCTACTTCAGAG
TTGATGGTCCTTCAAGATGCCTCCTGGCAGAAGGCTAACATTGGGATGAATGATCCTTTATTGGATAGGACTGCCGATTCTCCTGCTATTTTAGAGGATGTATGGATAAA
TCATTTTCCTTCTGCAGGAAAACAGTGTGCTCTGGATTCTCCTGATCTCCTTGAAGAATGTGGAACTTGTAGTGATAGGAGACACTTAAGAAACACGAAAAGCTCCTGTG
GATCTGCCAGAAGTTCACAGCAGATCCCTCCATGCTGTCGTGATTCTTATGCAGTCATTACAGAAGTTTCAGATCAAAACTTTGTGGATAATCATTCAGGAGAGTTGTCT
GATGGCATGTTTATTGCAAAAAGACTAAAGAAAACTACTTCTGATTCTTTGAGCGACAACCAGGTTGTATCATATAAGAATAAGAGATTATCATCAGAAAGATAA
mRNA sequenceShow/hide mRNA sequence
ACCACCACCATTCACCGCTTCTCTCTCCTCTTCTTCTTCCTCCTCTCTCTCTCTCTTCATTTCATTTCTGCACGAGCCTGAATCCCGAGAGGGTTTCGGACCTAAATTTT
CGCCCACGATTCCTTTTTCTTCTCTCTTTTTCCTTCATTTCATCTTCTATATTTGCTTTCTCCCAGCGATTTCCCCTTGTTTTTGATCCATCAATAATGGGAGACCATCT
GCCGTCGTCCGTATCGCCGCCGGTTGCTGATCGACAACCACCCTCGGCGGCCTCTGCTAGCTACTTGACTCGCTTGAACTCCGAATCCTACTCTTCTTCCATTACTCTTG
ACGGCTTCAAGGATTTGCCTGCTCATCGTTGTCTGGAACTGGATGCGGTGCATACACATTGGACAGATGAGAAACACAGATCATATCTTGATTCTTTAGAGGCATCTTTT
GTCCAAGAGTTACATCAATATAGACACTTGCATGCTTTGTCCTCGAAACAGAAAATGCGTCGGAAGCCGATCATGCATAATATATCTACTTCAGAGTTGATGGTCCTTCA
AGATGCCTCCTGGCAGAAGGCTAACATTGGGATGAATGATCCTTTATTGGATAGGACTGCCGATTCTCCTGCTATTTTAGAGGATGTATGGATAAATCATTTTCCTTCTG
CAGGAAAACAGTGTGCTCTGGATTCTCCTGATCTCCTTGAAGAATGTGGAACTTGTAGTGATAGGAGACACTTAAGAAACACGAAAAGCTCCTGTGGATCTGCCAGAAGT
TCACAGCAGATCCCTCCATGCTGTCGTGATTCTTATGCAGTCATTACAGAAGTTTCAGATCAAAACTTTGTGGATAATCATTCAGGAGAGTTGTCTGATGGCATGTTTAT
TGCAAAAAGACTAAAGAAAACTACTTCTGATTCTTTGAGCGACAACCAGGTTGTATCATATAAGAATAAGAGATTATCATCAGAAAGATAAAAGCCAGACGCCAAATTGT
CTTCAGAACATCCTCAAAACTTTGTGCCTCGAAATTCAGATTTGTGTTACTTTGTAAAAGGGAGCTGACAACAATTCGTTCCAACATGTGAAAACATTAGCTTTCCAAGC
TCATTAACCAAATGCCACACGGTTTTGTTTTCCATTCGAGAGAGCATTGTAAAGAAACTCAATAAGGGAAGTGGCAGCAATAATTCTTGACCAGAAGATCTGCGGCAGGA
AGGAGAAAATATGTTTGTATATGGTACAAACTAAACTTTTTCCTAGTTCAAATATTGAGTGAAATATACGTTAACCTTTTCTTTTCTCCAGTTTCCTTTTCCTTAGAGGT
TGAAAAAAATGGAAATTCTAATAGCTCAATATACATGTTATAGAGAAGCTAGACACCCTGATAGTGAGATAGAATACATACCTTTTCTGATTTGTTTTAAATAGTGTCAT
TTTGAAGTTCTGTTAGAAATCTCAAGTGTAAATTATTACATAAAACAAAGTGCCATTCTTTTGTGACACTGAGAAAGAATTGAACGAGCTTGTTGATTTTCTTTAGGGGG
TAAAGTTTCATTATATTGTATCCTGAGATTGATTAATTTTCTTTAGGGGGTGAAGAT
Protein sequenceShow/hide protein sequence
MGDHLPSSVSPPVADRQPPSAASASYLTRLNSESYSSSITLDGFKDLPAHRCLELDAVHTHWTDEKHRSYLDSLEASFVQELHQYRHLHALSSKQKMRRKPIMHNISTSE
LMVLQDASWQKANIGMNDPLLDRTADSPAILEDVWINHFPSAGKQCALDSPDLLEECGTCSDRRHLRNTKSSCGSARSSQQIPPCCRDSYAVITEVSDQNFVDNHSGELS
DGMFIAKRLKKTTSDSLSDNQVVSYKNKRLSSER